Literature DB >> 24513612

Admixture facilitates genetic adaptations to high altitude in Tibet.

Choongwon Jeong1, Gorka Alkorta-Aranburu1, Buddha Basnyat2, Maniraj Neupane3, David B Witonsky1, Jonathan K Pritchard4, Cynthia M Beall5, Anna Di Rienzo1.   

Abstract

Admixture is recognized as a widespread feature of human populations, renewing interest in the possibility that genetic exchange can facilitate adaptations to new environments. Studies of Tibetans revealed candidates for high-altitude adaptations in the EGLN1 and EPAS1 genes, associated with lower haemoglobin concentration. However, the history of these variants or that of Tibetans remains poorly understood. Here we analyse genotype data for the Nepalese Sherpa, and find that Tibetans are a mixture of ancestral populations related to the Sherpa and Han Chinese. EGLN1 and EPAS1 genes show a striking enrichment of high-altitude ancestry in the Tibetan genome, indicating that migrants from low altitude acquired adaptive alleles from the highlanders. Accordingly, the Sherpa and Tibetans share adaptive haemoglobin traits. This admixture-mediated adaptation shares important features with adaptive introgression. Therefore, we identify a novel mechanism, beyond selection on new mutations or on standing variation, through which populations can adapt to local environments.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24513612      PMCID: PMC4643256          DOI: 10.1038/ncomms4281

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  49 in total

1.  Natural selection on EPAS1 (HIF2alpha) associated with low hemoglobin concentration in Tibetan highlanders.

Authors:  Cynthia M Beall; Gianpiero L Cavalleri; Libin Deng; Robert C Elston; Yang Gao; Jo Knight; Chaohua Li; Jiang Chuan Li; Yu Liang; Mark McCormack; Hugh E Montgomery; Hao Pan; Peter A Robbins; Kevin V Shianna; Siu Cheung Tam; Ngodrop Tsering; Krishna R Veeramah; Wei Wang; Puchung Wangdui; Michael E Weale; Yaomin Xu; Zhe Xu; Ling Yang; M Justin Zaman; Changqing Zeng; Li Zhang; Xianglong Zhang; Pingcuo Zhaxi; Yong Tang Zheng
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

2.  Sequencing of 50 human exomes reveals adaptation to high altitude.

Authors:  Xin Yi; Yu Liang; Emilia Huerta-Sanchez; Xin Jin; Zha Xi Ping Cuo; John E Pool; Xun Xu; Hui Jiang; Nicolas Vinckenbosch; Thorfinn Sand Korneliussen; Hancheng Zheng; Tao Liu; Weiming He; Kui Li; Ruibang Luo; Xifang Nie; Honglong Wu; Meiru Zhao; Hongzhi Cao; Jing Zou; Ying Shan; Shuzheng Li; Qi Yang; Peixiang Ni; Geng Tian; Junming Xu; Xiao Liu; Tao Jiang; Renhua Wu; Guangyu Zhou; Meifang Tang; Junjie Qin; Tong Wang; Shuijian Feng; Guohong Li; Jiangbai Luosang; Wei Wang; Fang Chen; Yading Wang; Xiaoguang Zheng; Zhuo Li; Zhuoma Bianba; Ge Yang; Xinping Wang; Shuhui Tang; Guoyi Gao; Yong Chen; Zhen Luo; Lamu Gusang; Zheng Cao; Qinghui Zhang; Weihan Ouyang; Xiaoli Ren; Huiqing Liang; Huisong Zheng; Yebo Huang; Jingxiang Li; Lars Bolund; Karsten Kristiansen; Yingrui Li; Yong Zhang; Xiuqing Zhang; Ruiqiang Li; Songgang Li; Huanming Yang; Rasmus Nielsen; Jun Wang; Jian Wang
Journal:  Science       Date:  2010-07-02       Impact factor: 47.728

Review 3.  Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation.

Authors:  Philip W Hedrick
Journal:  Mol Ecol       Date:  2013-08-01       Impact factor: 6.185

4.  Genetics and beyond--the transcriptome of human monocytes and disease susceptibility.

Authors:  Tanja Zeller; Philipp Wild; Silke Szymczak; Maxime Rotival; Arne Schillert; Raphaele Castagne; Seraya Maouche; Marine Germain; Karl Lackner; Heidi Rossmann; Medea Eleftheriadis; Christoph R Sinning; Renate B Schnabel; Edith Lubos; Detlev Mennerich; Werner Rust; Claire Perret; Carole Proust; Viviane Nicaud; Joseph Loscalzo; Norbert Hübner; David Tregouet; Thomas Münzel; Andreas Ziegler; Laurence Tiret; Stefan Blankenberg; François Cambien
Journal:  PLoS One       Date:  2010-05-18       Impact factor: 3.240

5.  The effect of hypoxia on the expression of 150 kDa oxygen-regulated protein (ORP 150) in HeLa cells.

Authors:  Marzanna Cechowska-Pasko; Edward Bankowski; Patrick Chene
Journal:  Cell Physiol Biochem       Date:  2006-02-07

6.  Oxygen-regulated protein-150 prevents calcium homeostasis deregulation and apoptosis induced by oxidized LDL in vascular cells.

Authors:  M Sanson; C Ingueneau; C Vindis; J-C Thiers; Y Glock; H Rousseau; Y Sawa; Y Bando; Z Mallat; R Salvayre; A Nègre-Salvayre
Journal:  Cell Death Differ       Date:  2008-04-11       Impact factor: 15.828

7.  Adaptations to climate-mediated selective pressures in humans.

Authors:  Angela M Hancock; David B Witonsky; Gorka Alkorta-Aranburu; Cynthia M Beall; Amha Gebremedhin; Rem Sukernik; Gerd Utermann; Jonathan K Pritchard; Graham Coop; Anna Di Rienzo
Journal:  PLoS Genet       Date:  2011-04-21       Impact factor: 5.917

8.  Population structure and eigenanalysis.

Authors:  Nick Patterson; Alkes L Price; David Reich
Journal:  PLoS Genet       Date:  2006-12       Impact factor: 5.917

9.  Reactome knowledgebase of human biological pathways and processes.

Authors:  Lisa Matthews; Gopal Gopinath; Marc Gillespie; Michael Caudy; David Croft; Bernard de Bono; Phani Garapati; Jill Hemish; Henning Hermjakob; Bijay Jassal; Alex Kanapin; Suzanna Lewis; Shahana Mahajan; Bruce May; Esther Schmidt; Imre Vastrik; Guanming Wu; Ewan Birney; Lincoln Stein; Peter D'Eustachio
Journal:  Nucleic Acids Res       Date:  2008-11-03       Impact factor: 16.971

10.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

View more
  81 in total

1.  Deep History of East Asian Populations Revealed Through Genetic Analysis of the Ainu.

Authors:  Choongwon Jeong; Shigeki Nakagome; Anna Di Rienzo
Journal:  Genetics       Date:  2015-10-23       Impact factor: 4.562

2.  Widespread signals of convergent adaptation to high altitude in Asia and america.

Authors:  Matthieu Foll; Oscar E Gaggiotti; Josephine T Daub; Alexandra Vatsiou; Laurent Excoffier
Journal:  Am J Hum Genet       Date:  2014-09-25       Impact factor: 11.025

Review 3.  Altitude Adaptation: A Glimpse Through Various Lenses.

Authors:  Tatum S Simonson
Journal:  High Alt Med Biol       Date:  2015-06       Impact factor: 1.981

Review 4.  Adaptations to local environments in modern human populations.

Authors:  Choongwon Jeong; Anna Di Rienzo
Journal:  Curr Opin Genet Dev       Date:  2014-08-15       Impact factor: 5.578

5.  Genome-wide scan of 29,141 African Americans finds no evidence of directional selection since admixture.

Authors:  Gaurav Bhatia; Arti Tandon; Nick Patterson; Melinda C Aldrich; Christine B Ambrosone; Christopher Amos; Elisa V Bandera; Sonja I Berndt; Leslie Bernstein; William J Blot; Cathryn H Bock; Neil Caporaso; Graham Casey; Sandra L Deming; W Ryan Diver; Susan M Gapstur; Elizabeth M Gillanders; Curtis C Harris; Brian E Henderson; Sue A Ingles; William Isaacs; Phillip L De Jager; Esther M John; Rick A Kittles; Emma Larkin; Lorna H McNeill; Robert C Millikan; Adam Murphy; Christine Neslund-Dudas; Sarah Nyante; Michael F Press; Jorge L Rodriguez-Gil; Benjamin A Rybicki; Ann G Schwartz; Lisa B Signorello; Margaret Spitz; Sara S Strom; Margaret A Tucker; John K Wiencke; John S Witte; Xifeng Wu; Yuko Yamamura; Krista A Zanetti; Wei Zheng; Regina G Ziegler; Stephen J Chanock; Christopher A Haiman; David Reich; Alkes L Price
Journal:  Am J Hum Genet       Date:  2014-09-18       Impact factor: 11.025

6.  Antioxidant defense and oxidative damage vary widely among high-altitude residents.

Authors:  Allison J Janocha; Suzy A A Comhair; Buddha Basnyat; Maniraj Neupane; Amha Gebremedhin; Anam Khan; Kristin S Ricci; Renliang Zhang; Serpil C Erzurum; Cynthia M Beall
Journal:  Am J Hum Biol       Date:  2017-07-20       Impact factor: 1.937

Review 7.  Measuring high-altitude adaptation.

Authors:  Lorna G Moore
Journal:  J Appl Physiol (1985)       Date:  2017-08-31

8.  Ancestral Origins and Genetic History of Tibetan Highlanders.

Authors:  Dongsheng Lu; Haiyi Lou; Kai Yuan; Xiaoji Wang; Yuchen Wang; Chao Zhang; Yan Lu; Xiong Yang; Lian Deng; Ying Zhou; Qidi Feng; Ya Hu; Qiliang Ding; Yajun Yang; Shilin Li; Li Jin; Yaqun Guan; Bing Su; Longli Kang; Shuhua Xu
Journal:  Am J Hum Genet       Date:  2016-08-25       Impact factor: 11.025

9.  Natural selection for the Duffy-null allele in the recently admixed people of Madagascar.

Authors:  Jason A Hodgson; Joseph K Pickrell; Laurel N Pearson; Ellen E Quillen; António Prista; Jorge Rocha; Himla Soodyall; Mark D Shriver; George H Perry
Journal:  Proc Biol Sci       Date:  2014-08-22       Impact factor: 5.349

10.  Human Genetic Adaptation to High Altitudes: Current Status and Future Prospects.

Authors:  Lorna G Moore
Journal:  Quat Int       Date:  2016-10-06       Impact factor: 2.130

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.