Literature DB >> 25129844

Adaptations to local environments in modern human populations.

Choongwon Jeong1, Anna Di Rienzo2.   

Abstract

After leaving sub-Saharan Africa around 50000-100000 years ago, anatomically modern humans have quickly occupied extremely diverse environments. Human populations were exposed to further environmental changes resulting from cultural innovations, such as the spread of farming, which gave rise to new selective pressures related to pathogen exposures and dietary shifts. In addition to changing the frequency of individual adaptive alleles, natural selection may also shape the overall genetic architecture of adaptive traits. Here, we review recent advances in understanding the genetic architecture of adaptive human phenotypes based on insights from the studies of lactase persistence, skin pigmentation and high-altitude adaptation. These adaptations evolved in parallel in multiple human populations, providing a chance to investigate independent realizations of the evolutionary process. We suggest that the outcome of adaptive evolution is often highly variable even under similar selective pressures. Finally, we highlight a growing need for detecting adaptations that did not follow the classical sweep model and for incorporating new sources of genetic evidence such as information from ancient DNA.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25129844      PMCID: PMC4258478          DOI: 10.1016/j.gde.2014.06.011

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  98 in total

1.  Genetic signatures of strong recent positive selection at the lactase gene.

Authors:  Todd Bersaglieri; Pardis C Sabeti; Nick Patterson; Trisha Vanderploeg; Steve F Schaffner; Jared A Drake; Matthew Rhodes; David E Reich; Joel N Hirschhorn
Journal:  Am J Hum Genet       Date:  2004-04-26       Impact factor: 11.025

2.  An Ethiopian pattern of human adaptation to high-altitude hypoxia.

Authors:  Cynthia M Beall; Michael J Decker; Gary M Brittenham; Irving Kushner; Amha Gebremedhin; Kingman P Strohl
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-05       Impact factor: 11.205

3.  Evidence for variable selective pressures at MC1R.

Authors:  R M Harding; E Healy; A J Ray; N S Ellis; N Flanagan; C Todd; C Dixon; A Sajantila; I J Jackson; M A Birch-Machin; J L Rees
Journal:  Am J Hum Genet       Date:  2000-03-24       Impact factor: 11.025

4.  Identification of a variant associated with adult-type hypolactasia.

Authors:  Nabil Sabri Enattah; Timo Sahi; Erkki Savilahti; Joseph D Terwilliger; Leena Peltonen; Irma Järvelä
Journal:  Nat Genet       Date:  2002-01-14       Impact factor: 38.330

5.  The evolution of human skin coloration.

Authors:  N G Jablonski; G Chaplin
Journal:  J Hum Evol       Date:  2000-07       Impact factor: 3.895

6.  High polymorphism at the human melanocortin 1 receptor locus.

Authors:  B K Rana; D Hewett-Emmett; L Jin; B H Chang; N Sambuughin; M Lin; S Watkins; M Bamshad; L B Jorde; M Ramsay; T Jenkins; W H Li
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

Review 7.  Fetal growth restriction and maternal oxygen transport during high altitude pregnancy.

Authors:  Lorna G Moore
Journal:  High Alt Med Biol       Date:  2003       Impact factor: 1.981

8.  The Yana RHS site: humans in the Arctic before the last glacial maximum.

Authors:  V V Pitulko; P A Nikolsky; E Yu Girya; A E Basilyan; V E Tumskoy; S A Koulakov; S N Astakhov; E Yu Pavlova; M A Anisimov
Journal:  Science       Date:  2004-01-02       Impact factor: 47.728

9.  Tyrosinase processing and intracellular trafficking is disrupted in mouse primary melanocytes carrying the underwhite (uw) mutation. A model for oculocutaneous albinism (OCA) type 4.

Authors:  Gertrude-E Costin; Julio C Valencia; Wilfred D Vieira; M Lynn Lamoreux; Vincent J Hearing
Journal:  J Cell Sci       Date:  2003-08-01       Impact factor: 5.285

Review 10.  Genetics of lactase persistence and lactose intolerance.

Authors:  Dallas M Swallow
Journal:  Annu Rev Genet       Date:  2003       Impact factor: 16.830

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  31 in total

1.  Human-specific derived alleles of CD33 and other genes protect against postreproductive cognitive decline.

Authors:  Flavio Schwarz; Stevan A Springer; Tasha K Altheide; Nissi M Varki; Pascal Gagneux; Ajit Varki
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

2.  Genetic architecture of a body colour cline in Drosophila americana.

Authors:  Lisa L Sramkoski; Wesley N McLaughlin; Arielle M Cooley; David C Yuan; Alisha John; Patricia J Wittkopp
Journal:  Mol Ecol       Date:  2020-07-13       Impact factor: 6.185

Review 3.  The Evolutionary History of Human Skin Pigmentation.

Authors:  Jorge Rocha
Journal:  J Mol Evol       Date:  2019-07-30       Impact factor: 2.395

4.  The Role of Standing Variation in Geographic Convergent Adaptation.

Authors:  Peter L Ralph; Graham Coop
Journal:  Am Nat       Date:  2015-09-08       Impact factor: 3.926

5.  Survey of Global Genetic Diversity Within the Drosophila Immune System.

Authors:  Angela M Early; J Roman Arguello; Margarida Cardoso-Moreira; Srikanth Gottipati; Jennifer K Grenier; Andrew G Clark
Journal:  Genetics       Date:  2016-11-04       Impact factor: 4.562

6.  Genetic heterogeneity underlying variation in a locally adaptive clinal trait in Pinus sylvestris revealed by a Bayesian multipopulation analysis.

Authors:  S T Kujala; T Knürr; K Kärkkäinen; D B Neale; M J Sillanpää; O Savolainen
Journal:  Heredity (Edinb)       Date:  2016-11-30       Impact factor: 3.821

7.  Sporadic occurrence of recent selective sweeps from standing variation in humans as revealed by an approximate Bayesian computation approach.

Authors:  Guillaume Laval; Etienne Patin; Pierre Boutillier; Lluis Quintana-Murci
Journal:  Genetics       Date:  2021-12-10       Impact factor: 4.402

8.  Efficient DNA sequence compression with neural networks.

Authors:  Milton Silva; Diogo Pratas; Armando J Pinho
Journal:  Gigascience       Date:  2020-11-11       Impact factor: 6.524

9.  Selective sweep for an enhancer involucrin allele identifies skin barrier adaptation out of Africa.

Authors:  Mary Elizabeth Mathyer; Erin A Brettmann; Alina D Schmidt; Zane A Goodwin; Inez Y Oh; Ashley M Quiggle; Eric Tycksen; Natasha Ramakrishnan; Scot J Matkovich; Emma Guttman-Yassky; John R Edwards; Cristina de Guzman Strong
Journal:  Nat Commun       Date:  2021-05-07       Impact factor: 14.919

10.  Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele.

Authors:  Roy Ronen; Glenn Tesler; Ali Akbari; Shay Zakov; Noah A Rosenberg; Vineet Bafna
Journal:  PLoS Genet       Date:  2015-09-24       Impact factor: 5.917

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