Literature DB >> 24505653

Connectivity subnetwork learning for pathology and developmental variations.

Yasser Ghanbari1, Alex R Smith2, Robert T Schultz3, Ragini Verma2.   

Abstract

Network representation of brain connectivity has provided a novel means of investigating brain changes arising from pathology, development or aging. The high dimensionality of these networks demands methods that are not only able to extract the patterns that highlight these sources of variation, but describe them individually. In this paper, we present a unified framework for learning subnetwork patterns of connectivity by their projective non-negative decomposition into a reconstructive basis set, as well as, additional basis sets representing development and group discrimination. In order to obtain these components, we exploit the geometrical distribution of the population in the connectivity space by using a graph-theoretical scheme that imposes locality-preserving properties. In addition, the projection of the subject networks into the basis set provides a low dimensional representation of it, that teases apart the different sources of variation in the sample, facilitating variation-specific statistical analysis. The proposed framework is applied to a study of diffusion-based connectivity in subjects with autism.

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Year:  2013        PMID: 24505653      PMCID: PMC4054863          DOI: 10.1007/978-3-642-40811-3_12

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  8 in total

1.  Learning the parts of objects by non-negative matrix factorization.

Authors:  D D Lee; H S Seung
Journal:  Nature       Date:  1999-10-21       Impact factor: 49.962

2.  Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging.

Authors:  T E J Behrens; H Johansen-Berg; M W Woolrich; S M Smith; C A M Wheeler-Kingshott; P A Boulby; G J Barker; E L Sillery; K Sheehan; O Ciccarelli; A J Thompson; J M Brady; P M Matthews
Journal:  Nat Neurosci       Date:  2003-07       Impact factor: 24.884

3.  Linear and nonlinear projective nonnegative matrix factorization.

Authors:  Zhirong Yang; Erkki Oja
Journal:  IEEE Trans Neural Netw       Date:  2010-03-25

4.  Graph embedding and extensions: a general framework for dimensionality reduction.

Authors:  Shuicheng Yan; Dong Xu; Benyu Zhang; Hong-Jiang Zhang; Qiang Yang; Stephen Lin
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2007-01       Impact factor: 6.226

Review 5.  Brain connectivity and high functioning autism: a promising path of research that needs refined models, methodological convergence, and stronger behavioral links.

Authors:  Marlies E Vissers; Michael X Cohen; Hilde M Geurts
Journal:  Neurosci Biobehav Rev       Date:  2011-09-24       Impact factor: 8.989

6.  Dominant component analysis of electrophysiological connectivity networks.

Authors:  Yasser Ghanbari; Luke Bloy; Kayhan Batmanghelich; Timothy P L Roberts; Ragini Verma
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

7.  Development of brain structural connectivity between ages 12 and 30: a 4-Tesla diffusion imaging study in 439 adolescents and adults.

Authors:  Emily L Dennis; Neda Jahanshad; Katie L McMahon; Greig I de Zubicaray; Nicholas G Martin; Ian B Hickie; Arthur W Toga; Margaret J Wright; Paul M Thompson
Journal:  Neuroimage       Date:  2012-09-14       Impact factor: 6.556

8.  Modulation of temporally coherent brain networks estimated using ICA at rest and during cognitive tasks.

Authors:  Vince D Calhoun; Kent A Kiehl; Godfrey D Pearlson
Journal:  Hum Brain Mapp       Date:  2008-07       Impact factor: 5.038

  8 in total
  4 in total

1.  Atomic dynamic functional interaction patterns for characterization of ADHD.

Authors:  Jinli Ou; Zhichao Lian; Li Xie; Xiang Li; Peng Wang; Yun Hao; Dajiang Zhu; Rongxin Jiang; Yufeng Wang; Yaowu Chen; Jing Zhang; Tianming Liu
Journal:  Hum Brain Mapp       Date:  2014-05-23       Impact factor: 5.038

2.  Towards a Quantified Network Portrait of a Population.

Authors:  Birkan Tunç; Varsha Shankar; Drew Parker; Robert T Schultz; Ragini Verma
Journal:  Inf Process Med Imaging       Date:  2015

3.  Joint analysis of band-specific functional connectivity and signal complexity in autism.

Authors:  Yasser Ghanbari; Luke Bloy; J Christopher Edgar; Lisa Blaskey; Ragini Verma; Timothy P L Roberts
Journal:  J Autism Dev Disord       Date:  2015-02

4.  On characterizing population commonalities and subject variations in brain networks.

Authors:  Yasser Ghanbari; Luke Bloy; Birkan Tunc; Varsha Shankar; Timothy P L Roberts; J Christopher Edgar; Robert T Schultz; Ragini Verma
Journal:  Med Image Anal       Date:  2015-12-01       Impact factor: 8.545

  4 in total

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