Literature DB >> 24490119

Cyanobacterial aldehyde deformylase oxygenation of aldehydes yields n-1 aldehydes and alcohols in addition to alkanes.

Kelly G Aukema1, Thomas M Makris2, Sebastian A Stoian3, Jack E Richman1, Eckard Münck3, John D Lipscomb2, Lawrence P Wackett4.   

Abstract

Aldehyde-deformylating oxygenase (ADO) catalyzes O2-dependent release of the terminal carbon of a biological substrate, octadecanal, to yield formate and heptadecane in a reaction that requires external reducing equivalents. We show here that ADO also catalyzes incorporation of an oxygen atom from O2 into the alkane product to yield alcohol and aldehyde products. Oxygenation of the alkane product is much more pronounced with C9-10 aldehyde substrates, so that use of nonanal as the substrate yields similar amounts of octane, octanal, and octanol products. When using doubly-labeled [1,2-13C]-octanal as the substrate, the heptane, heptanal and heptanol products each contained a single 13C-label in the C-1 carbons atoms. The only one-carbon product identified was formate. [18O]-O2 incorporation studies demonstrated formation of [18O]-alcohol product, but rapid solvent exchange prevented similar determination for the aldehyde product. Addition of [1-13C]-nonanol with decanal as the substrate at the outset of the reaction resulted in formation of [1-13C]-nonanal. No 13C-product was formed in the absence of decanal. ADO contains an oxygen-bridged dinuclear iron cluster. The observation of alcohol and aldehyde products derived from the initially formed alkane product suggests a reactive species similar to that formed by methane monooxygenase (MMO) and other members of the bacterial multicomponent monooxygenase family. Accordingly, characterization by EPR and Mössbauer spectroscopies shows that the electronic structure of the ADO cluster is similar, but not identical, to that of MMO hydroxylase component. In particular, the two irons of ADO reside in nearly identical environments in both the oxidized and fully reduced states, whereas those of MMOH show distinct differences. These favorable characteristics of the iron sites allow a comprehensive determination of the spin Hamiltonian parameters describing the electronic state of the diferrous cluster for the first time for any biological system. The nature of the diiron cluster and the newly recognized products from ADO catalysis hold implications for the mechanism of C-C bond cleavage.

Entities:  

Keywords:  13C-NMR; EPR; GC/MS; Mössbauer; Prochlorococcus marinus; biofuel; non-heme diiron enzyme; oxygenase

Year:  2013        PMID: 24490119      PMCID: PMC3903409          DOI: 10.1021/cs400484m

Source DB:  PubMed          Journal:  ACS Catal            Impact factor:   13.084


  47 in total

1.  Dioxygen Activation by Enzymes Containing Binuclear Non-Heme Iron Clusters.

Authors:  Bradley J. Wallar; John D. Lipscomb
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Dioxygen activation at non-heme diiron centers: characterization of intermediates in a mutant form of toluene/o-xylene monooxygenase hydroxylase.

Authors:  Leslie J Murray; Ricardo García-Serres; Sunil Naik; Boi Hanh Huynh; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2006-06-14       Impact factor: 15.419

Review 3.  Finding intermediates in the O2 activation pathways of non-heme iron oxygenases.

Authors:  E G Kovaleva; M B Neibergall; S Chakrabarty; J D Lipscomb
Journal:  Acc Chem Res       Date:  2007-06-14       Impact factor: 22.384

4.  Crystallographic and catalytic studies of the peroxide-shunt reaction in a diiron hydroxylase.

Authors:  Lucas J Bailey; Brian G Fox
Journal:  Biochemistry       Date:  2009-09-29       Impact factor: 3.162

5.  Crystal structure of a bacterial non-haem iron hydroxylase that catalyses the biological oxidation of methane.

Authors:  A C Rosenzweig; C A Frederick; S J Lippard; P Nordlund
Journal:  Nature       Date:  1993-12-09       Impact factor: 49.962

6.  Conversion of fatty aldehydes to alka(e)nes and formate by a cyanobacterial aldehyde decarbonylase: cryptic redox by an unusual dimetal oxygenase.

Authors:  Ning Li; Hanne Nørgaard; Douglas M Warui; Squire J Booker; Carsten Krebs; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2011-04-04       Impact factor: 15.419

Review 7.  Dioxygen activation in soluble methane monooxygenase.

Authors:  Christine E Tinberg; Stephen J Lippard
Journal:  Acc Chem Res       Date:  2011-03-10       Impact factor: 22.384

8.  Intermediate P* from soluble methane monooxygenase contains a diferrous cluster.

Authors:  Rahul Banerjee; Katlyn K Meier; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2013-06-13       Impact factor: 3.162

9.  Mechanistic studies on C-19 demethylation in oestrogen biosynthesis.

Authors:  M Akhtar; M R Calder; D L Corina; J N Wright
Journal:  Biochem J       Date:  1982-03-01       Impact factor: 3.857

10.  Electronic and spectroscopic studies of the non-heme reduced binuclear iron sites of two ribonucleotide reductase variants: comparison to reduced methane monooxygenase and contributions to O2 reactivity.

Authors:  Pin-Pin Wei; Andrew J Skulan; Natasa Mitić; Yi-Shan Yang; Lana Saleh; J Martin Bollinger; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

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  15 in total

Review 1.  Dioxygen Activation by Nonheme Diiron Enzymes: Diverse Dioxygen Adducts, High-Valent Intermediates, and Related Model Complexes.

Authors:  Andrew J Jasniewski; Lawrence Que
Journal:  Chem Rev       Date:  2018-02-05       Impact factor: 60.622

2.  An unusual peroxo intermediate of the arylamine oxygenase of the chloramphenicol biosynthetic pathway.

Authors:  Thomas M Makris; Van V Vu; Katlyn K Meier; Anna J Komor; Brent S Rivard; Eckard Münck; Lawrence Que; John D Lipscomb
Journal:  J Am Chem Soc       Date:  2015-01-21       Impact factor: 15.419

Review 3.  Divergent mechanisms of iron-containing enzymes for hydrocarbon biosynthesis.

Authors:  Courtney E Wise; Job L Grant; Jose A Amaya; Steven C Ratigan; Chun H Hsieh; Olivia M Manley; Thomas M Makris
Journal:  J Biol Inorg Chem       Date:  2016-12-21       Impact factor: 3.358

4.  5-Formylcytosine to cytosine conversion by C-C bond cleavage in vivo.

Authors:  Katharina Iwan; René Rahimoff; Angie Kirchner; Fabio Spada; Arne S Schröder; Olesea Kosmatchev; Shqiponja Ferizaj; Jessica Steinbacher; Edris Parsa; Markus Müller; Thomas Carell
Journal:  Nat Chem Biol       Date:  2017-11-27       Impact factor: 15.040

5.  Mechanistic insights from reaction of α-oxiranyl-aldehydes with cyanobacterial aldehyde deformylating oxygenase.

Authors:  Debasis Das; Benjamin Ellington; Bishwajit Paul; E Neil G Marsh
Journal:  ACS Chem Biol       Date:  2013-12-13       Impact factor: 5.100

6.  Aldehyde Decarbonylases: Enigmatic Enzymes of Hydrocarbon Biosynthesis.

Authors:  E Neil G Marsh; Matthew W Waugh
Journal:  ACS Catal       Date:  2013-11-01       Impact factor: 13.084

7.  Ferritin-Like Proteins: A Conserved Core for a Myriad of Enzyme Complexes.

Authors:  Rahul Banerjee; Vivek Srinivas; Hugo Lebrette
Journal:  Subcell Biochem       Date:  2022

8.  Solvent isotope effects on alkane formation by cyanobacterial aldehyde deformylating oxygenase and their mechanistic implications.

Authors:  Matthew W Waugh; E Neil G Marsh
Journal:  Biochemistry       Date:  2014-08-21       Impact factor: 3.162

9.  Structural insights into the catalytic mechanism of aldehyde-deformylating oxygenases.

Authors:  Chenjun Jia; Mei Li; Jianjun Li; Jingjing Zhang; Hongmei Zhang; Peng Cao; Xiaowei Pan; Xuefeng Lu; Wenrui Chang
Journal:  Protein Cell       Date:  2014-12-09       Impact factor: 14.870

10.  Microbial synthesis of propane by engineering valine pathway and aldehyde-deformylating oxygenase.

Authors:  Lei Zhang; Yajing Liang; Wei Wu; Xiaoming Tan; Xuefeng Lu
Journal:  Biotechnol Biofuels       Date:  2016-04-01       Impact factor: 6.040

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