Literature DB >> 24478445

Combined proteomic and transcriptomic interrogation of the venom gland of Conus geographus uncovers novel components and functional compartmentalization.

Helena Safavi-Hemami1, Hao Hu, Dhana G Gorasia, Pradip K Bandyopadhyay, Paul D Veith, Neil D Young, Eric C Reynolds, Mark Yandell, Baldomero M Olivera, Anthony W Purcell.   

Abstract

Cone snails are highly successful marine predators that use complex venoms to capture prey. At any given time, hundreds of toxins (conotoxins) are synthesized in the secretory epithelial cells of the venom gland, a long and convoluted organ that can measure 4 times the length of the snail's body. In recent years a number of studies have begun to unveil the transcriptomic, proteomic and peptidomic complexity of the venom and venom glands of a number of cone snail species. By using a combination of DIGE, bottom-up proteomics and next-generation transcriptome sequencing the present study identifies proteins involved in envenomation and conotoxin maturation, significantly extending the repertoire of known (poly)peptides expressed in the venom gland of these remarkable animals. We interrogate the molecular and proteomic composition of different sections of the venom glands of 3 specimens of the fish hunter Conus geographus and demonstrate regional variations in gene expression and protein abundance. DIGE analysis identified 1204 gel spots of which 157 showed significant regional differences in abundance as determined by biological variation analysis. Proteomic interrogation identified 342 unique proteins including those that exhibited greatest fold change. The majority of these proteins also exhibited significant changes in their mRNA expression levels validating the reliability of the experimental approach. Transcriptome sequencing further revealed a yet unknown genetic diversity of several venom gland components. Interestingly, abundant proteins that potentially form part of the injected venom mixture, such as echotoxins, phospholipase A2 and con-ikots-ikots, classified into distinct expression clusters with expression peaking in different parts of the gland. Our findings significantly enhance the known repertoire of venom gland polypeptides and provide molecular and biochemical evidence for the compartmentalization of this organ into distinct functional entities.

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Year:  2014        PMID: 24478445      PMCID: PMC3977193          DOI: 10.1074/mcp.M113.031351

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN: 1535-9476            Impact factor:   5.911


  42 in total

1.  InterProScan--an integration platform for the signature-recognition methods in InterPro.

Authors:  E M Zdobnov; R Apweiler
Journal:  Bioinformatics       Date:  2001-09       Impact factor: 6.937

2.  Anatomical correlates of venom production in Conus californicus.

Authors:  Jennifer Marshall; Wayne P Kelley; Stanislav S Rubakhin; Jon-Paul Bingham; Jonathan V Sweedler; William F Gilly
Journal:  Biol Bull       Date:  2002-08       Impact factor: 1.818

3.  Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs.

Authors:  Bastien Chevreux; Thomas Pfisterer; Bernd Drescher; Albert J Driesel; Werner E G Müller; Thomas Wetter; Sándor Suhai
Journal:  Genome Res       Date:  2004-05-12       Impact factor: 9.043

4.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

5.  Large-scale discovery of conopeptides and conoproteins in the injectable venom of a fish-hunting cone snail using a combined proteomic and transcriptomic approach.

Authors:  Aude Violette; Daniel Biass; Sébastien Dutertre; Dominique Koua; David Piquemal; Fabien Pierrat; Reto Stöcklin; Philippe Favreau
Journal:  J Proteomics       Date:  2012-06-13       Impact factor: 4.044

6.  Diversity of Conus neuropeptides.

Authors:  B M Olivera; J Rivier; C Clark; C A Ramilo; G P Corpuz; F C Abogadie; E E Mena; S R Woodward; D R Hillyard; L J Cruz
Journal:  Science       Date:  1990-07-20       Impact factor: 47.728

7.  Invertebrate vasopressin/oxytocin homologs. Characterization of peptides from Conus geographus and Conus straitus venoms.

Authors:  L J Cruz; V de Santos; G C Zafaralla; C A Ramilo; R Zeikus; W R Gray; B M Olivera
Journal:  J Biol Chem       Date:  1987-11-25       Impact factor: 5.157

8.  Bitis gabonica (Gaboon viper) snake venom gland: toward a catalog for the full-length transcripts (cDNA) and proteins.

Authors:  Ivo M B Francischetti; Van My-Pham; Jim Harrison; Mark K Garfield; José M C Ribeiro
Journal:  Gene       Date:  2004-08-04       Impact factor: 3.688

9.  The primary structure of Vipera ammodytes venom trypsin inhibitor I.

Authors:  A Ritonja; B Meloun; F Gubensek
Journal:  Biochim Biophys Acta       Date:  1983-11-14

10.  Isolation and characterization of a cone snail protease with homology to CRISP proteins of the pathogenesis-related protein superfamily.

Authors:  Trudy J Milne; Giovanni Abbenante; Joel D A Tyndall; Judy Halliday; Richard J Lewis
Journal:  J Biol Chem       Date:  2003-05-20       Impact factor: 5.157

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  20 in total

1.  Optimized deep-targeted proteotranscriptomic profiling reveals unexplored Conus toxin diversity and novel cysteine frameworks.

Authors:  Vincent Lavergne; Ivon Harliwong; Alun Jones; David Miller; Ryan J Taft; Paul F Alewood
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-06       Impact factor: 11.205

2.  Lack of Signal for the Impact of Conotoxin Gene Diversity on Speciation Rates in Cone Snails.

Authors:  Mark A Phuong; Michael E Alfaro; Gusti N Mahardika; Ristiyanti M Marwoto; Romanus Edy Prabowo; Thomas von Rintelen; Philipp W H Vogt; Jonathan R Hendricks; Nicolas Puillandre
Journal:  Syst Biol       Date:  2019-09-01       Impact factor: 15.683

3.  Conodipine-P1-3, the First Phospholipases A2 Characterized from Injected Cone Snail Venom.

Authors:  Carolina Möller; W Clay Davis; Evan Clark; Anthony DeCaprio; Frank Marí
Journal:  Mol Cell Proteomics       Date:  2019-02-14       Impact factor: 5.911

4.  Rapid expansion of the protein disulfide isomerase gene family facilitates the folding of venom peptides.

Authors:  Helena Safavi-Hemami; Qing Li; Ronneshia L Jackson; Albert S Song; Wouter Boomsma; Pradip K Bandyopadhyay; Christian W Gruber; Anthony W Purcell; Mark Yandell; Baldomero M Olivera; Lars Ellgaard
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-08       Impact factor: 11.205

Review 5.  Prey-Capture Strategies of Fish-Hunting Cone Snails: Behavior, Neurobiology and Evolution.

Authors:  Baldomero M Olivera; Jon Seger; Martin P Horvath; Alexander E Fedosov
Journal:  Brain Behav Evol       Date:  2015-09-24       Impact factor: 1.808

6.  Small Molecules in the Cone Snail Arsenal.

Authors:  Jorge L B Neves; Zhenjian Lin; Julita S Imperial; Agostinho Antunes; Vitor Vasconcelos; Baldomero M Olivera; Eric W Schmidt
Journal:  Org Lett       Date:  2015-09-30       Impact factor: 6.005

7.  Specialized insulin is used for chemical warfare by fish-hunting cone snails.

Authors:  Helena Safavi-Hemami; Joanna Gajewiak; Santhosh Karanth; Samuel D Robinson; Beatrix Ueberheide; Adam D Douglass; Amnon Schlegel; Julita S Imperial; Maren Watkins; Pradip K Bandyopadhyay; Mark Yandell; Qing Li; Anthony W Purcell; Raymond S Norton; Lars Ellgaard; Baldomero M Olivera
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-20       Impact factor: 11.205

Review 8.  Conotoxin gene superfamilies.

Authors:  Samuel D Robinson; Raymond S Norton
Journal:  Mar Drugs       Date:  2014-12-17       Impact factor: 5.118

9.  MSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphisms.

Authors:  Franziska Zickmann; Bernhard Y Renard
Journal:  Bioinformatics       Date:  2015-06-15       Impact factor: 6.937

10.  Multiomics analysis of the giant triton snail salivary gland, a crown-of-thorns starfish predator.

Authors:  U Bose; T Wang; M Zhao; C A Motti; M R Hall; S F Cummins
Journal:  Sci Rep       Date:  2017-07-20       Impact factor: 4.379

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