Literature DB >> 24477636

The strength and directionality of a halogen bond are co-determined by the magnitude and size of the σ-hole.

Michal Kolář1, Jiří Hostaš, Pavel Hobza.   

Abstract

The σ-holes of halogen atoms on various aromatic scaffolds were described in terms of their size and magnitude. The electrostatic potential maps at the CAM-B3LYP-D3(bj)/def2-QZVP level were calculated and the σ-holes of more than 100 aromatic analogues were thoroughly analysed to relate the σ-holes to the binding preferences of the halogenated compounds. Both the size and magnitude of the σ-hole increase when passing from chlorinated to iodinated analogues. Also, the σ-hole properties were studied upon chemical substitution of the aromatic ring as well as in the aromatic ring. Further, the angular variations of the interactions were investigated on a selected set of halogenbenzene complexes with argon and hydrogen fluoride (HF). In order to analyse interaction energy components, DFT-SAPT angular scans were performed. The interaction energies of bromobenzene complexes were evaluated at the CCSD(T)/complete basis set level providing the benchmark energetic data. The strength of the halogen bond between halogenbenzenes and Ar atoms and HF molecules increases while its directionality decreases when passing from chlorine to iodine. The decrease of the directionality of the halogen bond is larger for a HF-containing complex and is caused by electrostatic and exchange-repulsion energies. These findings are especially valuable for protein-halogenated ligand-binding studies, applied in the realm of rational drug development and lead optimisation.

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Year:  2014        PMID: 24477636     DOI: 10.1039/c3cp55188a

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  13 in total

1.  Pnictogen bonding in pyrazine•PnX5 (Pn = P, As, Sb and X = F, Cl, Br) complexes.

Authors:  Jindřich Fanfrlík; Wiktor Zierkiewicz; Petr Švec; Zdeňka Růžičková; Jan Řezáč; Mariusz Michalczyk; Aleš Růžička; Danuta Michalska; Pavel Hobza
Journal:  J Mol Model       Date:  2017-10-30       Impact factor: 1.810

2.  Extending Halogen-based Medicinal Chemistry to Proteins: IODO-INSULIN AS A CASE STUDY.

Authors:  Krystel El Hage; Vijay Pandyarajan; Nelson B Phillips; Brian J Smith; John G Menting; Jonathan Whittaker; Michael C Lawrence; Markus Meuwly; Michael A Weiss
Journal:  J Biol Chem       Date:  2016-11-14       Impact factor: 5.157

3.  Exploring the (Very Flat) Potential Energy Landscape of R-Br⋅⋅⋅π Interactions with Accurate CCSD(T) and SAPT Techniques.

Authors:  Kevin E Riley; Mariela Vazquez; Cole Umemura; Christopher Miller; Khanh-An Tran
Journal:  Chemistry       Date:  2016-10-27       Impact factor: 5.236

4.  Strength, character, and directionality of halogen bonds involving cationic halogen bond donors.

Authors:  Kevin E Riley; Khanh-An Tran
Journal:  Faraday Discuss       Date:  2017-10-13       Impact factor: 4.008

5.  4R- and 4S-iodophenyl hydroxyproline, 4R-pentynoyl hydroxyproline, and S-propargyl-4-thiolphenylalanine: conformationally biased and tunable amino acids for bioorthogonal reactions.

Authors:  Christina R Forbes; Anil K Pandey; Himal K Ganguly; Glenn P A Yap; Neal J Zondlo
Journal:  Org Biomol Chem       Date:  2016-01-25       Impact factor: 3.876

Review 6.  Design of Radioiodinated Pharmaceuticals: Structural Features Affecting Metabolic Stability towards in Vivo Deiodination.

Authors:  Lorenzo Cavina; Dion van der Born; Peter H M Klaren; Martin C Feiters; Otto C Boerman; Floris P J T Rutjes
Journal:  European J Org Chem       Date:  2017-04-26

Review 7.  Could Quantum Mechanical Properties Be Reflected on Classical Molecular Dynamics? The Case of Halogenated Organic Compounds of Biological Interest.

Authors:  Lucas de Azevedo Santos; Ingrid G Prandi; Teodorico C Ramalho
Journal:  Front Chem       Date:  2019-12-13       Impact factor: 5.221

Review 8.  The Halogen Bond.

Authors:  Gabriella Cavallo; Pierangelo Metrangolo; Roberto Milani; Tullio Pilati; Arri Priimagi; Giuseppe Resnati; Giancarlo Terraneo
Journal:  Chem Rev       Date:  2016-01-26       Impact factor: 60.622

9.  Structural Examination of Halogen-Bonded Co-Crystals of Tritopic Acceptors.

Authors:  Stefan N L Andree; Abhijeet S Sinha; Christer B Aakeröy
Journal:  Molecules       Date:  2018-01-13       Impact factor: 4.411

10.  The Influence of Halogenated Hypercarbon on Crystal Packing in the Series of 1-Ph-2-X-1,2-dicarba-closo-dodecaboranes (X = F, Cl, Br, I).

Authors:  Miroslav Havránek; Maksim A Samsonov; Josef Holub; Zdeňka Růžičková; Ladislav Drož; Aleš Růžička; Jindřich Fanfrlík; Drahomír Hnyk
Journal:  Molecules       Date:  2020-03-06       Impact factor: 4.411

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