| Literature DB >> 24466438 |
Danxin Wang1, Wolfgang Sadee1.
Abstract
CYP3A ranks among the most abundant cytochrome P450 enzymes in the liver, playing a dominant role in metabolic elimination of clinically used drugs. A main member in CYP3A family, CYP3A4 expression and activity vary considerably among individuals, attributable to genetic and non-genetic factors, affecting drug dosage and efficacy. However, the extent of genetic influence has remained unclear. This review assesses current knowledge on the genetic factors influencing CYP3A4 activity. Coding region CYP3A4 polymorphisms are rare and account for only a small portion of inter-person variability in CYP3A metabolism. Except for the promoter allele CYP3A4*1B with ambiguous effect on expression, common CYP3A4 regulatory polymorphisms were thought to be lacking. Recent studies have identified a relatively common regulatory polymorphism, designated CYP3A4*22 with robust effects on hepatic CYP3A4 expression. Combining CYP3A4*22 with CYP3A5 alleles *1, *3 and *7 has promise as a biomarker predicting overall CYP3A activity. Also contributing to variable expression, the role of polymorphisms in transcription factors and microRNAs is discussed.Entities:
Keywords: CYP3A4; biomarker; cytochrome P450s; polymorphism
Year: 2012 PMID: 24466438 PMCID: PMC3901424 DOI: 10.3390/jpm2040175
Source DB: PubMed Journal: J Pers Med ISSN: 2075-4426
Figure 1Schematics of the CYP3A locus and genomic structure of CYP3A4.
Coding region SNPs in CYP3A4.
| Allele | variant (cDNA) | Amino acid change | Key SNP rs# | Gene location | MAF | Ref | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Caucasian | African American | Asian | All (ESP) | ||||||||
| *2 | 664 T>C | S222P | rs55785340 | Exon 7 | 0.027 | 0 | 0 | Decreased activity | [ | ||
| *3 | 1334 T>C | M445T | rs4986910 | Exon 12 | 0–0.04 | 0–0.033 | 0 | No change | [ | ||
| *4 | 352 A>G | I118V | rs55951658 | Exon 5 | 0.015–0.033 | Decreased activity, associated with LDL | [ | ||||
| *5 | 653 C>G | P218R | rs55901263 | Exon 7 | 0 | 0 | 0.006 | Decreased activity | [ | ||
| *6 | 830_831 insA | 277 frameshift | rs4646438 | Exon 9 | 0.005 | No activity | [ | ||||
| *7 | 167 G>A | G56D | rs56324128 | Exon 3 | 0.014 | Decreased activity | [ | ||||
| *8 | 389 G>A | R130Q | rs72552799 | Exon 5 | 0.0033 | No protein | [ | ||||
| *9 | 508 G>A | V170I | rs72552798 | Exon 6 | 0.0024 | No change | [ | ||||
| *10 | 520 G>C or G>A | D174H or D174N | rs4986908 | Exon 6 | 0.003 for C | 0.012 for A | No change | [ | |||
| *11 | 1088 C>T | T363M | rs67784355 | Exon 11 | 0.0034 | 0.002 | 0.001 | Decreased protein level and activity | [ | ||
| *12 | I117 C>T | L373F | rs12721629 | Exon 11 | 0–0.004 | 0.004–0.007 | 0 | 0.001 | Decreased protein level and activity | [ | |
| *13 | 1247 C>T | P416L | rs4986909 | Exon 11 | 0–0.004 | 0–0.021 | 0–0.012 | No protein | [ | ||
| *14 | 44 T>C | L15P | rs12721634 | Exon 1 | 0–0.003 | [ | |||||
| *15 | 485 G>A | R162Q | rs4986907 | Exon 6 | 0 | 0–0.042 | 0 | 0.014 | [ | ||
| *16 | 554 C>G | T185S | rs12721627 | Exon 7 | 0.014 | 0.005 | Decreased protein level and activity | [ | |||
| *17 | 566 T>C | F189S | rs4987161 | Exon 7 | 0–0.017 | 0 | 0 | Decreased activity | [ | ||
| *18 | 878 T>C | L293P | rs28371759 | Exon 10 | 0.028 | 0.01 | No change or increased activity | Low midazolam clearance, associated with bone density | [ | ||
| *19 | 1399 C>T | P467S | rs4986913 | Exon 12 | 0–0.022 | 0 | 0–0.012 | No change | [ | ||
| *20 | 1461_1462 insA | 488 frameshift | rs7666821 | Exon 13 | <0.006 | No activity | Low midazolam clearance | [ | |||
| *21 | 956 A>G | Y319C | Exon 10 | 0.005 | [ | ||||||
Mutations in CYP3A4 and CYP3A5 as potential biomarkers for predicting CYP3A activity.
| Gene | Allele | Location, variant | MAF | dbSNP number | CYP3A4 activity |
|---|---|---|---|---|---|
|
|
| - | - | - | - |
|
|
| Intron 6, C>T | 3%–6% | rs35599367 | Decreased protein |
|
|
| Exon 9, insA | rare | rs4646438 | Frameshift |
|
|
| Exon 13, insA | rare | rs7666821 | Frameshift |
|
|
| - | - | - | - |
|
|
| Intron3, G>A | 15%–88% | rs776746 | No protein |
|
|
| Exon 11, delT | 4%–21% | rs41303343 | Frameshift |
a Reference allele; b Rare variants to be considered with large-scale parallel genotyping/sequencing in clinical practice.