Literature DB >> 24462329

pKa determination by ¹H NMR spectroscopy - an old methodology revisited.

Jacqueline Bezençon1, Matthias B Wittwer1, Brian Cutting1, Martin Smieško1, Bjoern Wagner2, Manfred Kansy2, Beat Ernst3.   

Abstract

pKa values of acids and protonated bases have an essential impact on organic synthesis, medicinal chemistry, and material and food sciences. In drug discovery and development, they are of utmost importance for the prediction of pharmacokinetic and pharmacodynamic properties. To date, various methods for the determination of pKa values are available, including UV-spectroscopic, potentiometric, and capillary electrophoretic techniques. An additional option is provided by nuclear magnetic resonance (NMR) spectroscopy. The underlying principle is the alteration of chemical shifts of NMR-active nuclei (e.g., (13)C and (1)H) depending on the protonation state of adjacent acidic or basic sites. When these chemical shifts are plotted against the pH, the inflection point of the resulting sigmoidal curve defines the pKa value. Although pKa determinations by (1)H NMR spectroscopy are reported for numerous cases, the potential of this approach is not yet fully evaluated. We therefore revisited this method with a diverse set of test compounds covering a broad range of pKa values (pKa 0.9-13.8) and made a comparison with four commonly used approaches. The methodology revealed excellent correlations (R(2)=0.99 and 0.97) with electropotentiometric and UV spectroscopic methods. Moreover, the comparison with in silico results (Epik and Marvin) also showed high correlations (R(2)=0.92 and 0.94), further confirming the reliability and utility of this approach.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  (1)H NMR spectroscopy; Dissociation constant; Physicochemical properties; Site of protonation; pK(a) determination

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Year:  2013        PMID: 24462329     DOI: 10.1016/j.jpba.2013.12.014

Source DB:  PubMed          Journal:  J Pharm Biomed Anal        ISSN: 0731-7085            Impact factor:   3.935


  9 in total

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3.  Origin of pKa Shifts of Internal Lysine Residues in SNase Studied Via Equal-Molar VMMS Simulations in Explicit Water.

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4.  Characterization of an L-α,β-diaminopropionic acid polymer with comb-like structure isolated from a poly(ε-L-lysine)-producing Streptomyces sp.

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5.  Estimating the Roles of Protonation and Electronic Polarization in Absolute Binding Affinity Simulations.

Authors:  Edward King; Ruxi Qi; Han Li; Ray Luo; Erick Aitchison
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Authors:  Khohinur Hossain; Luca Florean; Anna Del Tedesco; Elti Cattaruzza; Marco Geppi; Silvia Borsacchi; Patrizia Canton; Alvise Benedetti; Pietro Riello; Alessandro Scarso
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7.  Modelling the acid/base 1H NMR chemical shift limits of metabolites in human urine.

Authors:  Gregory D Tredwell; Jacob G Bundy; Maria De Iorio; Timothy M D Ebbels
Journal:  Metabolomics       Date:  2016-09-15       Impact factor: 4.290

Review 8.  NMR spectroscopy in drug discovery and development: Evaluation of physico-chemical properties.

Authors:  Mire Zloh
Journal:  ADMET DMPK       Date:  2019-12-11

9.  How Monoamine Oxidase A Decomposes Serotonin: An Empirical Valence Bond Simulation of the Reactive Step.

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  9 in total

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