Literature DB >> 24454272

4-Hy-droxy-3-meth-oxy-benzaldehyde thio-semicarbazone.

Adriano Bof de Oliveira1, Bárbara Regina Santos Feitosa1, Christian Näther2, Inke Jess2.   

Abstract

In the title compound, C9H11N3S, there is an intra-molecular O-H⋯O hydrogen bond involving the OH group and the adjacent methoxy O atom. The mol-ecule is essentially planar, with the maximum deviation from the mean plane of the non-H atoms being 0.1127 (14) Å for the methyl C atom. In the crystal, mol-ecules are connected via centrosymmetric pairs of N-H⋯S and O-H⋯O hydrogen bonds into a two-dimensional network parallel to (10-3).

Entities:  

Year:  2013        PMID: 24454272      PMCID: PMC3885096          DOI: 10.1107/S1600536813032303

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the in vitro anti­malarial and anti­tubercular activity of hy­droxy-meth­oxy­benzaldehyde thio­semicarbazone derivatives, see: Khanye et al. (2011 ▶). For the first report of the synthesis, see: Freund & Schander (1902 ▶). For the synthesis and crystal structure of an isomer of the title compound, see: Hao (2010 ▶).

Experimental

Crystal data

C9H11N3O2S M = 225.27 Triclinic, a = 4.5886 (5) Å b = 8.5213 (11) Å c = 13.9621 (15) Å α = 75.898 (13)° β = 87.669 (13)° γ = 77.580 (14)° V = 517.05 (10) Å3 Z = 2 Mo Kα radiation μ = 0.30 mm−1 T = 200 K 0.4 × 0.3 × 0.2 mm

Data collection

Stoe IPDS-1 diffractometer Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2008 ▶) T min = 0.865, T max = 0.982 5179 measured reflections 2211 independent reflections 1829 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.100 S = 1.03 2211 reflections 139 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.27 e Å−3 Data collection: X-AREA (Stoe & Cie, 2008 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2008 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813032303/fy2108sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813032303/fy2108Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813032303/fy2108Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11N3O2SZ = 2
Mr = 225.27F(000) = 236
Triclinic, P1Dx = 1.447 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.5886 (5) ÅCell parameters from 5179 reflections
b = 8.5213 (11) Åθ = 2.5–27.0°
c = 13.9621 (15) ŵ = 0.30 mm1
α = 75.898 (13)°T = 200 K
β = 87.669 (13)°Block, yellow
γ = 77.580 (14)°0.4 × 0.3 × 0.2 mm
V = 517.05 (10) Å3
Stoe IPDS-1 diffractometer2211 independent reflections
Radiation source: fine-focus sealed tube, Stoe IPDS-11829 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.040
φ scansθmax = 27.0°, θmin = 2.5°
Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2008)h = −5→5
Tmin = 0.865, Tmax = 0.982k = −10→10
5179 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.100w = 1/[σ2(Fo2) + (0.0666P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
2211 reflectionsΔρmax = 0.32 e Å3
139 parametersΔρmin = −0.27 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.055 (15)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1779 (3)0.65909 (18)0.22576 (11)0.0210 (3)
C20.0643 (3)0.81737 (19)0.16881 (12)0.0252 (3)
H20.12610.90960.18200.030*
C3−0.1384 (4)0.84153 (19)0.09296 (12)0.0255 (3)
H3−0.21630.95010.05460.031*
C4−0.2278 (3)0.70678 (19)0.07295 (11)0.0223 (3)
C5−0.1165 (3)0.54775 (17)0.12986 (11)0.0203 (3)
C60.0858 (3)0.52373 (18)0.20585 (11)0.0207 (3)
H60.16220.41520.24450.025*
O1−0.4253 (3)0.73483 (14)−0.00291 (9)0.0306 (3)
H1−0.47730.6463−0.00340.046*
O2−0.2264 (3)0.42408 (13)0.10546 (8)0.0268 (3)
C7−0.1404 (4)0.2626 (2)0.16928 (14)0.0354 (4)
H7A0.07610.22380.16640.053*
H7B−0.24140.18630.14810.053*
H7C−0.19690.26710.23720.053*
C80.3893 (3)0.62554 (19)0.30740 (11)0.0218 (3)
H80.45650.51450.34390.026*
N10.4870 (3)0.74084 (16)0.33129 (9)0.0222 (3)
N20.6853 (3)0.68715 (15)0.40998 (10)0.0222 (3)
H2A0.74550.58050.43620.027*
C90.7865 (3)0.79732 (18)0.44648 (11)0.0218 (3)
N30.6948 (4)0.95590 (17)0.40253 (11)0.0344 (4)
H3A0.57200.98540.35140.041*
H3B0.75651.03180.42440.041*
S11.01872 (9)0.72984 (5)0.54636 (3)0.02745 (16)
U11U22U33U12U13U23
C10.0178 (7)0.0265 (7)0.0203 (7)−0.0054 (6)−0.0038 (5)−0.0074 (6)
C20.0253 (8)0.0239 (7)0.0286 (8)−0.0074 (6)−0.0071 (6)−0.0074 (6)
C30.0270 (8)0.0216 (7)0.0265 (8)−0.0051 (6)−0.0080 (6)−0.0015 (6)
C40.0207 (7)0.0270 (7)0.0193 (7)−0.0040 (6)−0.0073 (6)−0.0054 (6)
C50.0203 (7)0.0223 (7)0.0208 (7)−0.0055 (6)−0.0027 (5)−0.0085 (6)
C60.0203 (7)0.0229 (7)0.0193 (7)−0.0041 (6)−0.0040 (6)−0.0054 (6)
O10.0350 (6)0.0285 (6)0.0283 (6)−0.0066 (5)−0.0196 (5)−0.0035 (5)
O20.0334 (6)0.0224 (5)0.0266 (6)−0.0065 (4)−0.0144 (5)−0.0064 (4)
C70.0458 (10)0.0233 (8)0.0377 (10)−0.0093 (7)−0.0219 (8)−0.0031 (7)
C80.0192 (7)0.0261 (7)0.0212 (7)−0.0049 (5)−0.0050 (6)−0.0070 (6)
N10.0197 (6)0.0278 (6)0.0204 (6)−0.0038 (5)−0.0070 (5)−0.0078 (5)
N20.0232 (6)0.0224 (6)0.0224 (7)−0.0045 (5)−0.0095 (5)−0.0068 (5)
C90.0210 (7)0.0247 (7)0.0217 (7)−0.0060 (6)−0.0020 (6)−0.0080 (6)
N30.0470 (9)0.0227 (7)0.0346 (8)−0.0065 (6)−0.0228 (7)−0.0059 (6)
S10.0345 (3)0.0250 (2)0.0248 (2)−0.00760 (16)−0.01444 (16)−0.00630 (15)
C1—C21.390 (2)O2—C71.428 (2)
C1—C61.401 (2)C7—H7A0.9800
C1—C81.4608 (19)C7—H7B0.9800
C2—C31.386 (2)C7—H7C0.9800
C2—H20.9500C8—N11.2801 (19)
C3—C41.390 (2)C8—H80.9500
C3—H30.9500N1—N21.3792 (17)
C4—O11.3643 (17)N2—C91.3404 (19)
C4—C51.393 (2)N2—H2A0.8800
C5—O21.3779 (17)C9—N31.324 (2)
C5—C61.386 (2)C9—S11.6962 (15)
C6—H60.9500N3—H3A0.8800
O1—H10.8400N3—H3B0.8800
C2—C1—C6119.42 (13)O2—C7—H7A109.5
C2—C1—C8123.13 (13)O2—C7—H7B109.5
C6—C1—C8117.45 (13)H7A—C7—H7B109.5
C3—C2—C1120.45 (13)O2—C7—H7C109.5
C3—C2—H2119.8H7A—C7—H7C109.5
C1—C2—H2119.8H7B—C7—H7C109.5
C2—C3—C4119.99 (14)N1—C8—C1122.15 (14)
C2—C3—H3120.0N1—C8—H8118.9
C4—C3—H3120.0C1—C8—H8118.9
O1—C4—C3118.45 (13)C8—N1—N2114.48 (12)
O1—C4—C5121.52 (13)C9—N2—N1120.04 (12)
C3—C4—C5120.02 (13)C9—N2—H2A120.0
O2—C5—C6124.88 (13)N1—N2—H2A120.0
O2—C5—C4115.17 (13)N3—C9—N2117.44 (14)
C6—C5—C4119.95 (13)N3—C9—S1123.06 (11)
C5—C6—C1120.17 (14)N2—C9—S1119.49 (11)
C5—C6—H6119.9C9—N3—H3A120.0
C1—C6—H6119.9C9—N3—H3B120.0
C4—O1—H1109.5H3A—N3—H3B120.0
C5—O2—C7116.19 (11)
C6—C1—C2—C30.1 (2)C2—C1—C6—C50.1 (2)
C8—C1—C2—C3−179.27 (15)C8—C1—C6—C5179.45 (13)
C1—C2—C3—C4−0.5 (3)C6—C5—O2—C75.2 (2)
C2—C3—C4—O1−179.32 (15)C4—C5—O2—C7−173.55 (15)
C2—C3—C4—C50.8 (3)C2—C1—C8—N1−0.7 (2)
O1—C4—C5—O2−1.7 (2)C6—C1—C8—N1179.91 (14)
C3—C4—C5—O2178.21 (14)C1—C8—N1—N2−179.89 (13)
O1—C4—C5—C6179.46 (14)C8—N1—N2—C9−175.18 (14)
C3—C4—C5—C6−0.6 (2)N1—N2—C9—N3−1.7 (2)
O2—C5—C6—C1−178.53 (14)N1—N2—C9—S1177.37 (11)
C4—C5—C6—C10.2 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···O20.842.242.6934 (16)114
O1—H1···O2i0.842.272.9153 (15)134
N2—H2A···S1ii0.882.593.4319 (14)161
N3—H3B···S1iii0.882.593.4540 (15)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O20.842.242.6934 (16)114
O1—H1⋯O2i 0.842.272.9153 (15)134
N2—H2A⋯S1ii 0.882.593.4319 (14)161
N3—H3B⋯S1iii 0.882.593.4540 (15)169

Symmetry codes: (i) ; (ii) ; (iii) .

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