| Literature DB >> 24454272 |
Adriano Bof de Oliveira1, Bárbara Regina Santos Feitosa1, Christian Näther2, Inke Jess2.
Abstract
In the title compound, C9H11N3S, there is an intra-molecular O-H⋯O hydrogen bond involving the OH group and the adjacent methoxy O atom. The mol-ecule is essentially planar, with the maximum deviation from the mean plane of the non-H atoms being 0.1127 (14) Å for the methyl C atom. In the crystal, mol-ecules are connected via centrosymmetric pairs of N-H⋯S and O-H⋯O hydrogen bonds into a two-dimensional network parallel to (10-3).Entities:
Year: 2013 PMID: 24454272 PMCID: PMC3885096 DOI: 10.1107/S1600536813032303
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H11N3O2S | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 5179 reflections | |
| θ = 2.5–27.0° | |
| µ = 0.30 mm−1 | |
| α = 75.898 (13)° | |
| β = 87.669 (13)° | Block, yellow |
| γ = 77.580 (14)° | 0.4 × 0.3 × 0.2 mm |
| Stoe IPDS-1 diffractometer | 2211 independent reflections |
| Radiation source: fine-focus sealed tube, Stoe IPDS-1 | 1829 reflections with |
| Graphite monochromator | |
| φ scans | θmax = 27.0°, θmin = 2.5° |
| Absorption correction: numerical ( | |
| 5179 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2211 reflections | Δρmax = 0.32 e Å−3 |
| 139 parameters | Δρmin = −0.27 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.055 (15) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.1779 (3) | 0.65909 (18) | 0.22576 (11) | 0.0210 (3) | |
| C2 | 0.0643 (3) | 0.81737 (19) | 0.16881 (12) | 0.0252 (3) | |
| H2 | 0.1261 | 0.9096 | 0.1820 | 0.030* | |
| C3 | −0.1384 (4) | 0.84153 (19) | 0.09296 (12) | 0.0255 (3) | |
| H3 | −0.2163 | 0.9501 | 0.0546 | 0.031* | |
| C4 | −0.2278 (3) | 0.70678 (19) | 0.07295 (11) | 0.0223 (3) | |
| C5 | −0.1165 (3) | 0.54775 (17) | 0.12986 (11) | 0.0203 (3) | |
| C6 | 0.0858 (3) | 0.52373 (18) | 0.20585 (11) | 0.0207 (3) | |
| H6 | 0.1622 | 0.4152 | 0.2445 | 0.025* | |
| O1 | −0.4253 (3) | 0.73483 (14) | −0.00291 (9) | 0.0306 (3) | |
| H1 | −0.4773 | 0.6463 | −0.0034 | 0.046* | |
| O2 | −0.2264 (3) | 0.42408 (13) | 0.10546 (8) | 0.0268 (3) | |
| C7 | −0.1404 (4) | 0.2626 (2) | 0.16928 (14) | 0.0354 (4) | |
| H7A | 0.0761 | 0.2238 | 0.1664 | 0.053* | |
| H7B | −0.2414 | 0.1863 | 0.1481 | 0.053* | |
| H7C | −0.1969 | 0.2671 | 0.2372 | 0.053* | |
| C8 | 0.3893 (3) | 0.62554 (19) | 0.30740 (11) | 0.0218 (3) | |
| H8 | 0.4565 | 0.5145 | 0.3439 | 0.026* | |
| N1 | 0.4870 (3) | 0.74084 (16) | 0.33129 (9) | 0.0222 (3) | |
| N2 | 0.6853 (3) | 0.68715 (15) | 0.40998 (10) | 0.0222 (3) | |
| H2A | 0.7455 | 0.5805 | 0.4362 | 0.027* | |
| C9 | 0.7865 (3) | 0.79732 (18) | 0.44648 (11) | 0.0218 (3) | |
| N3 | 0.6948 (4) | 0.95590 (17) | 0.40253 (11) | 0.0344 (4) | |
| H3A | 0.5720 | 0.9854 | 0.3514 | 0.041* | |
| H3B | 0.7565 | 1.0318 | 0.4244 | 0.041* | |
| S1 | 1.01872 (9) | 0.72984 (5) | 0.54636 (3) | 0.02745 (16) |
| C1 | 0.0178 (7) | 0.0265 (7) | 0.0203 (7) | −0.0054 (6) | −0.0038 (5) | −0.0074 (6) |
| C2 | 0.0253 (8) | 0.0239 (7) | 0.0286 (8) | −0.0074 (6) | −0.0071 (6) | −0.0074 (6) |
| C3 | 0.0270 (8) | 0.0216 (7) | 0.0265 (8) | −0.0051 (6) | −0.0080 (6) | −0.0015 (6) |
| C4 | 0.0207 (7) | 0.0270 (7) | 0.0193 (7) | −0.0040 (6) | −0.0073 (6) | −0.0054 (6) |
| C5 | 0.0203 (7) | 0.0223 (7) | 0.0208 (7) | −0.0055 (6) | −0.0027 (5) | −0.0085 (6) |
| C6 | 0.0203 (7) | 0.0229 (7) | 0.0193 (7) | −0.0041 (6) | −0.0040 (6) | −0.0054 (6) |
| O1 | 0.0350 (6) | 0.0285 (6) | 0.0283 (6) | −0.0066 (5) | −0.0196 (5) | −0.0035 (5) |
| O2 | 0.0334 (6) | 0.0224 (5) | 0.0266 (6) | −0.0065 (4) | −0.0144 (5) | −0.0064 (4) |
| C7 | 0.0458 (10) | 0.0233 (8) | 0.0377 (10) | −0.0093 (7) | −0.0219 (8) | −0.0031 (7) |
| C8 | 0.0192 (7) | 0.0261 (7) | 0.0212 (7) | −0.0049 (5) | −0.0050 (6) | −0.0070 (6) |
| N1 | 0.0197 (6) | 0.0278 (6) | 0.0204 (6) | −0.0038 (5) | −0.0070 (5) | −0.0078 (5) |
| N2 | 0.0232 (6) | 0.0224 (6) | 0.0224 (7) | −0.0045 (5) | −0.0095 (5) | −0.0068 (5) |
| C9 | 0.0210 (7) | 0.0247 (7) | 0.0217 (7) | −0.0060 (6) | −0.0020 (6) | −0.0080 (6) |
| N3 | 0.0470 (9) | 0.0227 (7) | 0.0346 (8) | −0.0065 (6) | −0.0228 (7) | −0.0059 (6) |
| S1 | 0.0345 (3) | 0.0250 (2) | 0.0248 (2) | −0.00760 (16) | −0.01444 (16) | −0.00630 (15) |
| C1—C2 | 1.390 (2) | O2—C7 | 1.428 (2) |
| C1—C6 | 1.401 (2) | C7—H7A | 0.9800 |
| C1—C8 | 1.4608 (19) | C7—H7B | 0.9800 |
| C2—C3 | 1.386 (2) | C7—H7C | 0.9800 |
| C2—H2 | 0.9500 | C8—N1 | 1.2801 (19) |
| C3—C4 | 1.390 (2) | C8—H8 | 0.9500 |
| C3—H3 | 0.9500 | N1—N2 | 1.3792 (17) |
| C4—O1 | 1.3643 (17) | N2—C9 | 1.3404 (19) |
| C4—C5 | 1.393 (2) | N2—H2A | 0.8800 |
| C5—O2 | 1.3779 (17) | C9—N3 | 1.324 (2) |
| C5—C6 | 1.386 (2) | C9—S1 | 1.6962 (15) |
| C6—H6 | 0.9500 | N3—H3A | 0.8800 |
| O1—H1 | 0.8400 | N3—H3B | 0.8800 |
| C2—C1—C6 | 119.42 (13) | O2—C7—H7A | 109.5 |
| C2—C1—C8 | 123.13 (13) | O2—C7—H7B | 109.5 |
| C6—C1—C8 | 117.45 (13) | H7A—C7—H7B | 109.5 |
| C3—C2—C1 | 120.45 (13) | O2—C7—H7C | 109.5 |
| C3—C2—H2 | 119.8 | H7A—C7—H7C | 109.5 |
| C1—C2—H2 | 119.8 | H7B—C7—H7C | 109.5 |
| C2—C3—C4 | 119.99 (14) | N1—C8—C1 | 122.15 (14) |
| C2—C3—H3 | 120.0 | N1—C8—H8 | 118.9 |
| C4—C3—H3 | 120.0 | C1—C8—H8 | 118.9 |
| O1—C4—C3 | 118.45 (13) | C8—N1—N2 | 114.48 (12) |
| O1—C4—C5 | 121.52 (13) | C9—N2—N1 | 120.04 (12) |
| C3—C4—C5 | 120.02 (13) | C9—N2—H2A | 120.0 |
| O2—C5—C6 | 124.88 (13) | N1—N2—H2A | 120.0 |
| O2—C5—C4 | 115.17 (13) | N3—C9—N2 | 117.44 (14) |
| C6—C5—C4 | 119.95 (13) | N3—C9—S1 | 123.06 (11) |
| C5—C6—C1 | 120.17 (14) | N2—C9—S1 | 119.49 (11) |
| C5—C6—H6 | 119.9 | C9—N3—H3A | 120.0 |
| C1—C6—H6 | 119.9 | C9—N3—H3B | 120.0 |
| C4—O1—H1 | 109.5 | H3A—N3—H3B | 120.0 |
| C5—O2—C7 | 116.19 (11) | ||
| C6—C1—C2—C3 | 0.1 (2) | C2—C1—C6—C5 | 0.1 (2) |
| C8—C1—C2—C3 | −179.27 (15) | C8—C1—C6—C5 | 179.45 (13) |
| C1—C2—C3—C4 | −0.5 (3) | C6—C5—O2—C7 | 5.2 (2) |
| C2—C3—C4—O1 | −179.32 (15) | C4—C5—O2—C7 | −173.55 (15) |
| C2—C3—C4—C5 | 0.8 (3) | C2—C1—C8—N1 | −0.7 (2) |
| O1—C4—C5—O2 | −1.7 (2) | C6—C1—C8—N1 | 179.91 (14) |
| C3—C4—C5—O2 | 178.21 (14) | C1—C8—N1—N2 | −179.89 (13) |
| O1—C4—C5—C6 | 179.46 (14) | C8—N1—N2—C9 | −175.18 (14) |
| C3—C4—C5—C6 | −0.6 (2) | N1—N2—C9—N3 | −1.7 (2) |
| O2—C5—C6—C1 | −178.53 (14) | N1—N2—C9—S1 | 177.37 (11) |
| C4—C5—C6—C1 | 0.2 (2) |
| H··· | ||||
| O1—H1···O2 | 0.84 | 2.24 | 2.6934 (16) | 114 |
| O1—H1···O2i | 0.84 | 2.27 | 2.9153 (15) | 134 |
| N2—H2 | 0.88 | 2.59 | 3.4319 (14) | 161 |
| N3—H3 | 0.88 | 2.59 | 3.4540 (15) | 169 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯O2 | 0.84 | 2.24 | 2.6934 (16) | 114 |
| O1—H1⋯O2i | 0.84 | 2.27 | 2.9153 (15) | 134 |
| N2—H2 | 0.88 | 2.59 | 3.4319 (14) | 161 |
| N3—H3 | 0.88 | 2.59 | 3.4540 (15) | 169 |
Symmetry codes: (i) ; (ii) ; (iii) .