Literature DB >> 21588582

2-Hy-droxy-4-meth-oxy-benzaldehyde thio-semicarbazone.

Yu-Mei Hao1.   

Abstract

The title Schiff base compound, C(9)H(11)N(3)O(2)S, was prepared by the reaction of equimolar quanti-ties of 2-hy-droxy-4-meth-oxy-benzaldehyde with thio-semicarbazide in methanol. The mol-ecule adopts a trans configuration with respect to the azo-methine group and an intra-molecular O-H⋯N hydrogen bond generates an S(6) ring. In the crystal structure, mol-ecules are linked through inter-molecular N-H⋯O and N-H⋯S hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2010        PMID: 21588582      PMCID: PMC3008052          DOI: 10.1107/S1600536810029594

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background references, see: Hao (2010 ▶). For reference structural data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C9H11N3O2S M = 225.27 Monoclinic, a = 4.929 (1) Å b = 10.519 (2) Å c = 20.357 (3) Å β = 92.838 (2)° V = 1054.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 298 K 0.17 × 0.13 × 0.12 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.952, T max = 0.966 5879 measured reflections 2247 independent reflections 1650 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.101 S = 1.04 2247 reflections 147 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810029594/hb5575sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810029594/hb5575Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11N3O2SF(000) = 472
Mr = 225.27Dx = 1.420 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1566 reflections
a = 4.929 (1) Åθ = 2.8–26.2°
b = 10.519 (2) ŵ = 0.29 mm1
c = 20.357 (3) ÅT = 298 K
β = 92.838 (2)°Block, colorless
V = 1054.2 (3) Å30.17 × 0.13 × 0.12 mm
Z = 4
Bruker SMART CCD diffractometer2247 independent reflections
Radiation source: fine-focus sealed tube1650 reflections with I > 2σ(I)
graphiteRint = 0.030
ω scansθmax = 26.9°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→6
Tmin = 0.952, Tmax = 0.966k = −13→11
5879 measured reflectionsl = −20→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0453P)2 + 0.1092P] where P = (Fo2 + 2Fc2)/3
2247 reflections(Δ/σ)max < 0.001
147 parametersΔρmax = 0.18 e Å3
4 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.6185 (3)0.11719 (14)0.11874 (8)0.0391 (4)
N20.7882 (3)0.04027 (15)0.08411 (7)0.0420 (4)
N30.9140 (4)−0.06702 (18)0.17762 (8)0.0528 (5)
O10.4001 (3)0.22381 (13)0.22458 (6)0.0520 (4)
H10.49090.17140.20550.078*
O2−0.2624 (3)0.53431 (13)0.19151 (6)0.0483 (4)
S11.12828 (11)−0.14847 (5)0.06920 (2)0.0530 (2)
C10.2729 (4)0.27756 (17)0.11180 (9)0.0370 (4)
C20.2464 (4)0.29172 (18)0.17967 (9)0.0371 (4)
C30.0662 (4)0.37755 (18)0.20376 (9)0.0419 (5)
H30.05210.38550.24900.050*
C4−0.0943 (4)0.45216 (17)0.16165 (9)0.0381 (4)
C5−0.0757 (4)0.43980 (18)0.09409 (9)0.0425 (5)
H5−0.18350.48910.06520.051*
C60.1059 (4)0.35287 (19)0.07061 (9)0.0445 (5)
H60.11710.34430.02540.053*
C7−0.4289 (4)0.61772 (19)0.15119 (11)0.0536 (6)
H7A−0.31540.67260.12670.080*
H7B−0.54020.66810.17850.080*
H7C−0.54290.56840.12130.080*
C80.4607 (4)0.18930 (18)0.08365 (9)0.0420 (5)
H80.46670.18490.03810.050*
C90.9333 (4)−0.05273 (18)0.11353 (9)0.0382 (4)
H20.799 (5)0.058 (2)0.0411 (5)0.080*
H3A0.998 (4)−0.1287 (16)0.1999 (10)0.080*
H3B0.830 (4)−0.0115 (18)0.2022 (10)0.080*
U11U22U33U12U13U23
N10.0443 (9)0.0365 (9)0.0377 (9)−0.0007 (7)0.0136 (7)−0.0049 (7)
N20.0523 (10)0.0419 (9)0.0331 (9)0.0090 (7)0.0157 (8)−0.0006 (7)
N30.0661 (12)0.0616 (12)0.0315 (9)0.0130 (9)0.0107 (8)0.0032 (8)
O10.0617 (9)0.0581 (9)0.0365 (8)0.0216 (7)0.0051 (6)−0.0001 (6)
O20.0500 (8)0.0493 (8)0.0463 (8)0.0142 (6)0.0110 (7)−0.0011 (6)
S10.0681 (4)0.0523 (3)0.0400 (3)0.0193 (3)0.0167 (3)0.0030 (2)
C10.0411 (10)0.0370 (10)0.0336 (10)−0.0025 (8)0.0084 (8)−0.0039 (8)
C20.0380 (10)0.0402 (10)0.0333 (10)−0.0004 (8)0.0049 (8)−0.0005 (8)
C30.0472 (11)0.0478 (12)0.0314 (10)0.0040 (9)0.0085 (9)−0.0041 (8)
C40.0367 (10)0.0380 (10)0.0404 (11)−0.0010 (8)0.0085 (8)−0.0007 (8)
C50.0460 (11)0.0430 (11)0.0386 (11)0.0049 (9)0.0025 (9)0.0045 (9)
C60.0545 (12)0.0485 (12)0.0311 (10)0.0008 (10)0.0072 (9)−0.0017 (8)
C70.0537 (13)0.0443 (12)0.0631 (14)0.0107 (10)0.0073 (11)0.0033 (10)
C80.0510 (12)0.0427 (11)0.0332 (10)−0.0005 (9)0.0114 (9)−0.0039 (8)
C90.0416 (11)0.0401 (11)0.0333 (10)−0.0046 (8)0.0077 (8)−0.0021 (8)
N1—C81.279 (2)C1—C21.402 (3)
N1—N21.382 (2)C1—C81.449 (3)
N2—C91.336 (2)C2—C31.374 (3)
N2—H20.899 (10)C3—C41.382 (3)
N3—C91.321 (2)C3—H30.9300
N3—H3A0.882 (9)C4—C51.389 (3)
N3—H3B0.886 (9)C5—C61.381 (3)
O1—C21.361 (2)C5—H50.9300
O1—H10.8200C6—H60.9300
O2—C41.361 (2)C7—H7A0.9600
O2—C71.432 (2)C7—H7B0.9600
S1—C91.685 (2)C7—H7C0.9600
C1—C61.393 (3)C8—H80.9300
C8—N1—N2115.42 (16)C3—C4—C5119.83 (17)
C9—N2—N1121.62 (16)C6—C5—C4118.70 (17)
C9—N2—H2122.0 (15)C6—C5—H5120.7
N1—N2—H2116.4 (15)C4—C5—H5120.7
C9—N3—H3A122.4 (15)C5—C6—C1122.82 (18)
C9—N3—H3B122.7 (15)C5—C6—H6118.6
H3A—N3—H3B114.6 (18)C1—C6—H6118.6
C2—O1—H1109.5O2—C7—H7A109.5
C4—O2—C7118.50 (16)O2—C7—H7B109.5
C6—C1—C2116.84 (17)H7A—C7—H7B109.5
C6—C1—C8119.77 (17)O2—C7—H7C109.5
C2—C1—C8123.39 (17)H7A—C7—H7C109.5
O1—C2—C3116.95 (16)H7B—C7—H7C109.5
O1—C2—C1122.03 (16)N1—C8—C1122.81 (18)
C3—C2—C1121.00 (17)N1—C8—H8118.6
C2—C3—C4120.80 (17)C1—C8—H8118.6
C2—C3—H3119.6N3—C9—N2117.57 (17)
C4—C3—H3119.6N3—C9—S1122.11 (15)
O2—C4—C3115.21 (17)N2—C9—S1120.31 (14)
O2—C4—C5124.97 (17)
D—H···AD—HH···AD···AD—H···A
N3—H3B···O2i0.89 (1)2.26 (2)2.998 (3)141.(2)
N3—H3A···O1ii0.88 (1)2.23 (1)3.076 (3)162 (2)
N2—H2···S1iii0.90 (1)2.48 (1)3.366 (3)168 (2)
O1—H1···N10.821.992.700 (2)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3B⋯O2i0.89 (1)2.26 (2)2.998 (3)141 (2)
N3—H3A⋯O1ii0.88 (1)2.23 (1)3.076 (3)162 (2)
N2—H2⋯S1iii0.90 (1)2.48 (1)3.366 (3)168 (2)
O1—H1⋯N10.821.992.700 (2)145

Symmetry codes: (i) ; (ii) ; (iii) .

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