| Literature DB >> 24454211 |
Namhun Kim1, Haneol Kim1, Sung Kwon Kang1.
Abstract
The title compound, C9H9N3O2S, is a monoclinic (C2/c) polymorph of the previously reported triclinic structure [Kang (2013 ▶). Acta Cryst. E69, o1327]. The mol-ecule is almost planar with an r.m.s. deviation of 0.069 Å from the mean plane of all non-H atoms. The benzoyl and terminal thio-urea fragments adopt a transoid conformation with respect to the central carbonyl O atom. Two intra-molecular N-H⋯O hydrogen bonds are present. In the crystal, N-H⋯O and N-H⋯S inter-actions link the mol-ecules into zigzag chains extending along the c-axis direction.Entities:
Year: 2013 PMID: 24454211 PMCID: PMC3885036 DOI: 10.1107/S1600536813030250
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H9N3O2S | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 883 reflections |
| θ = 2.8–20.7° | |
| µ = 0.30 mm−1 | |
| β = 94.166 (3)° | Block, yellow |
| 0.18 × 0.12 × 0.04 mm | |
| Bruker SMART CCD area-detector diffractometer | 1293 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 26.0°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 7756 measured reflections | |
| 1973 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 1973 reflections | Δρmax = 0.21 e Å−3 |
| 152 parameters | Δρmin = −0.23 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| C1 | 0.33533 (17) | 1.0358 (4) | 0.65485 (12) | 0.0376 (6) | |
| C2 | 0.3931 (2) | 1.1557 (4) | 0.69320 (13) | 0.0488 (7) | |
| H2 | 0.4542 | 1.1162 | 0.7031 | 0.059* | |
| C3 | 0.3604 (2) | 1.3340 (4) | 0.71691 (15) | 0.0589 (9) | |
| H3 | 0.3994 | 1.4133 | 0.7429 | 0.071* | |
| C4 | 0.2704 (2) | 1.3943 (4) | 0.70214 (14) | 0.0573 (9) | |
| H4 | 0.2492 | 1.5159 | 0.7174 | 0.069* | |
| C5 | 0.2120 (2) | 1.2761 (4) | 0.66512 (15) | 0.0563 (8) | |
| H5 | 0.1508 | 1.3161 | 0.6559 | 0.068* | |
| C6 | 0.24417 (19) | 1.0959 (4) | 0.64118 (13) | 0.0486 (7) | |
| H6 | 0.2043 | 1.0158 | 0.616 | 0.058* | |
| C7 | 0.37532 (18) | 0.8447 (4) | 0.63138 (13) | 0.0396 (7) | |
| O8 | 0.44757 (13) | 0.7726 (3) | 0.65381 (9) | 0.0561 (6) | |
| N9 | 0.32479 (17) | 0.7544 (3) | 0.58270 (11) | 0.0439 (6) | |
| H9 | 0.2806 (18) | 0.812 (4) | 0.5652 (12) | 0.039 (8)* | |
| C10 | 0.34054 (18) | 0.5751 (4) | 0.55260 (13) | 0.0384 (6) | |
| O11 | 0.28343 (12) | 0.5116 (3) | 0.51289 (9) | 0.0472 (5) | |
| N12 | 0.42172 (15) | 0.4788 (3) | 0.57068 (11) | 0.0393 (6) | |
| H12 | 0.4561 (17) | 0.535 (4) | 0.6002 (12) | 0.037 (8)* | |
| C13 | 0.45494 (17) | 0.3010 (4) | 0.54659 (13) | 0.0382 (7) | |
| S14 | 0.55856 (5) | 0.21601 (11) | 0.57483 (4) | 0.0510 (3) | |
| N15 | 0.40313 (19) | 0.2107 (4) | 0.50312 (13) | 0.0521 (7) | |
| H15A | 0.425 (2) | 0.083 (5) | 0.4869 (15) | 0.086 (11)* | |
| H15B | 0.351 (2) | 0.248 (5) | 0.4927 (15) | 0.068 (11)* |
| C1 | 0.0416 (16) | 0.0347 (14) | 0.0363 (16) | −0.0008 (11) | 0.0021 (12) | −0.0012 (12) |
| C2 | 0.0482 (18) | 0.0489 (17) | 0.0488 (19) | −0.0032 (13) | 0.0008 (14) | −0.0116 (15) |
| C3 | 0.071 (2) | 0.0495 (18) | 0.056 (2) | −0.0128 (16) | 0.0079 (17) | −0.0189 (16) |
| C4 | 0.076 (2) | 0.0399 (17) | 0.057 (2) | 0.0053 (15) | 0.0172 (17) | −0.0096 (15) |
| C5 | 0.058 (2) | 0.0545 (19) | 0.057 (2) | 0.0191 (15) | 0.0040 (15) | −0.0054 (16) |
| C6 | 0.0497 (18) | 0.0467 (17) | 0.0487 (19) | 0.0032 (13) | −0.0009 (14) | −0.0070 (14) |
| C7 | 0.0392 (17) | 0.0348 (14) | 0.0440 (18) | 0.0001 (11) | −0.0025 (13) | −0.0001 (13) |
| O8 | 0.0495 (13) | 0.0491 (12) | 0.0667 (15) | 0.0115 (10) | −0.0165 (11) | −0.0113 (10) |
| N9 | 0.0457 (15) | 0.0362 (13) | 0.0476 (16) | 0.0126 (11) | −0.0111 (12) | −0.0071 (11) |
| C10 | 0.0351 (15) | 0.0319 (14) | 0.0476 (18) | 0.0022 (11) | −0.0005 (13) | −0.0022 (13) |
| O11 | 0.0416 (11) | 0.0413 (11) | 0.0568 (13) | 0.0059 (9) | −0.0097 (10) | −0.0098 (10) |
| N12 | 0.0349 (13) | 0.0330 (12) | 0.0488 (16) | 0.0047 (10) | −0.0054 (11) | −0.0070 (11) |
| C13 | 0.0353 (15) | 0.0312 (13) | 0.0486 (18) | 0.0004 (11) | 0.0059 (13) | −0.0012 (13) |
| S14 | 0.0368 (4) | 0.0439 (4) | 0.0713 (6) | 0.0082 (3) | −0.0014 (4) | −0.0077 (4) |
| N15 | 0.0417 (17) | 0.0421 (15) | 0.071 (2) | 0.0092 (12) | −0.0036 (14) | −0.0195 (13) |
| C1—C2 | 1.384 (4) | C7—O8 | 1.216 (3) |
| C1—C6 | 1.385 (3) | C7—N9 | 1.376 (3) |
| C1—C7 | 1.494 (3) | N9—C10 | 1.381 (3) |
| C2—C3 | 1.383 (4) | N9—H9 | 0.81 (3) |
| C2—H2 | 0.93 | C10—O11 | 1.223 (3) |
| C3—C4 | 1.373 (4) | C10—N12 | 1.366 (3) |
| C3—H3 | 0.93 | N12—C13 | 1.386 (3) |
| C4—C5 | 1.367 (4) | N12—H12 | 0.86 (3) |
| C4—H4 | 0.93 | C13—N15 | 1.306 (4) |
| C5—C6 | 1.393 (4) | C13—S14 | 1.671 (3) |
| C5—H5 | 0.93 | N15—H15A | 0.98 (4) |
| C6—H6 | 0.93 | N15—H15B | 0.81 (3) |
| C2—C1—C6 | 119.0 (2) | O8—C7—N9 | 121.9 (2) |
| C2—C1—C7 | 117.4 (2) | O8—C7—C1 | 122.4 (2) |
| C6—C1—C7 | 123.6 (2) | N9—C7—C1 | 115.7 (2) |
| C3—C2—C1 | 120.4 (3) | C7—N9—C10 | 129.8 (2) |
| C3—C2—H2 | 119.8 | C7—N9—H9 | 120.5 (19) |
| C1—C2—H2 | 119.8 | C10—N9—H9 | 109.4 (19) |
| C4—C3—C2 | 120.2 (3) | O11—C10—N12 | 124.2 (2) |
| C4—C3—H3 | 119.9 | O11—C10—N9 | 120.2 (2) |
| C2—C3—H3 | 119.9 | N12—C10—N9 | 115.6 (2) |
| C5—C4—C3 | 120.2 (3) | C10—N12—C13 | 126.9 (2) |
| C5—C4—H4 | 119.9 | C10—N12—H12 | 116.6 (17) |
| C3—C4—H4 | 119.9 | C13—N12—H12 | 116.5 (17) |
| C4—C5—C6 | 120.1 (3) | N15—C13—N12 | 117.7 (2) |
| C4—C5—H5 | 120 | N15—C13—S14 | 124.1 (2) |
| C6—C5—H5 | 120 | N12—C13—S14 | 118.1 (2) |
| C1—C6—C5 | 120.1 (3) | C13—N15—H15A | 118.2 (18) |
| C1—C6—H6 | 119.9 | C13—N15—H15B | 122 (2) |
| C5—C6—H6 | 119.9 | H15A—N15—H15B | 119 (3) |
| H··· | ||||
| N9—H9···O11i | 0.81 (3) | 2.20 (3) | 2.945 (3) | 151 (2) |
| N12—H12···O8 | 0.86 (3) | 1.97 (3) | 2.661 (3) | 136 (2) |
| N15—H15 | 0.98 (4) | 2.41 (4) | 3.358 (3) | 163 (3) |
| N15—H15 | 0.81 (3) | 2.06 (3) | 2.653 (3) | 130 (3) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N9—H9⋯O11i | 0.81 (3) | 2.20 (3) | 2.945 (3) | 151 (2) |
| N12—H12⋯O8 | 0.86 (3) | 1.97 (3) | 2.661 (3) | 136 (2) |
| N15—H15 | 0.98 (4) | 2.41 (4) | 3.358 (3) | 163 (3) |
| N15—H15 | 0.81 (3) | 2.06 (3) | 2.653 (3) | 130 (3) |
Symmetry codes: (i) ; (ii) .