Literature DB >> 24454211

A monoclinic polymorph of 1-benzoyl-4-thio-biuret.

Namhun Kim1, Haneol Kim1, Sung Kwon Kang1.   

Abstract

The title compound, C9H9N3O2S, is a monoclinic (C2/c) polymorph of the previously reported triclinic structure [Kang (2013 ▶). Acta Cryst. E69, o1327]. The mol-ecule is almost planar with an r.m.s. deviation of 0.069 Å from the mean plane of all non-H atoms. The benzoyl and terminal thio-urea fragments adopt a transoid conformation with respect to the central carbonyl O atom. Two intra-molecular N-H⋯O hydrogen bonds are present. In the crystal, N-H⋯O and N-H⋯S inter-actions link the mol-ecules into zigzag chains extending along the c-axis direction.

Entities:  

Year:  2013        PMID: 24454211      PMCID: PMC3885036          DOI: 10.1107/S1600536813030250

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thia­diazole derivatives, see: Piskala et al. (2004 ▶); Castro et al. (2008 ▶). For the structure and reactivity of thia­diazole derivatives, see: Cho et al. (1996 ▶). For the structure of a thio­biuret compound, see: Kang et al. (2012 ▶) and of the monoclinic polymorph, see: Kang (2013 ▶).

Experimental

Crystal data

C9H9N3O2S M = 223.25 Monoclinic, a = 14.4259 (14) Å b = 6.6145 (6) Å c = 21.722 (2) Å β = 94.166 (3)° V = 2067.2 (3) Å3 Z = 8 Mo Kα radiation μ = 0.30 mm−1 T = 296 K 0.18 × 0.12 × 0.04 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.96, T max = 0.99 7756 measured reflections 1973 independent reflections 1293 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.115 S = 1.03 1973 reflections 152 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813030250/lr2116sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813030250/lr2116Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813030250/lr2116Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9N3O2SF(000) = 928
Mr = 223.25Dx = 1.435 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 883 reflections
a = 14.4259 (14) Åθ = 2.8–20.7°
b = 6.6145 (6) ŵ = 0.30 mm1
c = 21.722 (2) ÅT = 296 K
β = 94.166 (3)°Block, yellow
V = 2067.2 (3) Å30.18 × 0.12 × 0.04 mm
Z = 8
Bruker SMART CCD area-detector diffractometer1293 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.059
φ and ω scansθmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −14→17
Tmin = 0.96, Tmax = 0.99k = −8→3
7756 measured reflectionsl = −26→14
1973 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.047H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.115w = 1/[σ2(Fo2) + (0.0483P)2 + 0.5497P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
1973 reflectionsΔρmax = 0.21 e Å3
152 parametersΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.33533 (17)1.0358 (4)0.65485 (12)0.0376 (6)
C20.3931 (2)1.1557 (4)0.69320 (13)0.0488 (7)
H20.45421.11620.70310.059*
C30.3604 (2)1.3340 (4)0.71691 (15)0.0589 (9)
H30.39941.41330.74290.071*
C40.2704 (2)1.3943 (4)0.70214 (14)0.0573 (9)
H40.24921.51590.71740.069*
C50.2120 (2)1.2761 (4)0.66512 (15)0.0563 (8)
H50.15081.31610.65590.068*
C60.24417 (19)1.0959 (4)0.64118 (13)0.0486 (7)
H60.20431.01580.6160.058*
C70.37532 (18)0.8447 (4)0.63138 (13)0.0396 (7)
O80.44757 (13)0.7726 (3)0.65381 (9)0.0561 (6)
N90.32479 (17)0.7544 (3)0.58270 (11)0.0439 (6)
H90.2806 (18)0.812 (4)0.5652 (12)0.039 (8)*
C100.34054 (18)0.5751 (4)0.55260 (13)0.0384 (6)
O110.28343 (12)0.5116 (3)0.51289 (9)0.0472 (5)
N120.42172 (15)0.4788 (3)0.57068 (11)0.0393 (6)
H120.4561 (17)0.535 (4)0.6002 (12)0.037 (8)*
C130.45494 (17)0.3010 (4)0.54659 (13)0.0382 (7)
S140.55856 (5)0.21601 (11)0.57483 (4)0.0510 (3)
N150.40313 (19)0.2107 (4)0.50312 (13)0.0521 (7)
H15A0.425 (2)0.083 (5)0.4869 (15)0.086 (11)*
H15B0.351 (2)0.248 (5)0.4927 (15)0.068 (11)*
U11U22U33U12U13U23
C10.0416 (16)0.0347 (14)0.0363 (16)−0.0008 (11)0.0021 (12)−0.0012 (12)
C20.0482 (18)0.0489 (17)0.0488 (19)−0.0032 (13)0.0008 (14)−0.0116 (15)
C30.071 (2)0.0495 (18)0.056 (2)−0.0128 (16)0.0079 (17)−0.0189 (16)
C40.076 (2)0.0399 (17)0.057 (2)0.0053 (15)0.0172 (17)−0.0096 (15)
C50.058 (2)0.0545 (19)0.057 (2)0.0191 (15)0.0040 (15)−0.0054 (16)
C60.0497 (18)0.0467 (17)0.0487 (19)0.0032 (13)−0.0009 (14)−0.0070 (14)
C70.0392 (17)0.0348 (14)0.0440 (18)0.0001 (11)−0.0025 (13)−0.0001 (13)
O80.0495 (13)0.0491 (12)0.0667 (15)0.0115 (10)−0.0165 (11)−0.0113 (10)
N90.0457 (15)0.0362 (13)0.0476 (16)0.0126 (11)−0.0111 (12)−0.0071 (11)
C100.0351 (15)0.0319 (14)0.0476 (18)0.0022 (11)−0.0005 (13)−0.0022 (13)
O110.0416 (11)0.0413 (11)0.0568 (13)0.0059 (9)−0.0097 (10)−0.0098 (10)
N120.0349 (13)0.0330 (12)0.0488 (16)0.0047 (10)−0.0054 (11)−0.0070 (11)
C130.0353 (15)0.0312 (13)0.0486 (18)0.0004 (11)0.0059 (13)−0.0012 (13)
S140.0368 (4)0.0439 (4)0.0713 (6)0.0082 (3)−0.0014 (4)−0.0077 (4)
N150.0417 (17)0.0421 (15)0.071 (2)0.0092 (12)−0.0036 (14)−0.0195 (13)
C1—C21.384 (4)C7—O81.216 (3)
C1—C61.385 (3)C7—N91.376 (3)
C1—C71.494 (3)N9—C101.381 (3)
C2—C31.383 (4)N9—H90.81 (3)
C2—H20.93C10—O111.223 (3)
C3—C41.373 (4)C10—N121.366 (3)
C3—H30.93N12—C131.386 (3)
C4—C51.367 (4)N12—H120.86 (3)
C4—H40.93C13—N151.306 (4)
C5—C61.393 (4)C13—S141.671 (3)
C5—H50.93N15—H15A0.98 (4)
C6—H60.93N15—H15B0.81 (3)
C2—C1—C6119.0 (2)O8—C7—N9121.9 (2)
C2—C1—C7117.4 (2)O8—C7—C1122.4 (2)
C6—C1—C7123.6 (2)N9—C7—C1115.7 (2)
C3—C2—C1120.4 (3)C7—N9—C10129.8 (2)
C3—C2—H2119.8C7—N9—H9120.5 (19)
C1—C2—H2119.8C10—N9—H9109.4 (19)
C4—C3—C2120.2 (3)O11—C10—N12124.2 (2)
C4—C3—H3119.9O11—C10—N9120.2 (2)
C2—C3—H3119.9N12—C10—N9115.6 (2)
C5—C4—C3120.2 (3)C10—N12—C13126.9 (2)
C5—C4—H4119.9C10—N12—H12116.6 (17)
C3—C4—H4119.9C13—N12—H12116.5 (17)
C4—C5—C6120.1 (3)N15—C13—N12117.7 (2)
C4—C5—H5120N15—C13—S14124.1 (2)
C6—C5—H5120N12—C13—S14118.1 (2)
C1—C6—C5120.1 (3)C13—N15—H15A118.2 (18)
C1—C6—H6119.9C13—N15—H15B122 (2)
C5—C6—H6119.9H15A—N15—H15B119 (3)
D—H···AD—HH···AD···AD—H···A
N9—H9···O11i0.81 (3)2.20 (3)2.945 (3)151 (2)
N12—H12···O80.86 (3)1.97 (3)2.661 (3)136 (2)
N15—H15A···S14ii0.98 (4)2.41 (4)3.358 (3)163 (3)
N15—H15B···O110.81 (3)2.06 (3)2.653 (3)130 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N9—H9⋯O11i 0.81 (3)2.20 (3)2.945 (3)151 (2)
N12—H12⋯O80.86 (3)1.97 (3)2.661 (3)136 (2)
N15—H15A⋯S14ii 0.98 (4)2.41 (4)3.358 (3)163 (3)
N15—H15B⋯O110.81 (3)2.06 (3)2.653 (3)130 (3)

Symmetry codes: (i) ; (ii) .

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