| Literature DB >> 22347017 |
Sung Kwon Kang1, Nam Sook Cho, Min Kyeong Jeon.
Abstract
IN THE TITLE COMPOUND [SYSTEMATIC NAME: N-(carbamoyl-carb-a-mo-thio-yl)benzamide], C(9)H(9)N(3)O(2)S, the benzoyl and terminal urea fragments adopt cisoid and transoid conformations, respectively, with respect to the S atom. The benzoyl and thio-biuret groups are almost coplanar, making a dihedral angle of 8.48 (5)°. The mol-ecular structure is stabilized by an intra-molecular N-H⋯O hydrogen bond. In the crystal, N-H⋯O and N-H⋯S hydrogen bonds link the mol-ecules into a sheet parallel to the bc plane.Entities:
Year: 2012 PMID: 22347017 PMCID: PMC3275072 DOI: 10.1107/S1600536812000621
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H9N3O2S | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2609 reflections |
| θ = 3.2–28.5° | |
| µ = 0.30 mm−1 | |
| β = 106.693 (1)° | Block, yellow |
| 0.29 × 0.24 × 0.21 mm | |
| Bruker SMART CCD area-detector diffractometer | 1369 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.5°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 7908 measured reflections | |
| 1866 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1866 reflections | (Δ/σ)max < 0.001 |
| 152 parameters | Δρmax = 0.39 e Å−3 |
| 0 restraints | Δρmin = −0.48 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.61686 (19) | 0.18189 (16) | 0.04253 (11) | 0.0448 (5) | |
| C2 | 0.5827 (2) | 0.28638 (18) | 0.03339 (13) | 0.0552 (6) | |
| H2 | 0.5944 | 0.3279 | 0.0822 | 0.066* | |
| C3 | 0.5314 (2) | 0.3297 (2) | −0.04751 (14) | 0.0660 (7) | |
| H3 | 0.5089 | 0.4001 | −0.053 | 0.079* | |
| C4 | 0.5136 (2) | 0.2690 (2) | −0.11972 (13) | 0.0667 (7) | |
| H4 | 0.4788 | 0.2983 | −0.1742 | 0.08* | |
| C5 | 0.5469 (2) | 0.1655 (2) | −0.11173 (13) | 0.0674 (7) | |
| H5 | 0.5345 | 0.1247 | −0.1609 | 0.081* | |
| C6 | 0.5988 (2) | 0.12116 (19) | −0.03144 (12) | 0.0587 (6) | |
| H6 | 0.6217 | 0.0508 | −0.0266 | 0.07* | |
| C7 | 0.6705 (2) | 0.14132 (16) | 0.13236 (11) | 0.0470 (5) | |
| O8 | 0.67319 (17) | 0.19421 (11) | 0.19501 (8) | 0.0635 (5) | |
| N9 | 0.71681 (18) | 0.03965 (14) | 0.13835 (10) | 0.0505 (5) | |
| H9 | 0.718 (2) | 0.0044 (17) | 0.0909 (16) | 0.069 (7)* | |
| C10 | 0.7608 (2) | −0.02204 (16) | 0.21000 (12) | 0.0483 (5) | |
| S11 | 0.77062 (8) | 0.00861 (5) | 0.31016 (3) | 0.0797 (3) | |
| N12 | 0.79787 (18) | −0.12067 (14) | 0.19313 (10) | 0.0521 (5) | |
| H12 | 0.8182 (19) | −0.1644 (17) | 0.2370 (13) | 0.048 (6)* | |
| C13 | 0.7888 (2) | −0.16766 (17) | 0.11369 (12) | 0.0487 (5) | |
| O14 | 0.75791 (17) | −0.11737 (11) | 0.04566 (8) | 0.0623 (5) | |
| N15 | 0.8183 (2) | −0.26820 (15) | 0.11896 (13) | 0.0567 (5) | |
| H15A | 0.821 (2) | −0.307 (2) | 0.1667 (17) | 0.079 (8)* | |
| H15B | 0.799 (2) | −0.3006 (19) | 0.0700 (16) | 0.073 (7)* |
| C1 | 0.0499 (12) | 0.0499 (13) | 0.0359 (9) | −0.0032 (9) | 0.0143 (8) | −0.0002 (8) |
| C2 | 0.0676 (14) | 0.0537 (14) | 0.0420 (10) | 0.0019 (11) | 0.0121 (10) | 0.0022 (9) |
| C3 | 0.0755 (16) | 0.0629 (16) | 0.0553 (13) | 0.0088 (12) | 0.0120 (11) | 0.0133 (11) |
| C4 | 0.0681 (15) | 0.089 (2) | 0.0405 (11) | 0.0116 (14) | 0.0108 (10) | 0.0141 (11) |
| C5 | 0.0719 (15) | 0.091 (2) | 0.0353 (10) | 0.0112 (14) | 0.0090 (10) | −0.0051 (11) |
| C6 | 0.0728 (14) | 0.0609 (14) | 0.0390 (10) | 0.0069 (11) | 0.0106 (10) | −0.0048 (9) |
| C7 | 0.0595 (12) | 0.0436 (12) | 0.0370 (10) | −0.0049 (9) | 0.0123 (9) | −0.0008 (8) |
| O8 | 0.1056 (13) | 0.0474 (9) | 0.0352 (7) | 0.0069 (8) | 0.0168 (7) | −0.0053 (6) |
| N9 | 0.0797 (13) | 0.0404 (11) | 0.0314 (8) | −0.0001 (9) | 0.0160 (8) | −0.0016 (7) |
| C10 | 0.0670 (13) | 0.0382 (12) | 0.0379 (10) | −0.0111 (9) | 0.0122 (9) | −0.0014 (8) |
| S11 | 0.1564 (8) | 0.0453 (4) | 0.0330 (3) | 0.0008 (4) | 0.0199 (3) | −0.0030 (2) |
| N12 | 0.0813 (13) | 0.0401 (10) | 0.0338 (8) | −0.0013 (9) | 0.0148 (8) | 0.0025 (7) |
| C13 | 0.0654 (13) | 0.0445 (13) | 0.0395 (10) | 0.0004 (10) | 0.0206 (9) | −0.0001 (8) |
| O14 | 0.1069 (13) | 0.0474 (9) | 0.0381 (7) | 0.0104 (8) | 0.0296 (7) | 0.0046 (6) |
| N15 | 0.0886 (14) | 0.0447 (12) | 0.0414 (10) | 0.0072 (10) | 0.0262 (9) | 0.0034 (8) |
| C1—C2 | 1.382 (3) | C7—O8 | 1.213 (2) |
| C1—C6 | 1.394 (3) | C7—N9 | 1.383 (3) |
| C1—C7 | 1.493 (2) | N9—C10 | 1.369 (2) |
| C2—C3 | 1.381 (3) | N9—H9 | 0.89 (2) |
| C2—H2 | 0.93 | C10—N12 | 1.372 (3) |
| C3—C4 | 1.371 (3) | C10—S11 | 1.642 (2) |
| C3—H3 | 0.93 | N12—C13 | 1.398 (2) |
| C4—C5 | 1.368 (3) | N12—H12 | 0.88 (2) |
| C4—H4 | 0.93 | C13—O14 | 1.236 (2) |
| C5—C6 | 1.379 (3) | C13—N15 | 1.321 (3) |
| C5—H5 | 0.93 | N15—H15A | 0.91 (3) |
| C6—H6 | 0.93 | N15—H15B | 0.87 (3) |
| C2—C1—C6 | 118.77 (18) | O8—C7—N9 | 122.94 (17) |
| C2—C1—C7 | 117.03 (17) | O8—C7—C1 | 122.10 (19) |
| C6—C1—C7 | 124.20 (19) | N9—C7—C1 | 114.96 (16) |
| C3—C2—C1 | 120.6 (2) | C10—N9—C7 | 128.94 (17) |
| C3—C2—H2 | 119.7 | C10—N9—H9 | 110.5 (15) |
| C1—C2—H2 | 119.7 | C7—N9—H9 | 120.5 (14) |
| C4—C3—C2 | 120.1 (2) | N9—C10—N12 | 114.10 (17) |
| C4—C3—H3 | 120 | N9—C10—S11 | 127.48 (17) |
| C2—C3—H3 | 120 | N12—C10—S11 | 118.40 (15) |
| C5—C4—C3 | 120.0 (2) | C10—N12—C13 | 129.15 (17) |
| C5—C4—H4 | 120 | C10—N12—H12 | 116.3 (13) |
| C3—C4—H4 | 120 | C13—N12—H12 | 113.8 (13) |
| C4—C5—C6 | 120.6 (2) | O14—C13—N15 | 124.21 (19) |
| C4—C5—H5 | 119.7 | O14—C13—N12 | 121.74 (19) |
| C6—C5—H5 | 119.7 | N15—C13—N12 | 114.05 (18) |
| C5—C6—C1 | 119.9 (2) | C13—N15—H15A | 122.3 (16) |
| C5—C6—H6 | 120 | C13—N15—H15B | 114.8 (16) |
| C1—C6—H6 | 120 | H15A—N15—H15B | 117 (2) |
| H··· | ||||
| N9—H9···O14 | 0.89 (2) | 1.82 (2) | 2.617 (2) | 147 (2) |
| N12—H12···O8i | 0.88 (2) | 2.11 (2) | 2.946 (2) | 158.7 (18) |
| N15—H15A···O8i | 0.91 (3) | 2.22 (3) | 3.025 (2) | 147 (2) |
| N15—H15A···S11i | 0.91 (3) | 2.61 (3) | 3.312 (2) | 134 (2) |
| N15—H15B···O14ii | 0.87 (3) | 2.08 (3) | 2.943 (2) | 177 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N9—H9⋯O14 | 0.89 (2) | 1.82 (2) | 2.617 (2) | 147 (2) |
| N12—H12⋯O8i | 0.88 (2) | 2.11 (2) | 2.946 (2) | 158.7 (18) |
| N15—H15 | 0.91 (3) | 2.22 (3) | 3.025 (2) | 147 (2) |
| N15—H15 | 0.91 (3) | 2.61 (3) | 3.312 (2) | 134 (2) |
| N15—H15 | 0.87 (3) | 2.08 (3) | 2.943 (2) | 177 (2) |
Symmetry codes: (i) ; (ii) .