Literature DB >> 22347017

1-Benzoyl-2-thio-biuret.

Sung Kwon Kang1, Nam Sook Cho, Min Kyeong Jeon.   

Abstract

IN THE TITLE COMPOUND [SYSTEMATIC NAME: N-(carbamoyl-carb-a-mo-thio-yl)benzamide], C(9)H(9)N(3)O(2)S, the benzoyl and terminal urea fragments adopt cisoid and transoid conformations, respectively, with respect to the S atom. The benzoyl and thio-biuret groups are almost coplanar, making a dihedral angle of 8.48 (5)°. The mol-ecular structure is stabilized by an intra-molecular N-H⋯O hydrogen bond. In the crystal, N-H⋯O and N-H⋯S hydrogen bonds link the mol-ecules into a sheet parallel to the bc plane.

Entities:  

Year:  2012        PMID: 22347017      PMCID: PMC3275072          DOI: 10.1107/S1600536812000621

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures and reactivity of thia­diazole derivatives, see: Cho et al. (1991a ▶,b ▶, 1996 ▶); Parkanyi et al. (1989 ▶). For the biological activity of thia­diazole derivatives, see: Piskala et al. (2004 ▶); Castro et al. (2008 ▶).

Experimental

Crystal data

C9H9N3O2S M = 223.25 Monoclinic, a = 10.4583 (3) Å b = 12.8103 (4) Å c = 16.1830 (5) Å β = 106.693 (1)° V = 2076.73 (11) Å3 Z = 8 Mo Kα radiation μ = 0.30 mm−1 T = 296 K 0.29 × 0.24 × 0.21 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.911, T max = 0.934 7908 measured reflections 1866 independent reflections 1369 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.114 S = 1.09 1866 reflections 152 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.48 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812000621/is5045sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812000621/is5045Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812000621/is5045Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9N3O2SF(000) = 928
Mr = 223.25Dx = 1.428 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2609 reflections
a = 10.4583 (3) Åθ = 3.2–28.5°
b = 12.8103 (4) ŵ = 0.30 mm1
c = 16.1830 (5) ÅT = 296 K
β = 106.693 (1)°Block, yellow
V = 2076.73 (11) Å30.29 × 0.24 × 0.21 mm
Z = 8
Bruker SMART CCD area-detector diffractometer1369 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 25.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −12→8
Tmin = 0.911, Tmax = 0.934k = −13→15
7908 measured reflectionsl = −19→10
1866 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0586P)2 + 0.3051P] where P = (Fo2 + 2Fc2)/3
1866 reflections(Δ/σ)max < 0.001
152 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.48 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.61686 (19)0.18189 (16)0.04253 (11)0.0448 (5)
C20.5827 (2)0.28638 (18)0.03339 (13)0.0552 (6)
H20.59440.32790.08220.066*
C30.5314 (2)0.3297 (2)−0.04751 (14)0.0660 (7)
H30.50890.4001−0.0530.079*
C40.5136 (2)0.2690 (2)−0.11972 (13)0.0667 (7)
H40.47880.2983−0.17420.08*
C50.5469 (2)0.1655 (2)−0.11173 (13)0.0674 (7)
H50.53450.1247−0.16090.081*
C60.5988 (2)0.12116 (19)−0.03144 (12)0.0587 (6)
H60.62170.0508−0.02660.07*
C70.6705 (2)0.14132 (16)0.13236 (11)0.0470 (5)
O80.67319 (17)0.19421 (11)0.19501 (8)0.0635 (5)
N90.71681 (18)0.03965 (14)0.13835 (10)0.0505 (5)
H90.718 (2)0.0044 (17)0.0909 (16)0.069 (7)*
C100.7608 (2)−0.02204 (16)0.21000 (12)0.0483 (5)
S110.77062 (8)0.00861 (5)0.31016 (3)0.0797 (3)
N120.79787 (18)−0.12067 (14)0.19313 (10)0.0521 (5)
H120.8182 (19)−0.1644 (17)0.2370 (13)0.048 (6)*
C130.7888 (2)−0.16766 (17)0.11369 (12)0.0487 (5)
O140.75791 (17)−0.11737 (11)0.04566 (8)0.0623 (5)
N150.8183 (2)−0.26820 (15)0.11896 (13)0.0567 (5)
H15A0.821 (2)−0.307 (2)0.1667 (17)0.079 (8)*
H15B0.799 (2)−0.3006 (19)0.0700 (16)0.073 (7)*
U11U22U33U12U13U23
C10.0499 (12)0.0499 (13)0.0359 (9)−0.0032 (9)0.0143 (8)−0.0002 (8)
C20.0676 (14)0.0537 (14)0.0420 (10)0.0019 (11)0.0121 (10)0.0022 (9)
C30.0755 (16)0.0629 (16)0.0553 (13)0.0088 (12)0.0120 (11)0.0133 (11)
C40.0681 (15)0.089 (2)0.0405 (11)0.0116 (14)0.0108 (10)0.0141 (11)
C50.0719 (15)0.091 (2)0.0353 (10)0.0112 (14)0.0090 (10)−0.0051 (11)
C60.0728 (14)0.0609 (14)0.0390 (10)0.0069 (11)0.0106 (10)−0.0048 (9)
C70.0595 (12)0.0436 (12)0.0370 (10)−0.0049 (9)0.0123 (9)−0.0008 (8)
O80.1056 (13)0.0474 (9)0.0352 (7)0.0069 (8)0.0168 (7)−0.0053 (6)
N90.0797 (13)0.0404 (11)0.0314 (8)−0.0001 (9)0.0160 (8)−0.0016 (7)
C100.0670 (13)0.0382 (12)0.0379 (10)−0.0111 (9)0.0122 (9)−0.0014 (8)
S110.1564 (8)0.0453 (4)0.0330 (3)0.0008 (4)0.0199 (3)−0.0030 (2)
N120.0813 (13)0.0401 (10)0.0338 (8)−0.0013 (9)0.0148 (8)0.0025 (7)
C130.0654 (13)0.0445 (13)0.0395 (10)0.0004 (10)0.0206 (9)−0.0001 (8)
O140.1069 (13)0.0474 (9)0.0381 (7)0.0104 (8)0.0296 (7)0.0046 (6)
N150.0886 (14)0.0447 (12)0.0414 (10)0.0072 (10)0.0262 (9)0.0034 (8)
C1—C21.382 (3)C7—O81.213 (2)
C1—C61.394 (3)C7—N91.383 (3)
C1—C71.493 (2)N9—C101.369 (2)
C2—C31.381 (3)N9—H90.89 (2)
C2—H20.93C10—N121.372 (3)
C3—C41.371 (3)C10—S111.642 (2)
C3—H30.93N12—C131.398 (2)
C4—C51.368 (3)N12—H120.88 (2)
C4—H40.93C13—O141.236 (2)
C5—C61.379 (3)C13—N151.321 (3)
C5—H50.93N15—H15A0.91 (3)
C6—H60.93N15—H15B0.87 (3)
C2—C1—C6118.77 (18)O8—C7—N9122.94 (17)
C2—C1—C7117.03 (17)O8—C7—C1122.10 (19)
C6—C1—C7124.20 (19)N9—C7—C1114.96 (16)
C3—C2—C1120.6 (2)C10—N9—C7128.94 (17)
C3—C2—H2119.7C10—N9—H9110.5 (15)
C1—C2—H2119.7C7—N9—H9120.5 (14)
C4—C3—C2120.1 (2)N9—C10—N12114.10 (17)
C4—C3—H3120N9—C10—S11127.48 (17)
C2—C3—H3120N12—C10—S11118.40 (15)
C5—C4—C3120.0 (2)C10—N12—C13129.15 (17)
C5—C4—H4120C10—N12—H12116.3 (13)
C3—C4—H4120C13—N12—H12113.8 (13)
C4—C5—C6120.6 (2)O14—C13—N15124.21 (19)
C4—C5—H5119.7O14—C13—N12121.74 (19)
C6—C5—H5119.7N15—C13—N12114.05 (18)
C5—C6—C1119.9 (2)C13—N15—H15A122.3 (16)
C5—C6—H6120C13—N15—H15B114.8 (16)
C1—C6—H6120H15A—N15—H15B117 (2)
D—H···AD—HH···AD···AD—H···A
N9—H9···O140.89 (2)1.82 (2)2.617 (2)147 (2)
N12—H12···O8i0.88 (2)2.11 (2)2.946 (2)158.7 (18)
N15—H15A···O8i0.91 (3)2.22 (3)3.025 (2)147 (2)
N15—H15A···S11i0.91 (3)2.61 (3)3.312 (2)134 (2)
N15—H15B···O14ii0.87 (3)2.08 (3)2.943 (2)177 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N9—H9⋯O140.89 (2)1.82 (2)2.617 (2)147 (2)
N12—H12⋯O8i0.88 (2)2.11 (2)2.946 (2)158.7 (18)
N15—H15A⋯O8i0.91 (3)2.22 (3)3.025 (2)147 (2)
N15—H15A⋯S11i0.91 (3)2.61 (3)3.312 (2)134 (2)
N15—H15B⋯O14ii0.87 (3)2.08 (3)2.943 (2)177 (2)

Symmetry codes: (i) ; (ii) .

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