Literature DB >> 24109399

1-Benzoyl-4-thio-biuret.

Sung Kwon Kang1.   

Abstract

IN THE TITLE COMPOUND (SYSTEMATIC NAME: {[(phenyl-formamido)-carbon-yl]amino}-methane-thio-amide), C9H9N3O2S, both benzoyl and terminal thio-urea fragments adopt transoid conformations with respect to the central carbonyl O atom. The benzoyl and thio-biuret groups are almost coplanar, making a dihedral angle of 4.40 (8)°. The mol-ecular structure is stabilized by two intra-molecular N-H⋯O hydrogen bonds. In the crystal, N-H⋯O and N-H⋯S hydrogen bonds link the mol-ecules into a tape running along [101].

Entities:  

Year:  2013        PMID: 24109399      PMCID: PMC3793812          DOI: 10.1107/S1600536813019983

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure and reactivity of thia­diazole derivatives, see: Cho, Ra et al. (1996 ▶); Cho, Cho et al. (1996 ▶). For the structure of a thio­biuret isomer, see: Kang et al. (2012 ▶).

Experimental

Crystal data

C9H9N3O2S M = 223.25 Triclinic, a = 5.6616 (1) Å b = 7.8407 (2) Å c = 11.7631 (3) Å α = 97.169 (2)° β = 94.992 (3)° γ = 101.390 (2)° V = 504.53 (2) Å3 Z = 2 Mo Kα radiation μ = 0.30 mm−1 T = 296 K 0.2 × 0.15 × 0.07 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.94, T max = 0.97 17356 measured reflections 2516 independent reflections 1485 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.097 S = 0.87 2516 reflections 152 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2013 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2013 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813019983/is5292sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813019983/is5292Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813019983/is5292Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9N3O2SZ = 2
Mr = 223.25F(000) = 232
Triclinic, P1Dx = 1.47 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.6616 (1) ÅCell parameters from 3132 reflections
b = 7.8407 (2) Åθ = 2.7–22.3°
c = 11.7631 (3) ŵ = 0.30 mm1
α = 97.169 (2)°T = 296 K
β = 94.992 (3)°Block, yellow
γ = 101.390 (2)°0.2 × 0.15 × 0.07 mm
V = 504.53 (2) Å3
Bruker SMART CCD diffractometer1485 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.055
φ and ω scansθmax = 28.3°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −7→7
Tmin = 0.94, Tmax = 0.97k = −10→10
17356 measured reflectionsl = −15→15
2516 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.097w = 1/[σ2(Fo2) + (0.052P)2] where P = (Fo2 + 2Fc2)/3
S = 0.87(Δ/σ)max < 0.001
2516 reflectionsΔρmax = 0.16 e Å3
152 parametersΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.0374 (3)0.8224 (2)−0.12506 (14)0.0447 (4)
C20.2488 (3)0.9206 (2)−0.15393 (16)0.0597 (5)
H20.38810.9477−0.10140.072*
C30.2552 (4)0.9785 (3)−0.25952 (19)0.0729 (6)
H30.3981.0453−0.27780.087*
C40.0539 (4)0.9383 (3)−0.33677 (18)0.0723 (6)
H40.060.9763−0.40850.087*
C5−0.1598 (4)0.8419 (3)−0.31035 (18)0.0753 (6)
H5−0.29790.8154−0.36360.09*
C6−0.1672 (3)0.7846 (3)−0.20373 (16)0.0615 (5)
H6−0.31140.7203−0.18510.074*
C70.0480 (3)0.7661 (2)−0.00927 (14)0.0442 (4)
O80.2338 (2)0.80629 (17)0.05733 (11)0.0633 (4)
N9−0.1594 (2)0.66558 (19)0.02071 (12)0.0467 (4)
H9−0.284 (3)0.634 (2)−0.0281 (16)0.054 (5)*
C10−0.1998 (3)0.6059 (2)0.12532 (14)0.0446 (4)
O11−0.3996 (2)0.52249 (17)0.13780 (10)0.0603 (4)
N12−0.0057 (2)0.64570 (19)0.20766 (11)0.0467 (4)
H120.131 (4)0.707 (2)0.1906 (17)0.067 (6)*
C130.0039 (3)0.6057 (2)0.31929 (13)0.0447 (4)
S140.27039 (8)0.66392 (7)0.40142 (4)0.05930 (19)
N15−0.1971 (3)0.5267 (3)0.35341 (15)0.0646 (5)
H15A−0.336 (4)0.507 (2)0.3052 (18)0.075 (6)*
H15B−0.199 (3)0.486 (2)0.4173 (18)0.066 (6)*
U11U22U33U12U13U23
C10.0468 (9)0.0459 (10)0.0402 (9)0.0048 (8)0.0046 (7)0.0100 (8)
C20.0539 (10)0.0726 (13)0.0505 (11)0.0013 (9)0.0049 (8)0.0214 (10)
C30.0714 (13)0.0858 (16)0.0630 (14)0.0016 (12)0.0175 (11)0.0337 (12)
C40.0944 (16)0.0782 (15)0.0503 (12)0.0174 (13)0.0138 (12)0.0294 (11)
C50.0810 (15)0.0890 (16)0.0523 (12)0.0069 (13)−0.0107 (11)0.0263 (11)
C60.0564 (11)0.0714 (13)0.0518 (12)−0.0029 (9)−0.0038 (9)0.0230 (10)
C70.0403 (9)0.0483 (10)0.0410 (9)0.0009 (7)0.0013 (7)0.0102 (8)
O80.0426 (6)0.0882 (10)0.0501 (7)−0.0140 (6)−0.0047 (6)0.0269 (7)
N90.0392 (7)0.0609 (10)0.0353 (8)−0.0021 (7)−0.0023 (6)0.0141 (7)
C100.0411 (9)0.0546 (11)0.0349 (9)0.0016 (8)0.0012 (7)0.0099 (8)
O110.0397 (6)0.0898 (10)0.0432 (7)−0.0107 (6)−0.0017 (5)0.0213 (6)
N120.0370 (7)0.0637 (10)0.0359 (8)−0.0022 (7)0.0008 (6)0.0165 (7)
C130.0401 (8)0.0588 (11)0.0355 (9)0.0069 (8)0.0047 (7)0.0129 (8)
S140.0402 (2)0.0911 (4)0.0424 (3)0.0002 (2)−0.00342 (18)0.0213 (2)
N150.0403 (8)0.1120 (15)0.0414 (9)0.0026 (9)0.0021 (7)0.0336 (10)
C1—C61.377 (2)C7—O81.2181 (18)
C1—C21.383 (2)C7—N91.378 (2)
C1—C71.483 (2)N9—C101.391 (2)
C2—C31.376 (3)N9—H90.843 (18)
C2—H20.93C10—O111.2205 (18)
C3—C41.353 (3)C10—N121.3591 (19)
C3—H30.93N12—C131.387 (2)
C4—C51.377 (3)N12—H120.882 (19)
C4—H40.93C13—N151.305 (2)
C5—C61.385 (3)C13—S141.6679 (16)
C5—H50.93N15—H15A0.91 (2)
C6—H60.93N15—H15B0.85 (2)
C6—C1—C2118.74 (16)O8—C7—N9120.79 (15)
C6—C1—C7124.45 (15)O8—C7—C1121.33 (14)
C2—C1—C7116.81 (15)N9—C7—C1117.87 (14)
C3—C2—C1120.69 (18)C7—N9—C10128.80 (14)
C3—C2—H2119.7C7—N9—H9119.4 (12)
C1—C2—H2119.7C10—N9—H9111.8 (12)
C4—C3—C2120.02 (18)O11—C10—N12124.46 (15)
C4—C3—H3120O11—C10—N9119.83 (14)
C2—C3—H3120N12—C10—N9115.71 (14)
C3—C4—C5120.70 (19)C10—N12—C13127.81 (14)
C3—C4—H4119.7C10—N12—H12117.8 (13)
C5—C4—H4119.7C13—N12—H12114.4 (13)
C4—C5—C6119.38 (19)N15—C13—N12117.68 (14)
C4—C5—H5120.3N15—C13—S14124.41 (13)
C6—C5—H5120.3N12—C13—S14117.91 (12)
C1—C6—C5120.46 (18)C13—N15—H15A118.8 (13)
C1—C6—H6119.8C13—N15—H15B121.9 (13)
C5—C6—H6119.8H15A—N15—H15B119.1 (18)
D—H···AD—HH···AD···AD—H···A
N9—H9···O11i0.843 (18)2.172 (18)2.9891 (18)163.3 (16)
N12—H12···O80.882 (19)1.919 (19)2.6171 (17)135.0 (17)
N15—H15A···O110.91 (2)1.99 (2)2.684 (2)132.0 (17)
N15—H15B···S14ii0.85 (2)2.58 (2)3.4295 (17)171.3 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N9—H9⋯O11i 0.843 (18)2.172 (18)2.9891 (18)163.3 (16)
N12—H12⋯O80.882 (19)1.919 (19)2.6171 (17)135.0 (17)
N15—H15A⋯O110.91 (2)1.99 (2)2.684 (2)132.0 (17)
N15—H15B⋯S14ii 0.85 (2)2.58 (2)3.4295 (17)171.3 (17)

Symmetry codes: (i) ; (ii) .

  1 in total

1.  1-Benzoyl-2-thio-biuret.

Authors:  Sung Kwon Kang; Nam Sook Cho; Min Kyeong Jeon
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-14
  1 in total
  1 in total

1.  A monoclinic polymorph of 1-benzoyl-4-thio-biuret.

Authors:  Namhun Kim; Haneol Kim; Sung Kwon Kang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-13
  1 in total

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