Literature DB >> 24454087

N,N'-Bis(2-amino-benz-yl)ethane-1,2-diaminium dinitrate.

Luis Ángel Garza Rodríguez1, Perla Elizondo Martínez2, Sylvain Bernès2, Blanca Nájera Martínez2, Nancy Pérez Rodríguez2.   

Abstract

In the title salt, C16H24N4 (2+)·2NO3 (-), both the cation and anion are placed in general positions, although the cation displays non-crystallographic inversion symmetry, with the aliphatic chain extended in an all-trans conformation. The benzene rings are almost parallel, with a dihedral angle between their mean planes of 3.3 (6)°. The nitrate ions are placed in the vicinity of the protonated amine groups, forming efficient N-H⋯O inter-ion hydrogen bonds. Each nitrate ion in the asymmetric unit bridges two symmetry-related cations, forming an R 4 (4)(18) ring, a common motif in organic ammonium nitrate salts. This results in the formation of chains along [010] with alternating cations and anions. The neutral amine groups are involved in slightly weaker N-H⋯O hydrogen bonds with the nitrate O atoms, and there are also a number of C-H⋯O hydrogen bonds present. The resulting supra-molecular structure is based on a two-dimensional network extending in the ab plane.

Entities:  

Year:  2013        PMID: 24454087      PMCID: PMC3884311          DOI: 10.1107/S1600536813027475

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the free neutral amine, see: Rodríguez de Barbarín et al. (2007 ▶). For the p-toluene­sulfonate salt of the title cation, see: Garza Rodríguez et al. (2011 ▶). For related di­ammonium nitrate salts featuring (18) motifs, see: Liu et al. (2007 ▶); Yang et al. (2007 ▶). For supra­molecular motifs nomenclature, see: Etter (1990 ▶). For the synthesis of the title salt, see: Garza Rodríguez (2010 ▶).

Experimental

Crystal data

C16H24N4 2+·2NO3 − M = 396.41 Orthorhombic, a = 11.041 (5) Å b = 5.760 (4) Å c = 30.069 (13) Å V = 1912.1 (18) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.60 × 0.20 × 0.20 mm

Data collection

Siemens P4 diffractometer 4371 measured reflections 2473 independent reflections 1501 reflections with I > 2σ(I) R int = 0.053 3 standard reflections every 97 reflections intensity decay: 1.5%

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.180 S = 1.61 2473 reflections 278 parameters 13 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.31 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL2013. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813027475/rk2415sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813027475/rk2415Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813027475/rk2415Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H24N42+·2NO3Dx = 1.377 Mg m3
Mr = 396.41Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, Pna21Cell parameters from 75 reflections
a = 11.041 (5) Åθ = 4.9–11.7°
b = 5.760 (4) ŵ = 0.11 mm1
c = 30.069 (13) ÅT = 298 K
V = 1912.1 (18) Å3Needle, colourless
Z = 40.60 × 0.20 × 0.20 mm
F(000) = 840
Siemens P4 diffractometerRint = 0.053
Radiation source: fine-focus sealed tube, FN4θmax = 25.5°, θmin = 2.7°
Graphite monochromatorh = −13→13
2θ/ω–scansk = −3→6
4371 measured reflectionsl = −36→36
2473 independent reflections3 standard reflections every 97 reflections
1501 reflections with I > 2σ(I) intensity decay: 1.5%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.180w = 1/[σ2(Fo2) + (0.06P)2] where P = (Fo2 + 2Fc2)/3
S = 1.61(Δ/σ)max < 0.001
2473 reflectionsΔρmax = 0.34 e Å3
278 parametersΔρmin = −0.31 e Å3
13 restraintsExtinction correction: SHELXL2013 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 constraintsExtinction coefficient: 0.010 (2)
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
N10.9978 (7)1.1615 (13)0.1913 (3)0.083 (2)
H1A1.023 (9)1.261 (14)0.171 (2)0.124*
H1B1.038 (8)1.148 (19)0.2170 (18)0.124*
C20.9002 (7)1.0332 (13)0.1770 (3)0.0616 (19)
C30.8321 (9)1.1154 (15)0.1408 (3)0.077 (2)
H3A0.85411.25430.12720.092*
C40.7348 (9)0.9958 (16)0.1251 (3)0.087 (3)
H4A0.69021.05420.10140.104*
C50.7024 (8)0.7886 (18)0.1444 (3)0.080 (2)
H5A0.63640.70490.13390.096*
C60.7699 (7)0.7072 (16)0.1797 (2)0.067 (2)
H6A0.74850.56670.19280.080*
C70.8672 (7)0.8267 (13)0.1961 (2)0.0564 (18)
C80.9347 (6)0.7329 (14)0.2354 (2)0.0545 (18)
H8A0.94380.56620.23220.065*
H8B1.01500.80100.23630.065*
N90.8705 (4)0.7843 (10)0.27754 (19)0.0485 (13)
H9A0.846 (6)0.937 (5)0.284 (3)0.073*
H9B0.795 (4)0.706 (10)0.276 (3)0.073*
C100.9427 (5)0.7325 (13)0.3181 (2)0.0492 (15)
H10A1.01240.83460.31950.059*
H10B0.97150.57340.31710.059*
C110.8645 (5)0.7674 (13)0.3583 (2)0.0474 (14)
H11A0.83720.92740.35970.057*
H11B0.79370.66790.35660.057*
N120.9349 (4)0.7109 (11)0.39831 (19)0.0489 (13)
H12A0.960 (5)0.559 (5)0.398 (3)0.073*
H12B0.999 (4)0.810 (9)0.397 (3)0.073*
C130.8723 (7)0.7589 (13)0.4415 (2)0.0559 (18)
H13A0.79050.69760.44060.067*
H13B0.86740.92520.44630.067*
C140.9406 (7)0.6483 (14)0.4791 (2)0.056 (2)
C151.0413 (8)0.7526 (16)0.4955 (2)0.073 (2)
H15A1.06520.89410.48350.087*
C161.1096 (9)0.658 (2)0.5293 (3)0.093 (3)
H16A1.17980.73000.53920.112*
C171.0704 (10)0.451 (2)0.5479 (3)0.094 (3)
H17A1.11370.38440.57110.113*
C180.9691 (9)0.3471 (17)0.5323 (3)0.085 (3)
H18A0.94390.20830.54510.102*
C190.9016 (7)0.4411 (14)0.4977 (3)0.066 (2)
N200.7978 (8)0.3323 (14)0.4831 (3)0.086 (2)
H20A0.786 (10)0.185 (8)0.493 (3)0.128*
H20B0.764 (9)0.363 (17)0.4563 (19)0.128*
N210.7142 (5)0.2743 (11)0.2797 (2)0.0550 (14)
O220.6509 (5)0.1048 (10)0.2738 (2)0.093 (2)
O230.8219 (4)0.2579 (8)0.28670 (19)0.0729 (15)
O240.6674 (4)0.4708 (9)0.27685 (19)0.0735 (15)
N251.0910 (5)0.2211 (10)0.3951 (2)0.0556 (14)
O261.1542 (5)0.3900 (10)0.3991 (3)0.099 (2)
O270.9825 (4)0.2383 (9)0.38897 (19)0.0702 (16)
O281.1372 (5)0.0215 (9)0.3989 (2)0.0750 (14)
U11U22U33U12U13U23
N10.097 (5)0.055 (5)0.095 (5)−0.021 (4)−0.007 (4)0.007 (4)
C20.077 (5)0.041 (4)0.066 (4)−0.003 (4)0.006 (4)0.001 (4)
C30.110 (7)0.055 (5)0.066 (4)−0.006 (5)−0.004 (5)0.010 (4)
C40.104 (7)0.085 (7)0.071 (5)−0.002 (7)−0.015 (5)0.011 (5)
C50.074 (5)0.100 (7)0.067 (4)−0.016 (5)−0.012 (4)−0.002 (5)
C60.063 (4)0.069 (6)0.068 (5)−0.007 (4)−0.006 (4)0.000 (4)
C70.061 (4)0.051 (5)0.057 (4)0.001 (4)0.005 (3)0.006 (4)
C80.060 (4)0.047 (4)0.057 (4)0.003 (4)0.009 (3)0.002 (4)
N90.051 (3)0.036 (3)0.058 (3)0.005 (3)−0.006 (3)−0.002 (3)
C100.048 (4)0.039 (4)0.061 (4)0.000 (3)−0.003 (3)0.002 (4)
C110.048 (3)0.040 (4)0.054 (3)0.003 (3)−0.005 (3)0.003 (4)
N120.053 (3)0.037 (3)0.056 (3)0.006 (3)0.003 (3)0.003 (3)
C130.064 (4)0.042 (4)0.062 (4)0.001 (4)0.005 (3)0.008 (4)
C140.066 (5)0.047 (5)0.054 (4)0.000 (4)0.001 (3)−0.004 (4)
C150.080 (5)0.079 (6)0.059 (4)−0.002 (5)−0.005 (4)−0.007 (5)
C160.089 (6)0.119 (9)0.071 (5)−0.003 (6)−0.009 (5)−0.016 (6)
C170.102 (7)0.120 (9)0.060 (5)0.040 (7)−0.005 (5)−0.006 (6)
C180.114 (7)0.077 (7)0.062 (5)0.026 (6)0.015 (5)0.014 (5)
C190.082 (5)0.050 (5)0.065 (4)0.010 (4)0.012 (4)−0.002 (4)
N200.096 (6)0.057 (5)0.103 (5)−0.015 (5)0.002 (5)0.009 (4)
N210.050 (3)0.041 (4)0.074 (3)0.005 (3)0.001 (3)0.005 (4)
O220.077 (4)0.049 (3)0.151 (6)−0.016 (3)−0.005 (4)−0.003 (4)
O230.051 (3)0.043 (3)0.125 (4)0.000 (3)−0.014 (3)−0.004 (4)
O240.063 (3)0.047 (3)0.111 (4)0.015 (3)0.002 (3)0.004 (3)
N250.054 (3)0.037 (4)0.075 (3)0.005 (3)0.003 (3)0.001 (4)
O260.074 (4)0.050 (4)0.174 (6)−0.023 (3)−0.001 (4)0.005 (5)
O270.055 (3)0.039 (3)0.116 (4)0.004 (3)−0.013 (3)0.008 (4)
O280.067 (3)0.045 (3)0.113 (4)0.014 (3)0.001 (3)0.005 (3)
N1—C21.376 (10)N12—C131.498 (9)
N1—H1A0.89 (2)N12—H12A0.92 (2)
N1—H1B0.90 (2)N12—H12B0.91 (2)
C2—C71.371 (9)C13—C141.500 (10)
C2—C31.405 (11)C13—H13A0.9700
C3—C41.360 (12)C13—H13B0.9700
C3—H3A0.9300C14—C151.356 (11)
C4—C51.374 (12)C14—C191.386 (11)
C4—H4A0.9300C15—C161.378 (12)
C5—C61.379 (11)C15—H15A0.9300
C5—H5A0.9300C16—C171.382 (15)
C6—C71.368 (10)C16—H16A0.9300
C6—H6A0.9300C17—C181.354 (12)
C7—C81.497 (10)C17—H17A0.9300
C8—N91.482 (8)C18—C191.389 (12)
C8—H8A0.9700C18—H18A0.9300
C8—H8B0.9700C19—N201.378 (11)
N9—C101.486 (8)N20—H20A0.91 (2)
N9—H9A0.94 (2)N20—H20B0.91 (2)
N9—H9B0.95 (2)N21—O231.212 (6)
C10—C111.501 (8)N21—O221.213 (7)
C10—H10A0.9700N21—O241.247 (7)
C10—H10B0.9700N25—O261.203 (7)
C11—N121.468 (9)N25—O271.215 (7)
C11—H11A0.9700N25—O281.263 (7)
C11—H11B0.9700
C2—N1—H1A112 (6)N12—C11—H11B109.9
C2—N1—H1B128 (6)C10—C11—H11B109.9
H1A—N1—H1B120 (5)H11A—C11—H11B108.3
C7—C2—N1122.8 (7)C11—N12—C13115.1 (5)
C7—C2—C3118.4 (7)C11—N12—H12A112 (5)
N1—C2—C3118.8 (8)C13—N12—H12A109 (5)
C4—C3—C2121.3 (8)C11—N12—H12B104 (5)
C4—C3—H3A119.3C13—N12—H12B106 (5)
C2—C3—H3A119.3H12A—N12—H12B111 (4)
C3—C4—C5120.0 (8)N12—C13—C14110.1 (6)
C3—C4—H4A120.0N12—C13—H13A109.6
C5—C4—H4A120.0C14—C13—H13A109.6
C4—C5—C6118.7 (9)N12—C13—H13B109.6
C4—C5—H5A120.7C14—C13—H13B109.6
C6—C5—H5A120.7H13A—C13—H13B108.2
C7—C6—C5122.0 (9)C15—C14—C19119.3 (8)
C7—C6—H6A119.0C15—C14—C13119.9 (7)
C5—C6—H6A119.0C19—C14—C13120.8 (7)
C6—C7—C2119.6 (7)C14—C15—C16122.7 (9)
C6—C7—C8119.6 (7)C14—C15—H15A118.6
C2—C7—C8120.8 (7)C16—C15—H15A118.6
N9—C8—C7111.4 (5)C15—C16—C17117.9 (10)
N9—C8—H8A109.3C15—C16—H16A121.1
C7—C8—H8A109.3C17—C16—H16A121.1
N9—C8—H8B109.3C18—C17—C16120.0 (9)
C7—C8—H8B109.3C18—C17—H17A120.0
H8A—C8—H8B108.0C16—C17—H17A120.0
C8—N9—C10113.9 (5)C17—C18—C19121.9 (9)
C8—N9—H9A120 (5)C17—C18—H18A119.0
C10—N9—H9A100 (5)C19—C18—H18A119.0
C8—N9—H9B107 (5)N20—C19—C14121.5 (8)
C10—N9—H9B114 (5)N20—C19—C18120.4 (9)
H9A—N9—H9B102 (4)C14—C19—C18118.1 (8)
N9—C10—C11109.0 (4)C19—N20—H20A116 (6)
N9—C10—H10A109.9C19—N20—H20B122 (6)
C11—C10—H10A109.9H20A—N20—H20B115 (5)
N9—C10—H10B109.9O23—N21—O22121.8 (6)
C11—C10—H10B109.9O23—N21—O24119.3 (6)
H10A—C10—H10B108.3O22—N21—O24118.8 (6)
N12—C11—C10109.0 (4)O26—N25—O27121.4 (6)
N12—C11—H11A109.9O26—N25—O28119.5 (6)
C10—C11—H11A109.9O27—N25—O28119.1 (6)
C7—C2—C3—C40.8 (12)C10—C11—N12—C13174.5 (5)
N1—C2—C3—C4179.9 (9)C11—N12—C13—C14167.8 (7)
C2—C3—C4—C5−1.0 (14)N12—C13—C14—C1579.3 (9)
C3—C4—C5—C60.4 (14)N12—C13—C14—C19−101.3 (7)
C4—C5—C6—C70.2 (13)C19—C14—C15—C162.1 (12)
C5—C6—C7—C2−0.4 (12)C13—C14—C15—C16−178.5 (7)
C5—C6—C7—C8178.2 (7)C14—C15—C16—C17−2.2 (13)
N1—C2—C7—C6−179.2 (7)C15—C16—C17—C181.2 (13)
C3—C2—C7—C6−0.1 (11)C16—C17—C18—C190.0 (13)
N1—C2—C7—C82.2 (11)C15—C14—C19—N20177.9 (8)
C3—C2—C7—C8−178.7 (7)C13—C14—C19—N20−1.6 (11)
C6—C7—C8—N9−79.6 (9)C15—C14—C19—C18−0.8 (11)
C2—C7—C8—N999.1 (7)C13—C14—C19—C18179.8 (7)
C7—C8—N9—C10−169.9 (6)C17—C18—C19—N20−178.9 (8)
C8—N9—C10—C11−174.2 (6)C17—C18—C19—C14−0.2 (12)
N9—C10—C11—N12178.7 (7)
D—H···AD—HH···AD···AD—H···A
N9—H9A···O23i0.94 (4)1.87 (3)2.794 (8)167 (7)
N9—H9B···O240.95 (5)1.96 (5)2.879 (7)164 (5)
N12—H12A···O270.92 (3)1.88 (3)2.787 (8)168 (8)
N12—H12B···O28i0.91 (5)1.95 (5)2.862 (8)176 (9)
N1—H1B···O22ii0.90 (7)2.55 (8)3.290 (11)141 (9)
N1—H1B···O24ii0.90 (7)2.40 (7)3.272 (10)166 (9)
N9—H9A···O22i0.94 (4)2.38 (6)3.050 (8)128 (5)
N12—H12A···O260.92 (3)2.36 (5)3.046 (8)132 (4)
N12—H12B···O27i0.91 (5)2.49 (5)3.096 (8)125 (4)
N20—H20B···O26iii0.91 (7)2.56 (8)3.246 (12)133 (8)
N20—H20B···O28iii0.91 (7)2.32 (8)3.204 (11)165 (8)
C8—H8B···O24ii0.972.463.327 (9)149
C10—H10A···O24ii0.972.413.258 (8)145
C10—H10B···O22iv0.972.583.291 (9)130
C11—H11A···O27i0.972.563.147 (9)119
C11—H11A···O26v0.972.573.285 (9)131
C11—H11B···O28iii0.972.413.249 (9)145
C13—H13A···O28iii0.972.463.315 (10)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N9—H9A⋯O23i 0.94 (4)1.87 (3)2.794 (8)167 (7)
N9—H9B⋯O240.95 (5)1.96 (5)2.879 (7)164 (5)
N12—H12A⋯O270.92 (3)1.88 (3)2.787 (8)168 (8)
N12—H12B⋯O28i 0.91 (5)1.95 (5)2.862 (8)176 (9)
N1—H1B⋯O22ii 0.90 (7)2.55 (8)3.290 (11)141 (9)
N1—H1B⋯O24ii 0.90 (7)2.40 (7)3.272 (10)166 (9)
N9—H9A⋯O22i 0.94 (4)2.38 (6)3.050 (8)128 (5)
N12—H12A⋯O260.92 (3)2.36 (5)3.046 (8)132 (4)
N12—H12B⋯O27i 0.91 (5)2.49 (5)3.096 (8)125 (4)
N20—H20B⋯O26iii 0.91 (7)2.56 (8)3.246 (12)133 (8)
N20—H20B⋯O28iii 0.91 (7)2.32 (8)3.204 (11)165 (8)
C8—H8B⋯O24ii 0.972.463.327 (9)149
C10—H10A⋯O24ii 0.972.413.258 (8)145
C10—H10B⋯O22iv 0.972.583.291 (9)130
C11—H11A⋯O27i 0.972.563.147 (9)119
C11—H11A⋯O26v 0.972.573.285 (9)131
C11—H11B⋯O28iii 0.972.413.249 (9)145
C13—H13A⋯O28iii 0.972.463.315 (10)147

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N,N'-Bis(2-amino-benz-yl)ethane-1,2-diaminium bis-(4-methyl-benzene-sulfonate).

Authors:  Luis Ángel Garza Rodríguez; Sylvain Bernès; Perla Elizondo Martínez; Blanca Nájera Martínez; Sara L Rodríguez de Luna
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-09
  2 in total
  1 in total

1.  2-Methyl-benzene-1,3-di-ammonium dinitrate.

Authors:  Dhouha Ben Hassen; Walid Rekik; Houcine Naïli; Tadeusz Lis; Roman Grobelny
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-25
  1 in total

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