Literature DB >> 24454026

Di-chlorido-{2-[(E)-phen-yl(pyridin-2-yl-κN)methyl-idene]-N-phenyl-hydra-zine-carboxamide-κ(2) N (2),O}copper(II).

N Aiswarya1, M Sithambaresan2, M R Prathapachandra Kurup1, Seik Weng Ng3.   

Abstract

The title compound, [CuCl2(C19H16N4O)], contains a Cu(II) atom N,N',O-chelated by a neutral N-phenyl-hy-dra-zine-car-box-amide ligand and additionally coordinated by two Cl atoms, resulting in a distorted square-pyramidal geometry. The ligating atoms in the basal square plane of the complex comprise the azomethine N, the pyridine N, the amide O and one of the Cl atoms, whereas the other Cl atom occupies an apical position. The apical Cl atoms in adjacent layers function as hydrogen-bond acceptors to both NH groups. Intermolecular C-H⋯Cl and C-H⋯O interactions are also observed.

Entities:  

Year:  2013        PMID: 24454026      PMCID: PMC3884250          DOI: 10.1107/S1600536813026883

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological applications of hydrazinecarboxamide and its derivatives, see: Beraldo & Gambino (2004 ▶); Kasuga et al. (2006 ▶); Rivadeneira et al. (2009 ▶); Shalini et al. (2009 ▶); Rodriguez-Arguelles et al. (2010 ▶). For the synthesis of related compounds, see: Kurup et al. (2011 ▶). For related structures, see: Kunnath et al. (2012 ▶). For the calculation of the trigonality index, see: Addison et al. (1984 ▶). For the graph-set notation, see: Etter et al. (1990 ▶).

Experimental

Crystal data

[CuCl2(C19H16N4O)] M = 450.81 Triclinic, a = 9.4483 (5) Å b = 9.8197 (3) Å c = 11.5307 (4) Å α = 104.067 (1)° β = 103.026 (1)° γ = 100.475 (1)° V = 978.83 (7) Å3 Z = 2 Mo Kα radiation μ = 1.41 mm−1 T = 293 K 0.35 × 0.32 × 0.30 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.614, T max = 0.649 7149 measured reflections 4411 independent reflections 3550 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.092 S = 1.01 4411 reflections 252 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.40 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2/SAINT (Bruker, 2004 ▶); data reduction: SAINT/XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXL97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813026883/fj2644sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813026883/fj2644Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CuCl2(C19H16N4O)]Z = 2
Mr = 450.81F(000) = 458
Triclinic, P1Dx = 1.530 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.4483 (5) ÅCell parameters from 3151 reflections
b = 9.8197 (3) Åθ = 2.5–27.7°
c = 11.5307 (4) ŵ = 1.41 mm1
α = 104.067 (1)°T = 293 K
β = 103.026 (1)°Block, green
γ = 100.475 (1)°0.35 × 0.32 × 0.30 mm
V = 978.83 (7) Å3
Bruker Kappa APEXII CCD diffractometer4411 independent reflections
Radiation source: fine-focus sealed tube3550 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
Detector resolution: 8.33 pixels mm-1θmax = 27.5°, θmin = 3.3°
ω and φ scanh = −9→12
Absorption correction: multi-scan (SADABS; Bruker, 2004)k = −12→12
Tmin = 0.614, Tmax = 0.649l = −14→14
7149 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0429P)2 + 0.3399P] where P = (Fo2 + 2Fc2)/3
4411 reflections(Δ/σ)max = 0.001
252 parametersΔρmax = 0.34 e Å3
2 restraintsΔρmin = −0.40 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.56784 (3)0.81865 (3)0.45210 (3)0.04217 (10)
Cl10.68970 (7)0.63456 (5)0.34892 (5)0.04308 (14)
Cl20.54712 (10)0.95006 (8)0.32265 (7)0.0657 (2)
O10.35179 (18)0.68219 (17)0.38879 (14)0.0435 (4)
N10.7528 (2)0.9491 (2)0.5849 (2)0.0474 (5)
N20.5556 (2)0.74344 (17)0.59382 (16)0.0343 (4)
N30.4287 (2)0.64128 (19)0.57491 (17)0.0385 (4)
H3'0.418 (3)0.593 (2)0.625 (2)0.048 (7)*
N40.2064 (2)0.5040 (2)0.43869 (19)0.0459 (5)
C10.8558 (4)1.0534 (3)0.5712 (3)0.0691 (9)
H10.84191.07330.49520.083*
C20.9811 (4)1.1309 (4)0.6673 (5)0.0930 (12)
H21.05141.20260.65630.112*
C31.0019 (4)1.1029 (4)0.7775 (4)0.0938 (12)
H31.08651.15550.84310.113*
C40.8967 (3)0.9953 (3)0.7934 (3)0.0712 (8)
H40.90980.97430.86900.085*
C50.7732 (3)0.9209 (2)0.6946 (2)0.0450 (5)
C60.6523 (2)0.8054 (2)0.7004 (2)0.0358 (4)
C70.6428 (2)0.7762 (2)0.81791 (19)0.0381 (5)
C80.6340 (3)0.8871 (3)0.9153 (2)0.0500 (6)
H80.63750.97930.90660.060*
C90.6203 (3)0.8607 (3)1.0242 (2)0.0596 (7)
H90.61280.93481.08840.071*
C100.6176 (3)0.7256 (3)1.0393 (2)0.0587 (7)
H100.60900.70881.11370.070*
C110.6275 (3)0.6155 (3)0.9440 (2)0.0564 (7)
H110.62630.52440.95440.068*
C120.6394 (3)0.6395 (3)0.8329 (2)0.0458 (5)
H120.64500.56440.76840.055*
C130.3276 (2)0.6125 (2)0.46062 (19)0.0364 (5)
C140.0774 (3)0.4486 (3)0.3355 (2)0.0467 (5)
C15−0.0277 (3)0.3329 (3)0.3403 (3)0.0649 (8)
H15−0.00970.29660.40810.078*
C16−0.1589 (4)0.2715 (4)0.2447 (4)0.0832 (10)
H16−0.22970.19490.24880.100*
C17−0.1846 (4)0.3227 (5)0.1446 (4)0.0988 (13)
H17−0.27190.27960.07930.119*
C18−0.0819 (4)0.4383 (5)0.1398 (4)0.0940 (12)
H18−0.10110.47430.07190.113*
C190.0509 (3)0.5020 (3)0.2357 (3)0.0664 (8)
H190.12060.57980.23190.080*
H4'0.210 (3)0.465 (3)0.496 (2)0.050 (8)*
U11U22U33U12U13U23
Cu10.05420 (19)0.03721 (16)0.04289 (17)0.00880 (12)0.02232 (13)0.01988 (12)
Cl10.0519 (3)0.0338 (3)0.0490 (3)0.0081 (2)0.0230 (3)0.0161 (2)
Cl20.0992 (6)0.0637 (4)0.0735 (4)0.0432 (4)0.0528 (4)0.0476 (4)
O10.0447 (9)0.0477 (9)0.0384 (8)0.0059 (7)0.0103 (7)0.0190 (7)
N10.0500 (12)0.0343 (9)0.0629 (13)0.0037 (9)0.0314 (10)0.0142 (9)
N20.0371 (10)0.0284 (8)0.0358 (9)0.0010 (7)0.0125 (8)0.0099 (7)
N30.0438 (11)0.0336 (9)0.0337 (9)−0.0034 (8)0.0093 (8)0.0135 (7)
N40.0431 (11)0.0439 (11)0.0445 (11)−0.0019 (9)0.0069 (9)0.0167 (9)
C10.069 (2)0.0500 (15)0.102 (2)0.0047 (14)0.0523 (19)0.0291 (15)
C20.057 (2)0.063 (2)0.156 (4)−0.0107 (16)0.044 (2)0.033 (2)
C30.0433 (18)0.080 (2)0.129 (3)−0.0197 (16)0.004 (2)0.024 (2)
C40.0431 (16)0.0650 (18)0.087 (2)−0.0045 (13)0.0021 (15)0.0175 (16)
C50.0352 (12)0.0374 (11)0.0601 (15)0.0044 (9)0.0168 (11)0.0107 (10)
C60.0362 (11)0.0304 (10)0.0405 (11)0.0067 (8)0.0133 (9)0.0089 (8)
C70.0337 (11)0.0398 (11)0.0348 (11)0.0055 (9)0.0043 (9)0.0081 (9)
C80.0583 (16)0.0470 (13)0.0391 (12)0.0146 (12)0.0068 (11)0.0080 (10)
C90.0671 (19)0.0687 (18)0.0319 (12)0.0138 (14)0.0067 (12)0.0041 (11)
C100.0535 (16)0.081 (2)0.0347 (12)0.0047 (14)0.0041 (11)0.0220 (13)
C110.0546 (16)0.0560 (15)0.0559 (15)0.0024 (12)0.0057 (12)0.0291 (13)
C120.0495 (14)0.0413 (12)0.0434 (12)0.0069 (10)0.0105 (11)0.0124 (10)
C130.0398 (12)0.0319 (10)0.0367 (11)0.0070 (9)0.0122 (9)0.0089 (8)
C140.0369 (13)0.0430 (12)0.0529 (14)0.0084 (10)0.0097 (11)0.0049 (10)
C150.0482 (16)0.0527 (15)0.080 (2)−0.0010 (13)0.0132 (14)0.0086 (14)
C160.0487 (18)0.070 (2)0.099 (3)−0.0065 (15)0.0032 (18)−0.0016 (19)
C170.051 (2)0.099 (3)0.099 (3)0.0014 (19)−0.0168 (19)−0.008 (2)
C180.072 (2)0.114 (3)0.077 (2)0.022 (2)−0.0126 (19)0.026 (2)
C190.0487 (16)0.0738 (19)0.0654 (18)0.0083 (14)−0.0001 (13)0.0205 (15)
Cu1—N21.9672 (16)C6—C71.470 (3)
Cu1—N12.016 (2)C7—C121.390 (3)
Cu1—O12.0865 (16)C7—C81.391 (3)
Cu1—Cl22.1973 (6)C8—C91.370 (4)
Cu1—Cl12.5175 (6)C8—H80.9300
O1—C131.229 (3)C9—C101.376 (4)
N1—C51.339 (3)C9—H90.9300
N1—C11.344 (3)C10—C111.375 (4)
N2—C61.282 (3)C10—H100.9300
N2—N31.352 (2)C11—C121.383 (3)
N3—C131.372 (3)C11—H110.9300
N3—H3'0.846 (16)C12—H120.9300
N4—C131.343 (3)C14—C191.369 (4)
N4—C141.410 (3)C14—C151.388 (4)
N4—H4'0.833 (16)C15—C161.380 (4)
C1—C21.371 (5)C15—H150.9300
C1—H10.9300C16—C171.358 (5)
C2—C31.344 (6)C16—H160.9300
C2—H20.9300C17—C181.374 (6)
C3—C41.389 (4)C17—H170.9300
C3—H30.9300C18—C191.393 (4)
C4—C51.371 (4)C18—H180.9300
C4—H40.9300C19—H190.9300
C5—C61.483 (3)
N2—Cu1—N178.70 (7)C7—C6—C5122.45 (19)
N2—Cu1—O177.84 (6)C12—C7—C8119.4 (2)
N1—Cu1—O1154.03 (7)C12—C7—C6121.4 (2)
N2—Cu1—Cl2162.21 (6)C8—C7—C6119.2 (2)
N1—Cu1—Cl299.08 (6)C9—C8—C7120.0 (2)
O1—Cu1—Cl299.86 (5)C9—C8—H8120.0
N2—Cu1—Cl196.69 (5)C7—C8—H8120.0
N1—Cu1—Cl197.98 (6)C8—C9—C10120.7 (2)
O1—Cu1—Cl195.64 (5)C8—C9—H9119.6
Cl2—Cu1—Cl1101.09 (2)C10—C9—H9119.6
C13—O1—Cu1112.00 (14)C11—C10—C9119.7 (2)
C5—N1—C1119.2 (3)C11—C10—H10120.1
C5—N1—Cu1114.21 (15)C9—C10—H10120.1
C1—N1—Cu1126.5 (2)C10—C11—C12120.5 (2)
C6—N2—N3123.84 (17)C10—C11—H11119.8
C6—N2—Cu1120.05 (14)C12—C11—H11119.8
N3—N2—Cu1115.29 (13)C11—C12—C7119.7 (2)
N2—N3—C13113.53 (17)C11—C12—H12120.1
N2—N3—H3'122.5 (18)C7—C12—H12120.1
C13—N3—H3'123.5 (18)O1—C13—N4125.9 (2)
C13—N4—C14129.7 (2)O1—C13—N3120.75 (19)
C13—N4—H4'113.5 (19)N4—C13—N3113.39 (19)
C14—N4—H4'116.8 (19)C19—C14—C15119.9 (3)
N1—C1—C2121.2 (3)C19—C14—N4124.6 (2)
N1—C1—H1119.4C15—C14—N4115.5 (2)
C2—C1—H1119.4C16—C15—C14120.2 (3)
C3—C2—C1119.8 (3)C16—C15—H15119.9
C3—C2—H2120.1C14—C15—H15119.9
C1—C2—H2120.1C17—C16—C15120.1 (3)
C2—C3—C4119.9 (3)C17—C16—H16120.0
C2—C3—H3120.1C15—C16—H16120.0
C4—C3—H3120.1C16—C17—C18120.1 (3)
C5—C4—C3118.2 (3)C16—C17—H17120.0
C5—C4—H4120.9C18—C17—H17120.0
C3—C4—H4120.9C17—C18—C19120.6 (4)
N1—C5—C4121.8 (2)C17—C18—H18119.7
N1—C5—C6114.9 (2)C19—C18—H18119.7
C4—C5—C6123.3 (2)C14—C19—C18119.1 (3)
N2—C6—C7125.61 (19)C14—C19—H19120.4
N2—C6—C5111.80 (19)C18—C19—H19120.4
N2—Cu1—O1—C13−6.89 (15)N3—N2—C6—C5−175.36 (19)
N1—Cu1—O1—C13−32.7 (3)Cu1—N2—C6—C5−6.2 (2)
Cl2—Cu1—O1—C13−168.91 (14)N1—C5—C6—N26.1 (3)
Cl1—Cu1—O1—C1388.77 (15)C4—C5—C6—N2−174.4 (2)
N2—Cu1—N1—C50.20 (16)N1—C5—C6—C7−169.7 (2)
O1—Cu1—N1—C525.9 (3)C4—C5—C6—C79.7 (4)
Cl2—Cu1—N1—C5162.26 (16)N2—C6—C7—C1261.0 (3)
Cl1—Cu1—N1—C5−95.08 (16)C5—C6—C7—C12−123.7 (2)
N2—Cu1—N1—C1177.3 (2)N2—C6—C7—C8−117.7 (3)
O1—Cu1—N1—C1−157.0 (2)C5—C6—C7—C857.6 (3)
Cl2—Cu1—N1—C1−20.6 (2)C12—C7—C8—C9−0.8 (4)
Cl1—Cu1—N1—C182.0 (2)C6—C7—C8—C9177.9 (2)
N1—Cu1—N2—C63.66 (16)C7—C8—C9—C101.1 (4)
O1—Cu1—N2—C6−165.14 (18)C8—C9—C10—C11−0.5 (4)
Cl2—Cu1—N2—C6−80.8 (3)C9—C10—C11—C12−0.4 (4)
Cl1—Cu1—N2—C6100.51 (16)C10—C11—C12—C70.7 (4)
N1—Cu1—N2—N3173.68 (16)C8—C7—C12—C11−0.1 (4)
O1—Cu1—N2—N34.88 (14)C6—C7—C12—C11−178.8 (2)
Cl2—Cu1—N2—N389.2 (2)Cu1—O1—C13—N4−171.66 (19)
Cl1—Cu1—N2—N3−89.48 (14)Cu1—O1—C13—N38.0 (3)
C6—N2—N3—C13167.1 (2)C14—N4—C13—O1−3.4 (4)
Cu1—N2—N3—C13−2.5 (2)C14—N4—C13—N3176.9 (2)
C5—N1—C1—C20.1 (4)N2—N3—C13—O1−4.0 (3)
Cu1—N1—C1—C2−176.9 (2)N2—N3—C13—N4175.67 (19)
N1—C1—C2—C3−0.1 (6)C13—N4—C14—C19−1.9 (4)
C1—C2—C3—C40.2 (6)C13—N4—C14—C15178.9 (3)
C2—C3—C4—C5−0.3 (6)C19—C14—C15—C160.0 (5)
C1—N1—C5—C4−0.2 (4)N4—C14—C15—C16179.3 (3)
Cu1—N1—C5—C4177.2 (2)C14—C15—C16—C171.0 (5)
C1—N1—C5—C6179.3 (2)C15—C16—C17—C18−1.7 (6)
Cu1—N1—C5—C6−3.4 (3)C16—C17—C18—C191.4 (7)
C3—C4—C5—N10.3 (5)C15—C14—C19—C18−0.3 (5)
C3—C4—C5—C6−179.1 (3)N4—C14—C19—C18−179.5 (3)
N3—N2—C6—C70.4 (3)C17—C18—C19—C14−0.4 (6)
Cu1—N2—C6—C7169.48 (16)
D—H···AD—HH···AD···AD—H···A
N3—H3′···Cl1i0.85 (2)2.40 (2)3.1397 (18)147 (2)
N4—H4′···Cl1i0.83 (2)2.35 (2)3.136 (2)159 (2)
C2—H2···Cl1ii0.932.693.589 (4)163
C19—H19···O10.932.362.953 (4)121
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3′⋯Cl1i 0.85 (2)2.40 (2)3.1397 (18)147 (2)
N4—H4′⋯Cl1i 0.83 (2)2.35 (2)3.136 (2)159 (2)
C2—H2⋯Cl1ii 0.932.693.589 (4)163
C19—H19⋯O10.932.362.953 (4)121

Symmetry codes: (i) ; (ii) .

  7 in total

Review 1.  The wide pharmacological versatility of semicarbazones, thiosemicarba-zones and their metal complexes.

Authors:  Heloisa Beraldo; Dinorah Gambino
Journal:  Mini Rev Med Chem       Date:  2004-01       Impact factor: 3.862

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  Syntheses, crystal structures and antimicrobial activities of 6-coordinate antimony(III) complexes with tridentate 2-acetylpyridine thiosemicarbazone, bis(thiosemicarbazone) and semicarbazone ligands.

Authors:  Noriko Chikaraishi Kasuga; Kuniaki Onodera; Saori Nakano; Kunihiko Hayashi; Kenji Nomiya
Journal:  J Inorg Biochem       Date:  2006-03-20       Impact factor: 4.155

5.  Cyclization of the semicarbazone template of aryl semicarbazones: synthesis and anticonvulsant activity of 4,5-diphenyl-2H-1,2,4-triazol-3(4H)-one.

Authors:  M Shalini; P Yogeeswari; D Sriram; J P Stables
Journal:  Biomed Pharmacother       Date:  2009-03       Impact factor: 6.529

6.  Biological effects of a complex of vanadium(V) with salicylaldehyde semicarbazone in osteoblasts in culture: mechanism of action.

Authors:  Josefina Rivadeneira; Daniel A Barrio; Gabriel Arrambide; Dinorah Gambino; Liliana Bruzzone; Susana B Etcheverry
Journal:  J Inorg Biochem       Date:  2008-11-28       Impact factor: 4.155

7.  Dichlorido(1-{(E)-[phen-yl(pyridin-2-yl-κN)methyl-idene]amino-κN}pyrrolidin-2-one-κO)copper(II) monohydrate.

Authors:  Roji J Kunnath; M R Prathapachandra Kurup; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-23
  7 in total
  1 in total

1.  Crystal structure of (E)-2-[(2-hy-droxy-4-meth-oxy-phen-yl)(phen-yl)methyl-idene]-N-phenyl-hydrazine-1-carboxamide.

Authors:  C F Annie; M Sithambaresan; M R Prathapachandra Kurup
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-03-28
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.