Literature DB >> 22969476

Dichlorido(1-{(E)-[phen-yl(pyridin-2-yl-κN)methyl-idene]amino-κN}pyrrolidin-2-one-κO)copper(II) monohydrate.

Roji J Kunnath, M R Prathapachandra Kurup, Seik Weng Ng.   

Abstract

The Cu(II) atom in the title compound, [CuCl(2)(C(16)H(15)N(3)O)]·H(2)O, is N,N',O-chelated by the neutral Schiff base ligand and exists in a square-pyramidal geometry. It is displaced by 0.316 (1) Å out of the square plane (r.m.s. deviation = 0.015 Å) in the direction of the apical Cl atom. The apical Cl atoms of adjacent complex units are hydrogen-bond acceptors to two water mol-ecules, the inter-action generating a centrosymmetric dimer through a cyclic R(4) (2)(8) association.

Entities:  

Year:  2012        PMID: 22969476      PMCID: PMC3435603          DOI: 10.1107/S1600536812035398

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a history of Schiff bases, see: Tidwell (2008 ▶). For graph-set notation, see: Etter et al. (1990 ▶).

Experimental

Crystal data

[CuCl2(C16H15N3O)H2O M = 417.77 Triclinic, a = 9.1289 (2) Å b = 9.4017 (2) Å c = 10.6798 (2) Å α = 90.4349 (6)° β = 99.1627 (6)° γ = 105.4911 (6)° V = 870.84 (3) Å3 Z = 2 Mo Kα radiation μ = 1.57 mm−1 T = 293 K 0.30 × 0.30 × 0.30 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.650, T max = 0.650 14839 measured reflections 3987 independent reflections 3761 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.076 S = 1.07 3987 reflections 225 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.45 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812035398/zs2227sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035398/zs2227Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CuCl2(C16H15N3O)]·H2OZ = 2
Mr = 417.77F(000) = 426
Triclinic, P1Dx = 1.593 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.1289 (2) ÅCell parameters from 9988 reflections
b = 9.4017 (2) Åθ = 2.3–28.2°
c = 10.6798 (2) ŵ = 1.57 mm1
α = 90.4349 (6)°T = 293 K
β = 99.1627 (6)°Cube, green
γ = 105.4911 (6)°0.30 × 0.30 × 0.30 mm
V = 870.84 (3) Å3
Bruker Kappa APEXII CCD diffractometer3987 independent reflections
Radiation source: fine-focus sealed tube3761 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
ω scansθmax = 27.5°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.650, Tmax = 0.650k = −12→12
14839 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.076H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0379P)2 + 0.3259P] where P = (Fo2 + 2Fc2)/3
3987 reflections(Δ/σ)max = 0.001
225 parametersΔρmax = 0.45 e Å3
2 restraintsΔρmin = −0.34 e Å3
xyzUiso*/Ueq
Cu10.48709 (2)0.63969 (2)0.845334 (18)0.03229 (8)
Cl10.54227 (8)0.72830 (6)0.64075 (5)0.06303 (16)
Cl20.64240 (5)0.82061 (5)0.97595 (4)0.04703 (12)
O10.62811 (14)0.49646 (15)0.86442 (14)0.0478 (3)
O1W0.2859 (2)0.5064 (3)0.4420 (2)0.0832 (6)
N10.28316 (15)0.68570 (15)0.84571 (13)0.0340 (3)
N20.33922 (15)0.44928 (14)0.77515 (13)0.0308 (3)
N30.40965 (15)0.34475 (15)0.75166 (14)0.0339 (3)
C10.2610 (2)0.81241 (19)0.88367 (18)0.0410 (4)
H1A0.34620.88930.91760.049*
C20.1151 (2)0.8336 (2)0.8743 (2)0.0505 (5)
H2A0.10280.92270.90300.061*
C3−0.0106 (2)0.7216 (2)0.8222 (2)0.0557 (5)
H3−0.10940.73390.81500.067*
C40.0108 (2)0.5900 (2)0.7803 (2)0.0467 (4)
H4−0.07290.51290.74390.056*
C50.15940 (18)0.57554 (17)0.79400 (16)0.0333 (3)
C60.19396 (18)0.43781 (17)0.75440 (15)0.0320 (3)
C70.06742 (18)0.30651 (17)0.70149 (17)0.0342 (3)
C80.0047 (3)0.2941 (2)0.5739 (2)0.0549 (5)
H80.04280.36720.52020.066*
C9−0.1152 (3)0.1720 (3)0.5270 (2)0.0704 (7)
H9−0.15750.16320.44120.085*
C10−0.1720 (2)0.0643 (2)0.6054 (3)0.0614 (6)
H10−0.2518−0.01790.57260.074*
C11−0.1118 (2)0.0772 (2)0.7324 (2)0.0530 (5)
H11−0.15160.00410.78560.064*
C120.0085 (2)0.1990 (2)0.7818 (2)0.0428 (4)
H120.04910.20820.86800.051*
C130.3480 (2)0.19716 (19)0.68807 (18)0.0399 (4)
H13A0.29710.20190.60190.048*
H13B0.27590.13260.73440.048*
C140.4930 (2)0.1453 (2)0.6898 (2)0.0510 (5)
H14A0.47700.04610.71980.061*
H14B0.51820.14440.60490.061*
C150.6226 (2)0.2524 (2)0.7783 (2)0.0509 (5)
H15A0.65000.20640.85630.061*
H15B0.71320.28490.73820.061*
C160.5608 (2)0.3787 (2)0.80431 (18)0.0392 (4)
H10.355 (3)0.564 (3)0.493 (3)0.100 (12)*
H20.330 (4)0.441 (3)0.435 (4)0.114 (15)*
U11U22U33U12U13U23
Cu10.02431 (11)0.02906 (11)0.03759 (12)0.00025 (8)0.00019 (7)−0.00478 (8)
Cl10.0821 (4)0.0500 (3)0.0433 (3)−0.0090 (3)0.0168 (2)0.0018 (2)
Cl20.0366 (2)0.0455 (2)0.0467 (2)−0.00346 (18)−0.00297 (17)−0.01499 (18)
O10.0300 (6)0.0431 (7)0.0650 (9)0.0087 (5)−0.0048 (6)−0.0102 (6)
O1W0.0539 (11)0.1031 (17)0.0784 (13)0.0071 (11)−0.0049 (9)−0.0176 (12)
N10.0284 (6)0.0284 (6)0.0404 (7)0.0027 (5)0.0005 (5)−0.0031 (5)
N20.0270 (6)0.0253 (6)0.0374 (7)0.0043 (5)0.0027 (5)−0.0006 (5)
N30.0292 (6)0.0277 (6)0.0426 (7)0.0055 (5)0.0039 (5)−0.0018 (5)
C10.0379 (9)0.0302 (8)0.0495 (10)0.0047 (7)−0.0003 (7)−0.0060 (7)
C20.0452 (10)0.0355 (9)0.0704 (13)0.0149 (8)0.0020 (9)−0.0109 (9)
C30.0357 (9)0.0442 (10)0.0866 (16)0.0148 (8)0.0026 (10)−0.0097 (10)
C40.0281 (8)0.0363 (9)0.0696 (12)0.0042 (7)−0.0010 (8)−0.0078 (8)
C50.0274 (7)0.0270 (7)0.0409 (8)0.0024 (6)0.0011 (6)−0.0019 (6)
C60.0281 (7)0.0272 (7)0.0357 (8)0.0016 (6)0.0013 (6)−0.0006 (6)
C70.0244 (7)0.0259 (7)0.0487 (9)0.0030 (6)0.0022 (6)−0.0033 (6)
C80.0518 (12)0.0488 (11)0.0482 (11)−0.0085 (9)0.0008 (9)−0.0049 (9)
C90.0602 (14)0.0709 (16)0.0591 (14)−0.0100 (12)−0.0031 (11)−0.0230 (12)
C100.0396 (10)0.0414 (11)0.0903 (17)−0.0088 (8)0.0091 (10)−0.0261 (11)
C110.0368 (9)0.0295 (8)0.0926 (16)0.0040 (7)0.0193 (10)0.0060 (9)
C120.0334 (8)0.0344 (8)0.0578 (11)0.0056 (7)0.0058 (7)0.0058 (7)
C130.0404 (9)0.0314 (8)0.0460 (9)0.0073 (7)0.0060 (7)−0.0074 (7)
C140.0479 (11)0.0396 (10)0.0684 (13)0.0156 (8)0.0119 (9)−0.0043 (9)
C150.0423 (10)0.0509 (11)0.0632 (12)0.0225 (9)0.0033 (9)−0.0043 (9)
C160.0321 (8)0.0392 (9)0.0461 (9)0.0102 (7)0.0048 (7)0.0014 (7)
Cu1—N21.9888 (13)C5—C61.486 (2)
Cu1—N12.0213 (14)C6—C71.482 (2)
Cu1—O12.0878 (13)C7—C81.382 (3)
Cu1—Cl22.2125 (4)C7—C121.384 (2)
Cu1—Cl12.4240 (5)C8—C91.383 (3)
O1—C161.231 (2)C8—H80.9300
O1W—H10.834 (10)C9—C101.366 (4)
O1W—H20.833 (10)C9—H90.9300
N1—C11.331 (2)C10—C111.372 (4)
N1—C51.350 (2)C10—H100.9300
N2—C61.284 (2)C11—C121.389 (3)
N2—N31.3518 (19)C11—H110.9300
N3—C161.355 (2)C12—H120.9300
N3—C131.466 (2)C13—C141.526 (3)
C1—C21.387 (3)C13—H13A0.9700
C1—H1A0.9300C13—H13B0.9700
C2—C31.371 (3)C14—C151.517 (3)
C2—H2A0.9300C14—H14A0.9700
C3—C41.385 (3)C14—H14B0.9700
C3—H30.9300C15—C161.486 (2)
C4—C51.384 (2)C15—H15A0.9700
C4—H40.9300C15—H15B0.9700
N2—Cu1—N178.77 (5)C8—C7—C12120.20 (17)
N2—Cu1—O178.29 (5)C8—C7—C6120.33 (16)
N1—Cu1—O1152.34 (6)C12—C7—C6119.42 (16)
N2—Cu1—Cl2163.34 (4)C7—C8—C9119.4 (2)
N1—Cu1—Cl2100.41 (4)C7—C8—H8120.3
O1—Cu1—Cl297.17 (4)C9—C8—H8120.3
N2—Cu1—Cl195.08 (4)C10—C9—C8120.6 (2)
N1—Cu1—Cl1100.24 (4)C10—C9—H9119.7
O1—Cu1—Cl196.99 (5)C8—C9—H9119.7
Cl2—Cu1—Cl1101.40 (2)C9—C10—C11120.19 (19)
C16—O1—Cu1109.91 (11)C9—C10—H10119.9
H1—O1W—H298 (3)C11—C10—H10119.9
C1—N1—C5118.68 (14)C10—C11—C12120.2 (2)
C1—N1—Cu1127.24 (12)C10—C11—H11119.9
C5—N1—Cu1113.95 (11)C12—C11—H11119.9
C6—N2—N3127.33 (14)C7—C12—C11119.36 (19)
C6—N2—Cu1119.74 (11)C7—C12—H12120.3
N3—N2—Cu1112.90 (10)C11—C12—H12120.3
N2—N3—C16113.89 (13)N3—C13—C14102.37 (15)
N2—N3—C13131.06 (14)N3—C13—H13A111.3
C16—N3—C13114.85 (14)C14—C13—H13A111.3
N1—C1—C2122.22 (16)N3—C13—H13B111.3
N1—C1—H1A118.9C14—C13—H13B111.3
C2—C1—H1A118.9H13A—C13—H13B109.2
C3—C2—C1119.11 (17)C15—C14—C13107.37 (15)
C3—C2—H2A120.4C15—C14—H14A110.2
C1—C2—H2A120.4C13—C14—H14A110.2
C2—C3—C4119.32 (18)C15—C14—H14B110.2
C2—C3—H3120.3C13—C14—H14B110.2
C4—C3—H3120.3H14A—C14—H14B108.5
C5—C4—C3118.56 (17)C16—C15—C14105.17 (15)
C5—C4—H4120.7C16—C15—H15A110.7
C3—C4—H4120.7C14—C15—H15A110.7
N1—C5—C4122.09 (15)C16—C15—H15B110.7
N1—C5—C6115.32 (14)C14—C15—H15B110.7
C4—C5—C6122.59 (15)H15A—C15—H15B108.8
N2—C6—C7127.44 (14)O1—C16—N3122.62 (16)
N2—C6—C5112.02 (13)O1—C16—C15128.59 (17)
C7—C6—C5120.52 (13)N3—C16—C15108.77 (15)
N2—Cu1—O1—C1612.11 (13)C3—C4—C5—C6178.79 (19)
N1—Cu1—O1—C1646.6 (2)N3—N2—C6—C71.0 (3)
Cl2—Cu1—O1—C16175.86 (13)Cu1—N2—C6—C7179.23 (13)
Cl1—Cu1—O1—C16−81.66 (13)N3—N2—C6—C5179.28 (14)
N2—Cu1—N1—C1−179.79 (16)Cu1—N2—C6—C5−2.54 (19)
O1—Cu1—N1—C1145.74 (15)N1—C5—C6—N2−1.0 (2)
Cl2—Cu1—N1—C117.15 (16)C4—C5—C6—N2179.64 (17)
Cl1—Cu1—N1—C1−86.58 (15)N1—C5—C6—C7177.33 (15)
N2—Cu1—N1—C5−3.96 (12)C4—C5—C6—C7−2.0 (3)
O1—Cu1—N1—C5−38.43 (19)N2—C6—C7—C8−97.6 (2)
Cl2—Cu1—N1—C5−167.02 (11)C5—C6—C7—C884.3 (2)
Cl1—Cu1—N1—C589.24 (12)N2—C6—C7—C1284.8 (2)
N1—Cu1—N2—C63.67 (13)C5—C6—C7—C12−93.27 (19)
O1—Cu1—N2—C6168.11 (14)C12—C7—C8—C9−1.3 (3)
Cl2—Cu1—N2—C692.48 (18)C6—C7—C8—C9−178.8 (2)
Cl1—Cu1—N2—C6−95.78 (13)C7—C8—C9—C100.2 (4)
N1—Cu1—N2—N3−177.89 (12)C8—C9—C10—C110.8 (4)
O1—Cu1—N2—N3−13.46 (11)C9—C10—C11—C12−0.7 (3)
Cl2—Cu1—N2—N3−89.09 (17)C8—C7—C12—C111.4 (3)
Cl1—Cu1—N2—N382.65 (11)C6—C7—C12—C11178.96 (16)
C6—N2—N3—C16−168.57 (16)C10—C11—C12—C7−0.4 (3)
Cu1—N2—N3—C1613.14 (17)N2—N3—C13—C14177.20 (17)
C6—N2—N3—C135.9 (3)C16—N3—C13—C14−8.4 (2)
Cu1—N2—N3—C13−172.38 (14)N3—C13—C14—C1511.8 (2)
C5—N1—C1—C21.4 (3)C13—C14—C15—C16−11.4 (2)
Cu1—N1—C1—C2177.05 (15)Cu1—O1—C16—N3−9.2 (2)
N1—C1—C2—C3−1.2 (3)Cu1—O1—C16—C15172.06 (17)
C1—C2—C3—C40.1 (4)N2—N3—C16—O1−2.2 (3)
C2—C3—C4—C50.7 (3)C13—N3—C16—O1−177.64 (17)
C1—N1—C5—C4−0.5 (3)N2—N3—C16—C15176.76 (15)
Cu1—N1—C5—C4−176.76 (15)C13—N3—C16—C151.4 (2)
C1—N1—C5—C6−179.87 (15)C14—C15—C16—O1−174.7 (2)
Cu1—N1—C5—C63.92 (18)C14—C15—C16—N36.4 (2)
C3—C4—C5—N1−0.5 (3)
D—H···AD—HH···AD···AD—H···A
O1w—H1···Cl10.83 (1)2.34 (1)3.175 (2)178 (4)
O1w—H2···Cl1i0.83 (1)2.41 (2)3.221 (3)165 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1w—H1⋯Cl10.83 (1)2.34 (1)3.175 (2)178 (4)
O1w—H2⋯Cl1i 0.83 (1)2.41 (2)3.221 (3)165 (4)

Symmetry code: (i) .

  3 in total

1.  Hugo (Ugo) Schiff, Schiff bases, and a century of beta-lactam synthesis.

Authors:  Thomas T Tidwell
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01
  3 in total
  2 in total

1.  Di-chlorido-{2-[(E)-phen-yl(pyridin-2-yl-κN)methyl-idene]-N-phenyl-hydra-zine-carboxamide-κ(2) N (2),O}copper(II).

Authors:  N Aiswarya; M Sithambaresan; M R Prathapachandra Kurup; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-09

2.  (1-{(E)-[Phen-yl(pyridin-2-yl-κN)methyl-idene]amino-κN}pyrrolidin-2-one-κO)bis-(thio-cyanato-κN)copper(II).

Authors:  Roji J Kunnath; M R Prathapachandra Kurup; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-26
  2 in total

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