Literature DB >> 24443078

A chemical tool for in vitro and in vivo precipitation of lysine methyltransferase G9a.

Kyle D Konze1, Samantha G Pattenden, Feng Liu, Dalia Barsyte-Lovejoy, Fengling Li, Jeremy M Simon, Ian J Davis, Masoud Vedadi, Jian Jin.   

Abstract

Here we report the design, synthesis, and biochemical characterization of a new chemical tool, UNC0965. UNC0965 is a biotinylated version of our previously reported G9a chemical probe, UNC0638. Importantly, UNC0965 maintains high in vitro potency and is cell penetrant. The biotinylated tag of UNC0965 enables "chemiprecipitation" of G9a from whole cell lysates. Further, the cell penetrance of UNC0965 allowed us to explore the localization of G9a on chromatin both in vitro and in vivo through chemical inhibitor-based chromatin immunoprecipitation (chem-ChIP).
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  G9a; chromatin; enzymes; lysine methyltransferase; medicinal chemistry

Mesh:

Substances:

Year:  2014        PMID: 24443078      PMCID: PMC4005005          DOI: 10.1002/cmdc.201300450

Source DB:  PubMed          Journal:  ChemMedChem        ISSN: 1860-7179            Impact factor:   3.466


  21 in total

Review 1.  In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment.

Authors:  M H Kuo; C D Allis
Journal:  Methods       Date:  1999-11       Impact factor: 3.608

2.  Partitioning and plasticity of repressive histone methylation states in mammalian chromatin.

Authors:  Antoine H F M Peters; Stefan Kubicek; Karl Mechtler; Roderick J O'Sullivan; Alwin A H A Derijck; Laura Perez-Burgos; Alexander Kohlmaier; Susanne Opravil; Makoto Tachibana; Yoichi Shinkai; Joost H A Martens; Thomas Jenuwein
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

3.  Chromatin immunoprecipitation.

Authors:  Javier Rodríguez-Ubreva; Esteban Ballestar
Journal:  Methods Mol Biol       Date:  2014

Review 4.  H3K9 methyltransferase G9a and the related molecule GLP.

Authors:  Yoichi Shinkai; Makoto Tachibana
Journal:  Genes Dev       Date:  2011-04-15       Impact factor: 11.361

5.  The art of the chemical probe.

Authors:  Stephen V Frye
Journal:  Nat Chem Biol       Date:  2010-03       Impact factor: 15.040

Review 6.  SET domain proteins modulate chromatin domains in eu- and heterochromatin.

Authors:  T Jenuwein; G Laible; R Dorn; G Reuter
Journal:  Cell Mol Life Sci       Date:  1998-01       Impact factor: 9.261

7.  An orally bioavailable chemical probe of the Lysine Methyltransferases EZH2 and EZH1.

Authors:  Kyle D Konze; Anqi Ma; Fengling Li; Dalia Barsyte-Lovejoy; Trevor Parton; Christopher J Macnevin; Feng Liu; Cen Gao; Xi-Ping Huang; Ekaterina Kuznetsova; Marie Rougie; Alice Jiang; Samantha G Pattenden; Jacqueline L Norris; Lindsey I James; Bryan L Roth; Peter J Brown; Stephen V Frye; Cheryl H Arrowsmith; Klaus M Hahn; Gang Greg Wang; Masoud Vedadi; Jian Jin
Journal:  ACS Chem Biol       Date:  2013-04-24       Impact factor: 5.100

8.  G9a histone methyltransferase plays a dominant role in euchromatic histone H3 lysine 9 methylation and is essential for early embryogenesis.

Authors:  Makoto Tachibana; Kenji Sugimoto; Masami Nozaki; Jun Ueda; Tsutomu Ohta; Misao Ohki; Mikiko Fukuda; Naoki Takeda; Hiroyuki Niida; Hiroyuki Kato; Yoichi Shinkai
Journal:  Genes Dev       Date:  2002-07-15       Impact factor: 11.361

9.  Discovery of an in vivo chemical probe of the lysine methyltransferases G9a and GLP.

Authors:  Feng Liu; Dalia Barsyte-Lovejoy; Fengling Li; Yan Xiong; Victoria Korboukh; Xi-Ping Huang; Abdellah Allali-Hassani; William P Janzen; Bryan L Roth; Stephen V Frye; Cheryl H Arrowsmith; Peter J Brown; Masoud Vedadi; Jian Jin
Journal:  J Med Chem       Date:  2013-10-31       Impact factor: 7.446

10.  Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells.

Authors:  Bo Wen; Hao Wu; Yoichi Shinkai; Rafael A Irizarry; Andrew P Feinberg
Journal:  Nat Genet       Date:  2009-01-18       Impact factor: 38.330

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  15 in total

1.  A Role for Widely Interspaced Zinc Finger (WIZ) in Retention of the G9a Methyltransferase on Chromatin.

Authors:  Jeremy M Simon; Joel S Parker; Feng Liu; Scott B Rothbart; Slimane Ait-Si-Ali; Brian D Strahl; Jian Jin; Ian J Davis; Amber L Mosley; Samantha G Pattenden
Journal:  J Biol Chem       Date:  2015-09-03       Impact factor: 5.157

Review 2.  Inhibitors of Protein Methyltransferases and Demethylases.

Authors:  H Ümit Kaniskan; Michael L Martini; Jian Jin
Journal:  Chem Rev       Date:  2017-03-24       Impact factor: 60.622

3.  Structure-activity relationship studies of G9a-like protein (GLP) inhibitors.

Authors:  Yan Xiong; Fengling Li; Nicolas Babault; Hong Wu; Aiping Dong; Hong Zeng; Xin Chen; Cheryl H Arrowsmith; Peter J Brown; Jing Liu; Masoud Vedadi; Jian Jin
Journal:  Bioorg Med Chem       Date:  2017-06-19       Impact factor: 3.641

4.  Discovery of Potent and Selective Inhibitors for G9a-Like Protein (GLP) Lysine Methyltransferase.

Authors:  Yan Xiong; Fengling Li; Nicolas Babault; Aiping Dong; Hong Zeng; Hong Wu; Xin Chen; Cheryl H Arrowsmith; Peter J Brown; Jing Liu; Masoud Vedadi; Jian Jin
Journal:  J Med Chem       Date:  2017-02-14       Impact factor: 7.446

Review 5.  Inhibitors of protein methyltransferases as chemical tools.

Authors:  Minkui Luo
Journal:  Epigenomics       Date:  2015-12-08       Impact factor: 4.778

6.  Selective inhibitors of protein methyltransferases.

Authors:  H Ümit Kaniskan; Kyle D Konze; Jian Jin
Journal:  J Med Chem       Date:  2014-12-02       Impact factor: 7.446

7.  Identification of 2,4-diamino-6,7-dimethoxyquinoline derivatives as G9a inhibitors†Electronic supplementary information (ESI) available. See DOI: 10.1039/c4md00274a.

Authors:  Nitipol Srimongkolpithak; Sandeep Sundriyal; Fengling Li; Masoud Vedadi; Matthew J Fuchter
Journal:  Medchemcomm       Date:  2014-09-11       Impact factor: 3.597

Review 8.  Studying epigenetic complexes and their inhibitors with the proteomics toolbox.

Authors:  David Weigt; Carsten Hopf; Guillaume Médard
Journal:  Clin Epigenetics       Date:  2016-07-18       Impact factor: 6.551

Review 9.  Synthesis of lysine methyltransferase inhibitors.

Authors:  Chunngai Hui; Tao Ye
Journal:  Front Chem       Date:  2015-07-23       Impact factor: 5.221

10.  Discovery of a selective, substrate-competitive inhibitor of the lysine methyltransferase SETD8.

Authors:  Anqi Ma; Wenyu Yu; Fengling Li; Rachel M Bleich; J Martin Herold; Kyle V Butler; Jacqueline L Norris; Victoria Korboukh; Ashutosh Tripathy; William P Janzen; Cheryl H Arrowsmith; Stephen V Frye; Masoud Vedadi; Peter J Brown; Jian Jin
Journal:  J Med Chem       Date:  2014-07-25       Impact factor: 7.446

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