Literature DB >> 24440609

Influence of heme environment structure on dioxygen affinity for the dual function Amphitrite ornata hemoglobin/dehaloperoxidase. Insights into the evolutional structure-function adaptations.

Shengfang Sun1, Masanori Sono2, Chunxue Wang1, Jing Du1, Lukasz Lebioda3, John H Dawson4.   

Abstract

Sea worm, Amphitrite ornata, has evolved its globin (an O(2) carrier) also to serves as a dehaloperoxidase (DHP) to detoxify haloaromatic pollutants generated by competing species. A previous mutagenesis study by our groups on both DHP and sperm whale myoglobin (SW Mb) revealed some structural factors that influence the dehaloperoxidase activities (significantly lower for Mb) of both proteins. Using an isocyanide/O(2) partition constant measurement method in this study, we have examined the effects of these structural factors on the O(2) equilibrium constants (KO2) of DHP, SW Mb, and their mutants. A clear trend of decreasing O(2) affinity and increasing catalytic activity along with the increase in the distal His N(ε)-heme iron distance is observed. An H93K/T95H Mb double mutant mimicking the DHP proximal His positioning exhibited markedly enhanced O(2) affinity, confirming the essential effect of proximal His rotation on the globin function of DHP. For DHP, the L100F, T56G and M86E variants showed the effects of distal volume, distal His flexibility and proximal electronic push, respectively, on the O(2) affinity. This study provides insights into how DHP has evolved its heme environment to gain significantly enhanced peroxidase capability without compromising its primary function as an O(2) carrier.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Amphitrite ornata dehaloperoxidase (DHP); Evolutional structure–function adaptations; Heme environment mutants; O(2) affinity; Sperm whale myoglobin (Mb)

Mesh:

Substances:

Year:  2014        PMID: 24440609     DOI: 10.1016/j.abb.2014.01.010

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  8 in total

1.  Change in structure and ligand binding properties of hyperstable cytochrome c555 from Aquifex aeolicus by domain swapping.

Authors:  Masaru Yamanaka; Satoshi Nagao; Hirofumi Komori; Yoshiki Higuchi; Shun Hirota
Journal:  Protein Sci       Date:  2015-01-14       Impact factor: 6.725

2.  Selective tuning of activity in a multifunctional enzyme as revealed in the F21W mutant of dehaloperoxidase B from Amphitrite ornata.

Authors:  Leiah M Carey; Kyung Beom Kim; Nikolette L McCombs; Paul Swartz; Cheal Kim; Reza A Ghiladi
Journal:  J Biol Inorg Chem       Date:  2017-11-23       Impact factor: 3.358

3.  Reactions of Ferrous Coproheme Decarboxylase (HemQ) with O2 and H2O2 Yield Ferric Heme b.

Authors:  Bennett R Streit; Arianna I Celis; Krista Shisler; Kenton R Rodgers; Gudrun S Lukat-Rodgers; Jennifer L DuBois
Journal:  Biochemistry       Date:  2016-12-16       Impact factor: 3.162

Review 4.  Design of artificial metalloproteins/metalloenzymes by tuning noncovalent interactions.

Authors:  Shun Hirota; Ying-Wu Lin
Journal:  J Biol Inorg Chem       Date:  2017-12-07       Impact factor: 3.358

5.  Oxidation of Pyrrole by Dehaloperoxidase-Hemoglobin: Chemoenzymatic Synthesis of Pyrrolin-2-Ones.

Authors:  Nikolette L McCombs; Tatyana Smirnova; Reza A Ghiladi
Journal:  Catal Sci Technol       Date:  2017-07-21       Impact factor: 6.119

6.  An oxidative N-demethylase reveals PAS transition from ubiquitous sensor to enzyme.

Authors:  Mary Ortmayer; Pierre Lafite; Binuraj R K Menon; Tewes Tralau; Karl Fisher; Lukas Denkhaus; Nigel S Scrutton; Stephen E J Rigby; Andrew W Munro; Sam Hay; David Leys
Journal:  Nature       Date:  2016-11-16       Impact factor: 49.962

7.  Complementarity of neutron, XFEL and synchrotron crystallography for defining the structures of metalloenzymes at room temperature.

Authors:  Tadeo Moreno-Chicano; Leiah M Carey; Danny Axford; John H Beale; R Bruce Doak; Helen M E Duyvesteyn; Ali Ebrahim; Robert W Henning; Diana C F Monteiro; Dean A Myles; Shigeki Owada; Darren A Sherrell; Megan L Straw; Vukica Šrajer; Hiroshi Sugimoto; Kensuke Tono; Takehiko Tosha; Ivo Tews; Martin Trebbin; Richard W Strange; Kevin L Weiss; Jonathan A R Worrall; Flora Meilleur; Robin L Owen; Reza A Ghiladi; Michael A Hough
Journal:  IUCrJ       Date:  2022-07-25       Impact factor: 5.588

8.  Molecular characterization of Clonorchis sinensis secretory myoglobin: delineating its role in anti-oxidative survival.

Authors:  Mengyu Ren; Lei He; Yan Huang; Qiang Mao; Shan Li; Honglin Qu; Meng Bian; Pei Liang; Xueqing Chen; Jinsi Ling; Tingjing Chen; Chi Liang; Xiaoyun Wang; Xuerong Li; Xinbing Yu
Journal:  Parasit Vectors       Date:  2014-05-29       Impact factor: 3.876

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.