Literature DB >> 27851736

An oxidative N-demethylase reveals PAS transition from ubiquitous sensor to enzyme.

Mary Ortmayer1, Pierre Lafite1, Binuraj R K Menon1, Tewes Tralau1, Karl Fisher1, Lukas Denkhaus1, Nigel S Scrutton1, Stephen E J Rigby1, Andrew W Munro1, Sam Hay1, David Leys1.   

Abstract

The universal Per-ARNT-Sim (PAS) domain functions as a signal transduction module involved in sensing diverse stimuli such as small molecules, light, redox state and gases. The highly evolvable PAS scaffold can bind a broad range of ligands, including haem, flavins and metal ions. However, although these ligands can support catalytic activity, to our knowledge no enzymatic PAS domain has been found. Here we report characterization of the first PAS enzyme: a haem-dependent oxidative N-demethylase. Unrelated to other amine oxidases, this enzyme contains haem, flavin mononucleotide, 2Fe-2S and tetrahydrofolic acid cofactors, and specifically catalyses the NADPH-dependent oxidation of dimethylamine. The structure of the α subunit reveals that it is a haem-binding PAS domain, similar in structure to PAS gas sensors. The dimethylamine substrate forms part of a highly polarized oxygen-binding site, and directly assists oxygen activation by acting as both an electron and proton donor. Our data reveal that the ubiquitous PAS domain can make the transition from sensor to enzyme, suggesting that the PAS scaffold can support the development of artificial enzymes.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27851736     DOI: 10.1038/nature20159

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  35 in total

1.  Determination of the redox properties of human NADPH-cytochrome P450 reductase.

Authors:  A W Munro; M A Noble; L Robledo; S N Daff; S K Chapman
Journal:  Biochemistry       Date:  2001-02-20       Impact factor: 3.162

2.  NMR-derived models of amidopyrine and its metabolites in complexes with rabbit cytochrome P450 2B4 reveal a structural mechanism of sequential N-dealkylation.

Authors:  Arthur G Roberts; Sara E A Sjögren; Nadezda Fomina; Kathy T Vu; Adah Almutairi; James R Halpert
Journal:  Biochemistry       Date:  2011-03-04       Impact factor: 3.162

Review 3.  Ligand-binding PAS domains in a genomic, cellular, and structural context.

Authors:  Jonathan T Henry; Sean Crosson
Journal:  Annu Rev Microbiol       Date:  2011       Impact factor: 15.500

4.  Enzymological aspects of the pathways for trimethylamine oxidation and C1 assimilation of obligate methylotrophs and restricted facultative methylotrophs.

Authors:  J Colby; L J Zatman
Journal:  Biochem J       Date:  1975-06       Impact factor: 3.857

5.  Spectroscopic characterization of secondary amine mono-oxygenase. Comparison to cytochrome P-450 and myoglobin.

Authors:  J A Alberta; L A Andersson; J H Dawson
Journal:  J Biol Chem       Date:  1989-12-05       Impact factor: 5.157

Review 6.  Mechanisms of human histone and nucleic acid demethylases.

Authors:  Louise J Walport; Richard J Hopkinson; Christopher J Schofield
Journal:  Curr Opin Chem Biol       Date:  2012-10-10       Impact factor: 8.822

Review 7.  Structure and signaling mechanism of Per-ARNT-Sim domains.

Authors:  Andreas Möglich; Rebecca A Ayers; Keith Moffat
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

8.  Conversion of a heme-based oxygen sensor to a heme oxygenase by hydrogen sulfide: effects of mutations in the heme distal side of a heme-based oxygen sensor phosphodiesterase (Ec DOS).

Authors:  Yongming Du; Gefei Liu; Yinxia Yan; Dongyang Huang; Wenhong Luo; Marketa Martinkova; Petr Man; Toru Shimizu
Journal:  Biometals       Date:  2013-06-05       Impact factor: 2.949

Review 9.  Peroxide-utilizing biocatalysts: structural and functional diversity of heme-containing enzymes.

Authors:  Isamu Matsunaga; Yoshitsugu Shiro
Journal:  Curr Opin Chem Biol       Date:  2004-04       Impact factor: 8.822

10.  Electron nuclear double resonance and electron paramagnetic resonance study on the structure of the NO-ligated heme alpha 3 in cytochrome c oxidase.

Authors:  R LoBrutto; Y H Wei; R Mascarenhas; C P Scholes; T E King
Journal:  J Biol Chem       Date:  1983-06-25       Impact factor: 5.157

View more
  3 in total

1.  Mycobacterium tuberculosis Rv3651 is a triple sensor-domain protein.

Authors:  Jan Abendroth; Andrew Frando; Isabelle Q Phan; Bart L Staker; Peter J Myler; Thomas E Edwards; Christoph Grundner
Journal:  Protein Sci       Date:  2017-12-05       Impact factor: 6.725

Review 2.  Harnessing Conformational Plasticity to Generate Designer Enzymes.

Authors:  Rory M Crean; Jasmine M Gardner; Shina C L Kamerlin
Journal:  J Am Chem Soc       Date:  2020-06-17       Impact factor: 15.419

3.  Phylogenetic Analysis with Prediction of Cofactor or Ligand Binding for Pseudomonas aeruginosa PAS and Cache Domains.

Authors:  Andrew Hutchin; Charlotte Cordery; Martin A Walsh; Jeremy S Webb; Ivo Tews
Journal:  Microbiol Spectr       Date:  2021-12-22
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.