Literature DB >> 24430203

Optical measurements of long-range protein vibrations.

Gheorghe Acbas1, Katherine A Niessen1, Edward H Snell2, A G Markelz3.   

Abstract

Protein biological function depends on structural flexibility and change. From cellular communication through membrane ion channels to oxygen uptake and delivery by haemoglobin, structural changes are critical. It has been suggested that vibrations that extend through the protein play a crucial role in controlling these structural changes. While nature may utilize such long-range vibrations for optimization of biological processes, bench-top characterization of these extended structural motions for engineered biochemistry has been elusive. Here we show the first optical observation of long-range protein vibrational modes. This is achieved by orientation-sensitive terahertz near-field microscopy measurements of chicken egg white lysozyme single crystals. Underdamped modes are found to exist for frequencies >10 cm(-1). The existence of these persisting motions indicates that damping and intermode coupling are weaker than previously assumed. The methodology developed permits protein engineering based on dynamical network optimization.

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Year:  2014        PMID: 24430203     DOI: 10.1038/ncomms4076

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  36 in total

1.  Tunable compact narrow band THz sources for frequency domain THz anisotropic spectroscopy.

Authors:  D K George; T J LaFAve; A G Markelz; Ian McNee; Peter Schunemann
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2019-05-13

2.  Calculation of the infrared spectra of proteins.

Authors:  Adam J Mott; Peter Rez
Journal:  Eur Biophys J       Date:  2014-12-24       Impact factor: 1.733

3.  Far-infrared spectroscopy of salt penetration into a collagen fiber scaffold.

Authors:  Maya Mizuno; Akira Yamada; Kaori Fukunaga; Hiroaki Kojima
Journal:  J Biol Phys       Date:  2015-03-13       Impact factor: 1.365

Review 4.  Locating and Navigating Energy Transport Networks in Proteins.

Authors:  Korey M Reid; David M Leitner
Journal:  Methods Mol Biol       Date:  2021

5.  Moving in the Right Direction: Protein Vibrations Steering Function.

Authors:  Katherine A Niessen; Mengyang Xu; Alessandro Paciaroni; Andrea Orecchini; Edward H Snell; Andrea G Markelz
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

Review 6.  Terahertz optical measurements of correlated motions with possible allosteric function.

Authors:  Katherine A Niessen; Mengyang Xu; A G Markelz
Journal:  Biophys Rev       Date:  2015-04-07

7.  Elusive vibrations.

Authors:  Allison Doerr
Journal:  Nat Methods       Date:  2014-03       Impact factor: 28.547

Review 8.  Integrative, dynamic structural biology at atomic resolution--it's about time.

Authors:  Henry van den Bedem; James S Fraser
Journal:  Nat Methods       Date:  2015-04       Impact factor: 28.547

9.  Terahertz-infrared spectroscopy of Shewanella oneidensis MR-1 extracellular matrix.

Authors:  Z V Gagkaeva; E S Zhukova; V Grinenko; A K Grebenko; K V Sidoruk; T A Voeikova; M Dressel; B P Gorshunov
Journal:  J Biol Phys       Date:  2018-05-07       Impact factor: 1.365

10.  Near-field THz micropolarimetry.

Authors:  Katherine Niessen; Yanting Deng; A G Markelz
Journal:  Opt Express       Date:  2019-09-30       Impact factor: 3.894

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