Literature DB >> 28510171

Terahertz optical measurements of correlated motions with possible allosteric function.

Katherine A Niessen1, Mengyang Xu1, A G Markelz2.   

Abstract

A suggested mechanism for allosteric response is the distortion of the energy landscape with agonist binding changing the protein structure's access to functional configurations. Intramolecular vibrations are indicative of the energy landscape and may have trajectories that enable functional conformational change. Here, we discuss the development of an optical method to measure the intramolecular vibrations in proteins, namely, crystal anisotropy terahertz microscopy, and the various approaches which can be used to identify the spectral data with specific structural motions.

Keywords:  Allosteric response; Far infrared; Functional configurations; Normal modes; Proteins; Terahertz; Vibrational modes

Year:  2015        PMID: 28510171      PMCID: PMC5425745          DOI: 10.1007/s12551-015-0168-4

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  25 in total

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Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

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Authors:  Gheorghe Acbas; Katherine A Niessen; Edward H Snell; A G Markelz
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

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Journal:  Nat Struct Mol Biol       Date:  2011-09-18       Impact factor: 15.369

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Journal:  Biochemistry       Date:  1966-01       Impact factor: 3.162

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Authors:  Vincent J Hilser; James O Wrabl; Hesam N Motlagh
Journal:  Annu Rev Biophys       Date:  2012       Impact factor: 12.981

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Authors:  Chung-Jung Tsai; Antonio Del Sol; Ruth Nussinov
Journal:  Mol Biosyst       Date:  2009-01-06
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  6 in total

1.  Tunable compact narrow band THz sources for frequency domain THz anisotropic spectroscopy.

Authors:  D K George; T J LaFAve; A G Markelz; Ian McNee; Peter Schunemann
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2019-05-13

2.  Moving in the Right Direction: Protein Vibrations Steering Function.

Authors:  Katherine A Niessen; Mengyang Xu; Alessandro Paciaroni; Andrea Orecchini; Edward H Snell; Andrea G Markelz
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

3.  Near-field THz micropolarimetry.

Authors:  Katherine Niessen; Yanting Deng; A G Markelz
Journal:  Opt Express       Date:  2019-09-30       Impact factor: 3.894

4.  Clustering of atomic displacement parameters in bovine trypsin reveals a distributed lattice of atoms with shared chemical properties.

Authors:  Viktor Ahlberg Gagnér; Ida Lundholm; Maria-Jose Garcia-Bonete; Helena Rodilla; Ran Friedman; Vitali Zhaunerchyk; Gleb Bourenkov; Thomas Schneider; Jan Stake; Gergely Katona
Journal:  Sci Rep       Date:  2019-12-17       Impact factor: 4.379

5.  Metallodrug-protein interaction probed by synchrotron terahertz and neutron scattering spectroscopy.

Authors:  Luis Alberto Esteves Batista de Carvalho; Adriana Pereira Mamede; Ana Lucia Marques Batista de Carvalho; Joana Marques; Gianfelice Cinque; Svemir Rudić; Maria Paula Matos Marques
Journal:  Biophys J       Date:  2021-06-30       Impact factor: 3.699

6.  Role of Terahertz (THz) Fluctuations in the Allosteric Properties of the PDZ Domains.

Authors:  Valeria Conti Nibali; Giulia Morra; Martina Havenith; Giorgio Colombo
Journal:  J Phys Chem B       Date:  2017-10-31       Impact factor: 2.991

  6 in total

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