Literature DB >> 21582871

N'-(Di-2-pyridylmethyl-ene)benzo-hydrazide.

Ismail Warad, Mohammed Al-Nuri, Saud Al-Resayes, Khalid Al-Farhan, Mohamed Ghazzali.   

Abstract

In the title Schiff base, C(18)H(14)N(4)O, the amido -NH- unit is connected to one of the two pyridyl N atoms at an N(-H)⋯N distance of 2.624 (2) Å. The mol-ecular packing features an inter-molecular C-H⋯N R(2) (2)(6) hydrogen-bonding ring motif.

Entities:  

Year:  2009        PMID: 21582871      PMCID: PMC2969230          DOI: 10.1107/S1600536809022090

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For medicinal applications of benzohydrazides, see: Raparti et al. (2009 ▶); Zhong et al. (2007 ▶). For a previous study on the synthesis of benzohyrazide derivatives, see: Abu-El-Halawa et al. (2007 ▶). For ring-motif analysis; see: Bernstein et al. (1995 ▶); Grell et al. (1999 ▶).

Experimental

Crystal data

C18H14N4O M = 302.33 Monoclinic, a = 8.2741 (5) Å b = 22.1436 (14) Å c = 8.8006 (5) Å β = 108.974 (2)° V = 1524.82 (15) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 295 K 0.50 × 0.30 × 0.10 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2007 ▶) T min = 0.968, T max = 0.989 33115 measured reflections 3491 independent reflections 2329 reflections with I > 2δ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.169 S = 0.99 3491 reflections 208 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶) and PLUTO (Motherwell et al., 1999 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809022090/ng2595sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022090/ng2595Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H14N4OF(000) = 632
Mr = 302.33Dx = 1.317 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71075 Å
Hall symbol: -P 2ybcCell parameters from 880 reflections
a = 8.2741 (5) Åθ = 3.0–27.4°
b = 22.1436 (14) ŵ = 0.09 mm1
c = 8.8006 (5) ÅT = 295 K
β = 108.974 (2)°Block, colourless
V = 1524.82 (15) Å30.50 × 0.30 × 0.10 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer3491 independent reflections
Radiation source: fine-focus sealed tube2329 reflections with I > 2δ(I)
graphiteRint = 0.050
ω scansθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2007)h = −10→10
Tmin = 0.968, Tmax = 0.989k = −28→28
33115 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.169H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.1092P)2 + 0.076P] where P = (Fo2 + 2Fc2)/3
3491 reflections(Δ/σ)max < 0.001
208 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.17708 (18)0.55123 (6)0.48480 (14)0.0649 (4)
N10.21198 (18)0.51374 (6)0.73562 (16)0.0485 (4)
H70.19020.51860.82400.058*
C10.1073 (2)0.62760 (7)0.8228 (2)0.0513 (4)
H10.17870.60450.90580.062*
N20.29967 (18)0.46379 (6)0.71474 (16)0.0472 (3)
C20.0312 (2)0.67909 (8)0.8581 (2)0.0598 (5)
H20.05260.69070.96440.072*
N30.22378 (18)0.47159 (6)1.01763 (16)0.0509 (4)
C3−0.0768 (2)0.71315 (8)0.7347 (2)0.0604 (5)
H3−0.12800.74770.75830.072*
N40.4144 (2)0.31839 (6)0.84066 (19)0.0550 (4)
C4−0.1087 (2)0.69618 (8)0.5779 (2)0.0590 (5)
H4−0.18290.71890.49560.071*
C5−0.0308 (2)0.64538 (8)0.5414 (2)0.0524 (4)
H5−0.05090.63460.43460.063*
C60.0777 (2)0.61027 (7)0.66396 (19)0.0455 (4)
C70.1590 (2)0.55591 (7)0.61664 (19)0.0485 (4)
C80.3333 (2)0.42967 (7)0.99547 (18)0.0432 (4)
C90.4310 (2)0.39466 (8)1.1233 (2)0.0527 (4)
H90.50480.36551.10720.063*
C100.4182 (3)0.40325 (8)1.2745 (2)0.0572 (5)
H100.48450.38041.36090.069*
C110.3068 (2)0.44583 (8)1.2965 (2)0.0533 (4)
H110.29580.45231.39710.064*
C120.2125 (2)0.47854 (8)1.1649 (2)0.0551 (4)
H120.13630.50721.17890.066*
C130.3515 (2)0.42534 (7)0.83260 (18)0.0433 (4)
C140.4492 (2)0.37362 (7)0.79543 (18)0.0444 (4)
C150.5690 (2)0.38299 (8)0.71803 (19)0.0514 (4)
H150.58800.42160.68560.062*
C160.6594 (2)0.33445 (9)0.6899 (2)0.0611 (5)
H160.74150.33990.63990.073*
C170.6260 (3)0.27757 (9)0.7371 (2)0.0645 (5)
H170.68530.24400.71990.077*
C180.5033 (3)0.27192 (8)0.8099 (2)0.0617 (5)
H180.48020.23340.83990.074*
U11U22U33U12U13U23
O10.0939 (10)0.0613 (8)0.0480 (7)0.0160 (7)0.0345 (7)0.0053 (6)
N10.0645 (9)0.0402 (7)0.0455 (8)0.0074 (6)0.0244 (7)0.0017 (5)
C10.0561 (10)0.0503 (9)0.0458 (9)0.0045 (7)0.0141 (8)0.0005 (7)
N20.0561 (8)0.0404 (7)0.0474 (8)0.0030 (6)0.0197 (6)−0.0015 (6)
C20.0679 (12)0.0604 (11)0.0519 (10)0.0054 (9)0.0209 (9)−0.0086 (8)
N30.0565 (9)0.0531 (8)0.0476 (8)0.0065 (6)0.0230 (6)0.0016 (6)
C30.0657 (12)0.0517 (10)0.0663 (12)0.0110 (8)0.0251 (10)−0.0015 (8)
N40.0674 (10)0.0388 (7)0.0649 (9)−0.0004 (6)0.0300 (8)−0.0024 (6)
C40.0631 (11)0.0563 (10)0.0579 (11)0.0115 (8)0.0204 (9)0.0128 (8)
C50.0606 (10)0.0517 (9)0.0463 (9)0.0027 (8)0.0192 (8)0.0053 (7)
C60.0506 (9)0.0430 (8)0.0454 (9)−0.0013 (7)0.0192 (7)0.0018 (6)
C70.0570 (10)0.0464 (9)0.0444 (9)0.0018 (7)0.0197 (7)0.0023 (7)
C80.0476 (9)0.0383 (8)0.0456 (9)−0.0028 (6)0.0176 (7)−0.0025 (6)
C90.0607 (10)0.0493 (9)0.0488 (9)0.0084 (8)0.0188 (8)0.0000 (7)
C100.0720 (12)0.0539 (10)0.0439 (9)0.0034 (8)0.0165 (8)0.0025 (7)
C110.0668 (11)0.0527 (10)0.0452 (9)−0.0066 (8)0.0249 (8)−0.0041 (7)
C120.0623 (11)0.0565 (10)0.0538 (10)0.0040 (8)0.0289 (9)−0.0021 (8)
C130.0477 (9)0.0407 (8)0.0427 (8)−0.0021 (6)0.0165 (7)−0.0027 (6)
C140.0495 (9)0.0417 (8)0.0409 (8)−0.0002 (6)0.0132 (7)−0.0025 (6)
C150.0564 (10)0.0511 (9)0.0487 (9)−0.0005 (7)0.0197 (8)0.0007 (7)
C160.0597 (11)0.0703 (12)0.0584 (11)0.0085 (9)0.0264 (9)−0.0030 (9)
C170.0699 (12)0.0594 (11)0.0622 (12)0.0174 (9)0.0189 (10)−0.0082 (9)
C180.0770 (13)0.0423 (9)0.0672 (12)0.0041 (8)0.0255 (10)−0.0031 (8)
O1—C71.2217 (18)C6—C71.502 (2)
N1—C71.365 (2)C8—C91.389 (2)
N1—N21.3677 (17)C8—C131.492 (2)
N1—H70.8600C9—C101.382 (2)
C1—C21.386 (2)C9—H90.9300
C1—C61.392 (2)C10—C111.375 (2)
C1—H10.9300C10—H100.9300
N2—C131.302 (2)C11—C121.374 (2)
C2—C31.384 (3)C11—H110.9300
C2—H20.9300C12—H120.9300
N3—C121.338 (2)C13—C141.498 (2)
N3—C81.355 (2)C14—C151.389 (2)
C3—C41.371 (3)C15—C161.377 (2)
C3—H30.9300C15—H150.9300
N4—C181.343 (2)C16—C171.382 (3)
N4—C141.3458 (19)C16—H160.9300
C4—C51.385 (2)C17—C181.371 (3)
C4—H40.9300C17—H170.9300
C5—C61.394 (2)C18—H180.9300
C5—H50.9300
C7—N1—N2120.17 (13)C10—C9—C8119.78 (15)
C7—N1—H7119.9C10—C9—H9120.1
N2—N1—H7119.9C8—C9—H9120.1
C2—C1—C6120.52 (16)C11—C10—C9119.62 (16)
C2—C1—H1119.7C11—C10—H10120.2
C6—C1—H1119.7C9—C10—H10120.2
C13—N2—N1118.27 (12)C12—C11—C10117.75 (15)
C3—C2—C1119.78 (16)C12—C11—H11121.1
C3—C2—H2120.1C10—C11—H11121.1
C1—C2—H2120.1N3—C12—C11123.82 (16)
C12—N3—C8118.61 (14)N3—C12—H12118.1
C4—C3—C2120.29 (16)C11—C12—H12118.1
C4—C3—H3119.9N2—C13—C8127.81 (14)
C2—C3—H3119.9N2—C13—C14112.79 (13)
C18—N4—C14116.92 (15)C8—C13—C14119.29 (13)
C3—C4—C5120.30 (16)N4—C14—C15122.42 (15)
C3—C4—H4119.8N4—C14—C13116.60 (14)
C5—C4—H4119.8C15—C14—C13120.98 (14)
C4—C5—C6120.28 (16)C16—C15—C14119.18 (16)
C4—C5—H5119.9C16—C15—H15120.4
C6—C5—H5119.9C14—C15—H15120.4
C1—C6—C5118.80 (15)C15—C16—C17118.97 (17)
C1—C6—C7123.43 (14)C15—C16—H16120.5
C5—C6—C7117.76 (14)C17—C16—H16120.5
O1—C7—N1124.24 (15)C18—C17—C16118.30 (17)
O1—C7—C6122.38 (14)C18—C17—H17120.8
N1—C7—C6113.37 (13)C16—C17—H17120.9
N3—C8—C9120.41 (14)N4—C18—C17124.18 (17)
N3—C8—C13117.62 (13)N4—C18—H18117.9
C9—C8—C13121.88 (14)C17—C18—H18117.9
D—H···AD—HH···AD···AD—H···A
N1—H7···N30.861.942.624 (2)136
C9—H9···N40.932.452.973 (2)115
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H7⋯N30.861.942.624 (2)136
C9—H9⋯N40.932.452.973 (2)115
  5 in total

1.  Visualization and characterization of non-covalent networks in molecular crystals: automated assignment of graph-set descriptors for asymmetric molecules.

Authors: 
Journal:  Acta Crystallogr B       Date:  1999-12-01

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns: some mathematical concepts.

Authors: 
Journal:  Acta Crystallogr B       Date:  1999-12-01

4.  The crystal structures of copper(II), manganese(II), and nickel(II) complexes of a (Z)-2-hydroxy-N'-(2-oxoindolin-3-ylidene) benzohydrazide--potential antitumor agents.

Authors:  Xia Zhong; Hu-Lai Wei; Wei-Sheng Liu; Da-Qi Wang; Xing Wang
Journal:  Bioorg Med Chem Lett       Date:  2007-04-10       Impact factor: 2.823

5.  Novel 4-(morpholin-4-yl)-N'-(arylidene)benzohydrazides: synthesis, antimycobacterial activity and QSAR investigations.

Authors:  Vyankatesh Raparti; Trupti Chitre; Kailas Bothara; Vanaja Kumar; Sudarshan Dangre; Chetan Khachane; Suraj Gore; Bhavana Deshmane
Journal:  Eur J Med Chem       Date:  2009-04-22       Impact factor: 6.514

  5 in total
  6 in total

1.  (E)-N'-(5-Bromo-2-hy-droxy-benzyl-idene)-2-meth-oxy-benzohydrazide.

Authors:  Shi-Yong Liu; Zhonglu You
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

2.  (E)-N'-[4-(Dimethyl-amino)-benzyl-idene]-2-meth-oxy-benzohydrazide.

Authors:  Shi-Yong Liu; Xiaoling Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

3.  (E)-N'-(5-Bromo-2-hy-droxy-benzyl-idene)-4-hy-droxy-3-meth-oxy-benzohydrazide methanol solvate.

Authors:  Shi-Yong Liu; Zhonglu You
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

4.  (E)-N'-(5-Bromo-2-hy-droxy-benzyl-idene)-3-meth-oxy-benzohydrazide.

Authors:  Shi-Yong Liu; Xiaoling Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

5.  (E)-N'-(4-Hy-droxy-benzyl-idene)-2-nitro-benzohydrazide.

Authors:  Shi-Yong Liu; Zhonglu You
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

6.  N'-[(E)-2-Chloro-benzyl-idene]thio-phene-2-carbohydrazide.

Authors:  Ismail Warad; Salim F Haddad; Mousa Al-Noaimi; Belkheir Hammouti; Taibi Ben Hadda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-17
  6 in total

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