Literature DB >> 24427051

6,8-Di-chloro-4-oxochromene-3-carbalde-hyde.

Yoshinobu Ishikawa1, Yuya Motohashi1.   

Abstract

The asymmetric unit of the title compound, C10H4Cl2O3, contain two essentially planar independent mol-ecules (mean atomic deviations from the corresponding least-square planes are 0.041 and 0.045 Å for mol-ecules 1 and 2, respectively). In the crystal, mol-ecules are linked through a pair of halogen bonds [Cl⋯O separations are 3.044 (5) and 3.033 (6) Å, C-Cl⋯O angles are 160.4 (3) and 162.8 (3)°, and C=O⋯Cl angles are 138.7 (4) and 139.6 (4)°, respectively, in mol-ecules 1 and 2] and C-H⋯O hydrogen bonds into slightly folded bands [the dihedral angle between the planes of neighboring mol-ecules is 8.6 (2)°] along the c-axis direction.

Entities:  

Year:  2013        PMID: 24427051      PMCID: PMC3884433          DOI: 10.1107/S1600536813022228

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of the title and related compounds, see: Shim et al. (2003 ▶); Kawase et al. (2007 ▶); Dückert et al. (2012 ▶). For related structures, see: Ishikawa et al. (2013a ▶,b ▶). For halogen bonding, see: Auffinger et al. (2004 ▶); Metrangolo et al. (2005 ▶); Wilcken et al. (2013 ▶).

Experimental

Crystal data

C10H4Cl2O3 M = 243.05 Triclinic, a = 8.288 (8) Å b = 8.325 (7) Å c = 13.706 (7) Å α = 96.55 (6)° β = 92.23 (7)° γ = 101.98 (7)° V = 917.2 (13) Å3 Z = 4 Mo Kα radiation μ = 0.68 mm−1 T = 100 K 0.42 × 0.22 × 0.08 mm

Data collection

Rigaku AFC-7R diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.841, T max = 0.947 5130 measured reflections 4203 independent reflections 2596 reflections with F 2 > 2σ(F 2) R int = 0.057 3 standard reflections every 150 reflections intensity decay: 4.9%

Refinement

R[F 2 > 2σ(F 2)] = 0.076 wR(F 2) = 0.212 S = 1.10 4203 reflections 271 parameters H-atom parameters constrained Δρmax = 0.70 e Å−3 Δρmin = −0.79 e Å−3 Data collection: WinAFC (Rigaku, 1999 ▶); cell refinement: WinAFC; data reduction: WinAFC; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: CrystalStructure (Rigaku, 2010 ▶); software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablock(s) General, I. DOI: 10.1107/S1600536813022228/ld2111sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813022228/ld2111Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813022228/ld2111Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H4Cl2O3Z = 4
Mr = 243.05F(000) = 488.00
Triclinic, P1Dx = 1.760 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71069 Å
a = 8.288 (8) ÅCell parameters from 23 reflections
b = 8.325 (7) Åθ = 15.2–17.4°
c = 13.706 (7) ŵ = 0.68 mm1
α = 96.55 (6)°T = 100 K
β = 92.23 (7)°Prismatic, colourless
γ = 101.98 (7)°0.42 × 0.22 × 0.08 mm
V = 917.2 (13) Å3
Rigaku AFC-7R diffractometerRint = 0.057
ω–2θ scansθmax = 27.5°
Absorption correction: ψ scan (North et al., 1968)h = −10→6
Tmin = 0.841, Tmax = 0.947k = −10→10
5130 measured reflectionsl = −17→17
4203 independent reflections3 standard reflections every 150 reflections
2596 reflections with F2 > 2σ(F2) intensity decay: 4.9%
Refinement on F2Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.076Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.212H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0531P)2 + 6.620P] where P = (Fo2 + 2Fc2)/3
4203 reflections(Δ/σ)max < 0.001
271 parametersΔρmax = 0.70 e Å3
0 restraintsΔρmin = −0.79 e Å3
Primary atom site location: structure-invariant direct methods
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).
xyzUiso*/Ueq
Cl1a0.9284 (2)0.7180 (2)−0.05206 (12)0.0275 (4)
Cl2a0.8997 (2)0.60177 (19)0.32529 (11)0.0243 (4)
Cl1b0.8654 (3)1.0637 (2)0.20783 (12)0.0293 (4)
Cl2b0.7665 (2)1.01839 (19)0.59010 (11)0.0246 (4)
O1a0.6255 (6)0.3339 (5)0.2521 (3)0.0218 (10)
O2a0.4506 (6)0.1743 (6)−0.0336 (4)0.0277 (11)
O3a0.2398 (7)−0.0767 (6)0.1869 (4)0.0319 (12)
O1b0.4940 (6)0.7493 (6)0.5162 (3)0.0219 (10)
O2b0.3559 (6)0.5491 (6)0.2305 (3)0.0291 (11)
O3b0.1021 (7)0.3424 (6)0.4522 (4)0.0326 (12)
C1a0.4980 (8)0.2042 (8)0.2288 (5)0.0221 (13)
C2a0.4342 (8)0.1454 (8)0.1358 (5)0.0197 (13)
C3a0.5023 (8)0.2255 (8)0.0520 (5)0.0217 (13)
C4a0.7126 (9)0.4638 (8)0.0063 (5)0.0242 (14)
C5a0.8382 (8)0.5956 (8)0.0344 (5)0.0201 (13)
C6a0.9020 (8)0.6399 (8)0.1321 (5)0.0202 (13)
C7a0.8290 (8)0.5497 (8)0.2026 (5)0.0197 (13)
C8a0.6945 (8)0.4171 (8)0.1770 (5)0.0202 (13)
C9a0.6370 (9)0.3695 (8)0.0784 (5)0.0207 (13)
C10a0.2954 (9)−0.0026 (8)0.1204 (5)0.0250 (14)
C1b0.3630 (8)0.6197 (8)0.4918 (5)0.0220 (13)
C2b0.3130 (8)0.5479 (8)0.4003 (5)0.0217 (13)
C3b0.3958 (8)0.6127 (8)0.3161 (5)0.0214 (13)
C4b0.6216 (8)0.8361 (8)0.2689 (5)0.0220 (13)
C5b0.7526 (8)0.9654 (8)0.2961 (5)0.0227 (14)
C6b0.8016 (9)1.0234 (8)0.3958 (5)0.0234 (14)
C7b0.7127 (8)0.9495 (8)0.4674 (5)0.0217 (13)
C8b0.5792 (8)0.8170 (8)0.4411 (5)0.0188 (13)
C9b0.5333 (8)0.7557 (8)0.3414 (5)0.0190 (13)
C10b0.1768 (9)0.4034 (8)0.3852 (5)0.0238 (14)
H1a0.44910.14990.28110.0265*
H2a0.67550.4349−0.06110.0290*
H3a0.99330.73020.14930.0243*
H4a0.2484−0.04060.05550.0300*
H1b0.30240.57690.54400.0264*
H2b0.59040.80060.20120.0264*
H3b0.89451.11200.41310.0281*
H4b0.14400.35360.31960.0286*
U11U22U33U12U13U23
Cl1a0.0338 (9)0.0277 (9)0.0216 (8)0.0044 (7)0.0053 (7)0.0088 (6)
Cl2a0.0312 (9)0.0231 (8)0.0166 (7)0.0037 (7)−0.0028 (6)−0.0007 (6)
Cl1b0.0345 (10)0.0287 (9)0.0246 (8)0.0034 (8)0.0082 (7)0.0071 (7)
Cl2b0.0311 (9)0.0232 (8)0.0171 (7)0.0031 (7)−0.0008 (6)−0.0016 (6)
O1a0.034 (3)0.019 (3)0.012 (2)0.0034 (19)0.0043 (18)0.0014 (16)
O2a0.035 (3)0.032 (3)0.014 (3)0.005 (3)−0.0023 (19)−0.0005 (18)
O3a0.037 (3)0.030 (3)0.023 (3)−0.005 (3)0.006 (2)0.002 (2)
O1b0.029 (3)0.021 (3)0.014 (2)0.0013 (19)0.0014 (18)0.0028 (17)
O2b0.035 (3)0.035 (3)0.014 (3)0.003 (3)−0.0017 (19)−0.0023 (19)
O3b0.036 (3)0.032 (3)0.025 (3)−0.007 (3)−0.002 (3)0.005 (2)
C1a0.025 (4)0.022 (4)0.020 (3)0.006 (3)0.001 (3)0.004 (3)
C2a0.020 (4)0.021 (3)0.018 (3)0.005 (3)0.003 (3)0.001 (3)
C3a0.026 (4)0.020 (3)0.019 (3)0.007 (3)−0.001 (3)−0.001 (3)
C4a0.033 (4)0.025 (4)0.013 (3)0.003 (3)0.003 (3)0.004 (3)
C5a0.028 (4)0.019 (3)0.017 (3)0.010 (3)0.007 (3)0.006 (3)
C6a0.025 (4)0.017 (3)0.019 (3)0.004 (3)0.003 (3)0.002 (3)
C7a0.025 (4)0.020 (3)0.014 (3)0.006 (3)−0.001 (3)−0.001 (3)
C8a0.024 (4)0.019 (3)0.017 (3)0.004 (3)0.002 (3)0.004 (3)
C9a0.030 (4)0.018 (3)0.015 (3)0.009 (3)0.002 (3)0.001 (3)
C10a0.030 (4)0.019 (3)0.024 (4)0.004 (3)−0.002 (3)−0.001 (3)
C1b0.027 (4)0.019 (3)0.021 (3)0.006 (3)0.004 (3)0.002 (3)
C2b0.023 (4)0.025 (4)0.018 (3)0.007 (3)−0.001 (3)0.002 (3)
C3b0.028 (4)0.022 (4)0.017 (3)0.011 (3)−0.000 (3)0.002 (3)
C4b0.027 (4)0.021 (3)0.018 (3)0.004 (3)0.004 (3)0.002 (3)
C5b0.028 (4)0.023 (4)0.022 (4)0.012 (3)0.006 (3)0.008 (3)
C6b0.027 (4)0.020 (4)0.022 (4)0.004 (3)−0.003 (3)0.001 (3)
C7b0.026 (4)0.024 (4)0.016 (3)0.010 (3)−0.000 (3)0.001 (3)
C8b0.023 (4)0.024 (4)0.014 (3)0.013 (3)0.005 (3)0.006 (3)
C9b0.020 (3)0.023 (3)0.017 (3)0.013 (3)0.000 (3)0.003 (3)
C10b0.031 (4)0.019 (3)0.020 (3)0.004 (3)0.004 (3)0.000 (3)
Cl1a—C5a1.740 (7)C7a—C8a1.398 (8)
Cl2a—C7a1.735 (6)C8a—C9a1.401 (9)
Cl1b—C5b1.733 (7)C1b—C2b1.338 (9)
Cl2b—C7b1.723 (6)C2b—C3b1.464 (9)
O1a—C1a1.344 (7)C2b—C10b1.458 (9)
O1a—C8a1.381 (8)C3b—C9b1.465 (8)
O2a—C3a1.229 (8)C4b—C5b1.367 (9)
O3a—C10a1.210 (9)C4b—C9b1.405 (9)
O1b—C1b1.363 (7)C5b—C6b1.411 (9)
O1b—C8b1.379 (8)C6b—C7b1.376 (10)
O2b—C3b1.233 (7)C7b—C8b1.393 (8)
O3b—C10b1.227 (9)C8b—C9b1.412 (8)
C1a—C2a1.356 (9)C1a—H1a0.950
C2a—C3a1.467 (9)C4a—H2a0.950
C2a—C10a1.490 (9)C6a—H3a0.950
C3a—C9a1.459 (9)C10a—H4a0.950
C4a—C5a1.355 (9)C1b—H1b0.950
C4a—C9a1.416 (9)C4b—H2b0.950
C5a—C6a1.401 (9)C6b—H3b0.950
C6a—C7a1.373 (9)C10b—H4b0.950
C1a—O1a—C8a118.3 (5)C5b—C4b—C9b119.9 (6)
C1b—O1b—C8b118.1 (5)Cl1b—C5b—C4b120.6 (5)
O1a—C1a—C2a124.6 (6)Cl1b—C5b—C6b117.6 (5)
C1a—C2a—C3a120.4 (6)C4b—C5b—C6b121.9 (6)
C1a—C2a—C10a118.9 (6)C5b—C6b—C7b118.9 (6)
C3a—C2a—C10a120.7 (6)Cl2b—C7b—C6b120.4 (5)
O2a—C3a—C2a122.6 (6)Cl2b—C7b—C8b119.6 (5)
O2a—C3a—C9a122.9 (6)C6b—C7b—C8b120.0 (6)
C2a—C3a—C9a114.5 (5)O1b—C8b—C7b117.3 (5)
C5a—C4a—C9a119.4 (6)O1b—C8b—C9b121.6 (5)
Cl1a—C5a—C4a120.3 (5)C7b—C8b—C9b121.1 (6)
Cl1a—C5a—C6a117.0 (5)C3b—C9b—C4b121.9 (6)
C4a—C5a—C6a122.7 (6)C3b—C9b—C8b119.8 (6)
C5a—C6a—C7a118.3 (6)C4b—C9b—C8b118.2 (5)
Cl2a—C7a—C6a120.3 (5)O3b—C10b—C2b123.8 (6)
Cl2a—C7a—C8a119.0 (5)O1a—C1a—H1a117.700
C6a—C7a—C8a120.6 (6)C2a—C1a—H1a117.702
O1a—C8a—C7a117.4 (5)C5a—C4a—H2a120.314
O1a—C8a—C9a122.2 (5)C9a—C4a—H2a120.307
C7a—C8a—C9a120.4 (6)C5a—C6a—H3a120.850
C3a—C9a—C4a121.6 (6)C7a—C6a—H3a120.844
C3a—C9a—C8a119.9 (6)O3a—C10a—H4a118.481
C4a—C9a—C8a118.5 (6)C2a—C10a—H4a118.489
O3a—C10a—C2a123.0 (6)O1b—C1b—H1b117.382
O1b—C1b—C2b125.2 (6)C2b—C1b—H1b117.374
C1b—C2b—C3b120.2 (6)C5b—C4b—H2b120.070
C1b—C2b—C10b119.4 (6)C9b—C4b—H2b120.068
C3b—C2b—C10b120.3 (6)C5b—C6b—H3b120.568
O2b—C3b—C2b122.6 (6)C7b—C6b—H3b120.567
O2b—C3b—C9b122.5 (6)O3b—C10b—H4b118.104
C2b—C3b—C9b114.9 (5)C2b—C10b—H4b118.102
C1a—O1a—C8a—C7a−178.8 (6)O1a—C8a—C9a—C3a−1.4 (10)
C1a—O1a—C8a—C9a−0.7 (9)O1a—C8a—C9a—C4a178.7 (6)
C8a—O1a—C1a—C2a1.9 (10)C7a—C8a—C9a—C3a176.7 (6)
C8a—O1a—C1a—H1a−178.1C7a—C8a—C9a—C4a−3.2 (10)
C1b—O1b—C8b—C7b180.0 (6)O1b—C1b—C2b—C3b−2.9 (11)
C1b—O1b—C8b—C9b0.3 (9)O1b—C1b—C2b—C10b176.3 (6)
C8b—O1b—C1b—C2b2.5 (10)H1b—C1b—C2b—C3b177.1
C8b—O1b—C1b—H1b−177.5H1b—C1b—C2b—C10b−3.7
O1a—C1a—C2a—C3a−1.0 (11)C1b—C2b—C3b—O2b178.7 (7)
O1a—C1a—C2a—C10a178.3 (6)C1b—C2b—C3b—C9b0.7 (10)
H1a—C1a—C2a—C3a179.0C1b—C2b—C10b—O3b0.7 (11)
H1a—C1a—C2a—C10a−1.7C1b—C2b—C10b—H4b−179.3
C1a—C2a—C3a—O2a178.4 (7)C3b—C2b—C10b—O3b179.9 (7)
C1a—C2a—C3a—C9a−1.1 (10)C3b—C2b—C10b—H4b−0.1
C1a—C2a—C10a—O3a−2.4 (11)C10b—C2b—C3b—O2b−0.4 (11)
C1a—C2a—C10a—H4a177.6C10b—C2b—C3b—C9b−178.5 (6)
C3a—C2a—C10a—O3a176.9 (7)O2b—C3b—C9b—C4b4.2 (11)
C3a—C2a—C10a—H4a−3.1O2b—C3b—C9b—C8b−176.2 (6)
C10a—C2a—C3a—O2a−0.9 (11)C2b—C3b—C9b—C4b−177.7 (6)
C10a—C2a—C3a—C9a179.7 (6)C2b—C3b—C9b—C8b1.8 (9)
O2a—C3a—C9a—C4a2.6 (11)C5b—C4b—C9b—C3b−177.7 (6)
O2a—C3a—C9a—C8a−177.3 (6)C5b—C4b—C9b—C8b2.7 (10)
C2a—C3a—C9a—C4a−178.0 (6)C9b—C4b—C5b—Cl1b178.8 (6)
C2a—C3a—C9a—C8a2.2 (10)C9b—C4b—C5b—C6b−0.9 (11)
C5a—C4a—C9a—C3a−179.4 (6)H2b—C4b—C5b—Cl1b−1.2
C5a—C4a—C9a—C8a0.5 (11)H2b—C4b—C5b—C6b179.1
C9a—C4a—C5a—Cl1a−177.7 (6)H2b—C4b—C9b—C3b2.3
C9a—C4a—C5a—C6a2.5 (11)H2b—C4b—C9b—C8b−177.3
H2a—C4a—C5a—Cl1a2.3Cl1b—C5b—C6b—C7b179.0 (5)
H2a—C4a—C5a—C6a−177.5Cl1b—C5b—C6b—H3b−1.0
H2a—C4a—C9a—C3a0.6C4b—C5b—C6b—C7b−1.3 (11)
H2a—C4a—C9a—C8a−179.5C4b—C5b—C6b—H3b178.6
Cl1a—C5a—C6a—C7a177.5 (5)C5b—C6b—C7b—Cl2b−179.1 (6)
Cl1a—C5a—C6a—H3a−2.5C5b—C6b—C7b—C8b1.6 (11)
C4a—C5a—C6a—C7a−2.7 (11)H3b—C6b—C7b—Cl2b0.9
C4a—C5a—C6a—H3a177.3H3b—C6b—C7b—C8b−178.4
C5a—C6a—C7a—Cl2a−178.6 (6)Cl2b—C7b—C8b—O1b1.3 (9)
C5a—C6a—C7a—C8a−0.1 (10)Cl2b—C7b—C8b—C9b−179.0 (5)
H3a—C6a—C7a—Cl2a1.4C6b—C7b—C8b—O1b−179.3 (6)
H3a—C6a—C7a—C8a179.9C6b—C7b—C8b—C9b0.3 (11)
Cl2a—C7a—C8a—O1a−0.3 (9)O1b—C8b—C9b—C3b−2.4 (10)
Cl2a—C7a—C8a—C9a−178.5 (5)O1b—C8b—C9b—C4b177.2 (6)
C6a—C7a—C8a—O1a−178.8 (6)C7b—C8b—C9b—C3b178.0 (6)
C6a—C7a—C8a—C9a3.0 (10)C7b—C8b—C9b—C4b−2.5 (10)
D—H···AD—HH···AD···AD—H···A
C4bi—H2bi···O2a0.952.353.246 (8)157
C4a—H2a···O2bi0.952.353.259 (8)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4b i—H2b i⋯O2a 0.952.353.246 (8)157
C4a—H2a⋯O2b i 0.952.353.259 (8)160

Symmetry code: (i) .

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Authors:  Yi Sup Shim; Ki Chul Kim; Dae Yoon Chi; Keun-Hyeung Lee; Hyeongjin Cho
Journal:  Bioorg Med Chem Lett       Date:  2003-08-04       Impact factor: 2.823

8.  3-[(E)-(Benzyl-iminiumyl)meth-yl]-6,8-di-chloro-2H-chromen-4-olate.

Authors:  Yoshinobu Ishikawa; Yuya Motohashi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-10

9.  (E)-6,8-Di-chloro-3-{[(naphthalen-1-ylmeth-yl)iminiumyl]meth-yl}-2H-chromen-4-olate.

Authors:  Yoshinobu Ishikawa; Yuya Motohashi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-10
  9 in total
  14 in total

1.  Crystal structure of 7,8-di-chloro-4-oxo-4H-chromene-3-carbaldehyde.

Authors:  Yoshinobu Ishikawa
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-07-08

2.  Crystal structure of 6,7-di-chloro-4-oxo-4H-chromene-3-carbaldehyde.

Authors:  Yoshinobu Ishikawa
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-08-12

3.  6-Chloro-8-nitro-4-oxo-4H-chromene-3-carbaldehyde.

Authors:  Yoshinobu Ishikawa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-12

4.  6-Chloro-4-oxo-4H-chromene-3-carb-aldehyde.

Authors:  Yoshinobu Ishikawa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-05

5.  6,8-Di-iodo-4-oxo-4H-chromene-3-carbalde-hyde.

Authors:  Yoshinobu Ishikawa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-12

6.  6-Bromo-4-oxo-4H-chromene-3-carb-alde-hyde.

Authors:  Yoshinobu Ishikawa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-16

7.  Crystal structure of (3,5-di-chloro-2-hy-droxy-phen-yl){1-[(naphthalen-1-yl)carbon-yl]-1H-pyrazol-4-yl}methanone.

Authors:  Yoshinobu Ishikawa; Yuya Motohashi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-11-19

8.  6,8-Di-bromo-4-oxo-4H-chromene-3-carbaldehyde.

Authors:  Yoshinobu Ishikawa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-15

9.  8-Chloro-4-oxo-4H-chromene-3-carbaldehyde.

Authors:  Yoshinobu Ishikawa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-06-04

10.  6-Chloro-7-fluoro-4-oxo-4H-chromene-3-carbaldehyde.

Authors:  Yoshinobu Ishikawa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-06-25
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