| Literature DB >> 26396751 |
Abstract
In the title compound, C10H4Cl2O3, a dichlorinated 3-formyl-chromone derivative, the fused-ring system is slightly puckered [dihedral angle between the benzene and pyran rings = 3.66 (10)°]. The dihedral angle between the pyran ring and the formyl plane is 8.64 (7)°. In the crystal, mol-ecules are linked through π-π stacking inter-actions [centroid-centroid distance between the benzene and pyran rings = 3.727 (2) Å], C-H⋯O hydrogen bonds and short C⋯O contacts [2.838 (4) Å]. Halogen bonds between the formyl O atoms and the Cl atoms at the 7-position [Cl⋯O = 2.984 (3) Å, C-Cl⋯O = 170.83 (12)° and Cl⋯O-C = 116.05 (19)°] are also formed along the a axis, resulting in helical structures constructed by C-H⋯O hydrogen bonds and Cl⋯O halogen bonds along the b axis. In addition, type II halogen-halogen contacts between the chlorine atoms at the 7- and 8-positions [Cl⋯Cl = 3.519 (2) Å, C-Cl⋯Cl = 171.24 (10)° and 88.74 (11)°] are observed.Entities:
Keywords: crystal structure; halogen bond; halogen–halogen interaction; hydrogen bond; π–π stacking
Year: 2015 PMID: 26396751 PMCID: PMC4571352 DOI: 10.1107/S205698901501275X
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Sphere models of the crystal structures of (a) 7-chloro-4-oxo-4H-chromene-3-carbaldehyde (Ishikawa, 2014b ▸), (b) 8-chloro-4-oxo-4H-chromene-3-carbaldehyde (Ishikawa, 2014a ▸), (c) 6,8-dichloro-4-oxochromene-3-carbaldehyde (Ishikawa & Motohashi, 2013 ▸) and (d) the title compound.
Figure 2The molecular structure of the title compound, with displacement ellipsoids drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius.
Figure 3A packing view of the title compound. C—H⋯O hydrogen bonds and Cl⋯O halogen bonds are represented as dashed lines.
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| C1H1O2i | 0.95 | 2.28 | 3.113(4) | 146(1) |
| C4H2O3ii | 0.95 | 2.47 | 3.398(4) | 167(1) |
| C6Cl1O3iii | 1.72(1) | 2.98(1) | 4.693(4) | 171(1) |
| C10O3Cl1iv | 1.21(1) | 2.98(1) | 3.678(4) | 116(1) |
| C6Cl1Cl2v | 1.72(1) | 3.52(1) | 3.884(4) | 89(1) |
| C7Cl2Cl1vi | 1.72(1) | 3.52(1) | 5.229(4) | 171(1) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .
Figure 4A helical structure constructed by C—H⋯O hydrogen bonds and Cl⋯O halogen bonds in the crystal packing.
Experimental details
| Crystal data | |
| Chemical formula | C10H4Cl2O3 |
|
| 243.05 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 100 |
|
| 23.091(7), 3.7704(18), 10.729(5) |
|
| 934.1(7) |
|
| 4 |
| Radiation type | Mo |
| (mm1) | 0.67 |
| Crystal size (mm) | 0.41 0.12 0.05 |
| Data collection | |
| Diffractometer | Rigaku AFC7R |
| No. of measured, independent and observed [ | 1571, 1291, 1155 |
|
| 0.015 |
| (sin /)max (1) | 0.650 |
| Refinement | |
|
| 0.025, 0.057, 1.05 |
| No. of reflections | 1291 |
| No. of parameters | 136 |
| No. of restraints | 1 |
| H-atom treatment | H-atom parameters constrained |
| max, min (e 3) | 0.24, 0.27 |
| Absolute structure | Flack (1983 |
| Absolute structure parameter | 0.06(8) |
Computer programs: WinAFC Diffractometer Control Software (Rigaku, 1999 ▸), SIR2008 (Burla et al., 2007 ▸), SHELXL97 (Sheldrick, 2008 ▸) and CrystalStructure (Rigaku, 2010 ▸).
| C10H4Cl2O3 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2ac | Cell parameters from 22 reflections |
| θ = 15.8–17.3° | |
| µ = 0.67 mm−1 | |
| Plate, yellow | |
| 0.41 × 0.12 × 0.05 mm |
| Rigaku AFC–7R diffractometer | θmax = 27.5° |
| ω scans | |
| 1571 measured reflections | |
| 1291 independent reflections | |
| 1155 reflections with | 3 standard reflections every 150 reflections |
| intensity decay: 1.1% |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 1291 reflections | Δρmax = 0.24 e Å−3 |
| 136 parameters | Δρmin = −0.27 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 169 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.06 (8) |
| Secondary atom site location: difference Fourier map |
| Refinement. Refinement was performed using all reflections. The weighted |
| Cl1 | −0.02754 (3) | 0.3441 (2) | 0.16617 (7) | 0.02008 (17) | |
| Cl2 | 0.05650 (3) | −0.0003 (3) | −0.03533 (8) | 0.01821 (16) | |
| O1 | 0.17307 (8) | −0.0690 (6) | 0.04845 (18) | 0.0137 (5) | |
| O2 | 0.24923 (9) | 0.3154 (5) | 0.36500 (17) | 0.0179 (5) | |
| O3 | 0.34477 (9) | −0.3040 (6) | 0.12579 (19) | 0.0254 (6) | |
| C1 | 0.22935 (12) | −0.1270 (8) | 0.0740 (3) | 0.0136 (7) | |
| C2 | 0.25652 (12) | −0.0155 (7) | 0.1782 (3) | 0.0140 (6) | |
| C3 | 0.22568 (13) | 0.1862 (9) | 0.2724 (3) | 0.0149 (7) | |
| C4 | 0.12566 (13) | 0.3790 (8) | 0.3362 (3) | 0.0156 (7) | |
| C5 | 0.06756 (13) | 0.4108 (8) | 0.3106 (3) | 0.0169 (7) | |
| C6 | 0.04536 (12) | 0.2967 (8) | 0.1961 (3) | 0.0156 (7) | |
| C7 | 0.08124 (12) | 0.1435 (8) | 0.1075 (3) | 0.0132 (7) | |
| C8 | 0.16288 (12) | 0.2231 (8) | 0.2485 (3) | 0.0116 (7) | |
| C9 | 0.13996 (12) | 0.1023 (8) | 0.1362 (3) | 0.0127 (7) | |
| C10 | 0.31843 (13) | −0.1099 (9) | 0.1950 (3) | 0.0195 (7) | |
| H1 | 0.2515 | −0.2554 | 0.0145 | 0.0163* | |
| H2 | 0.1406 | 0.4626 | 0.4133 | 0.0187* | |
| H3 | 0.0423 | 0.5109 | 0.3710 | 0.0203* | |
| H4 | 0.3385 | −0.0119 | 0.2642 | 0.0233* |
| Cl1 | 0.0144 (3) | 0.0234 (4) | 0.0224 (4) | 0.0021 (3) | 0.0007 (4) | 0.0024 (4) |
| Cl2 | 0.0181 (3) | 0.0216 (4) | 0.0149 (3) | −0.0005 (4) | −0.0043 (4) | −0.0019 (4) |
| O1 | 0.0147 (10) | 0.0162 (12) | 0.0102 (10) | 0.0015 (9) | −0.0001 (9) | −0.0031 (9) |
| O2 | 0.0218 (10) | 0.0199 (11) | 0.0122 (11) | −0.0014 (10) | −0.0039 (10) | −0.0028 (11) |
| O3 | 0.0199 (12) | 0.0330 (14) | 0.0233 (13) | 0.0064 (11) | −0.0001 (9) | −0.0089 (12) |
| C1 | 0.0154 (13) | 0.0113 (16) | 0.0140 (15) | 0.0000 (12) | 0.0013 (13) | 0.0014 (13) |
| C2 | 0.0152 (14) | 0.0118 (14) | 0.0148 (15) | 0.0014 (11) | 0.0005 (13) | 0.0027 (16) |
| C3 | 0.0214 (15) | 0.0128 (16) | 0.0106 (14) | −0.0016 (13) | −0.0019 (13) | 0.0040 (14) |
| C4 | 0.0224 (15) | 0.0113 (16) | 0.0130 (16) | −0.0017 (13) | 0.0003 (13) | −0.0023 (13) |
| C5 | 0.0209 (15) | 0.0161 (18) | 0.0137 (15) | −0.0012 (14) | 0.0064 (13) | −0.0008 (13) |
| C6 | 0.0148 (13) | 0.0111 (15) | 0.0208 (18) | 0.0000 (12) | 0.0011 (12) | 0.0024 (14) |
| C7 | 0.0152 (14) | 0.0106 (15) | 0.0139 (15) | −0.0045 (13) | −0.0033 (12) | 0.0026 (13) |
| C8 | 0.0149 (14) | 0.0112 (16) | 0.0087 (14) | −0.0025 (12) | −0.0002 (12) | −0.0002 (12) |
| C9 | 0.0193 (14) | 0.0093 (14) | 0.0095 (14) | 0.0016 (12) | 0.0030 (12) | 0.0016 (12) |
| C10 | 0.0209 (15) | 0.0208 (17) | 0.0166 (16) | 0.0003 (14) | 0.0012 (13) | −0.0017 (14) |
| Cl1—C6 | 1.723 (3) | C4—C5 | 1.375 (5) |
| Cl2—C7 | 1.723 (3) | C4—C8 | 1.403 (4) |
| O1—C1 | 1.346 (4) | C5—C6 | 1.399 (5) |
| O1—C9 | 1.374 (4) | C6—C7 | 1.387 (4) |
| O2—C3 | 1.233 (4) | C7—C9 | 1.399 (4) |
| O3—C10 | 1.207 (4) | C8—C9 | 1.393 (4) |
| C1—C2 | 1.349 (5) | C1—H1 | 0.950 |
| C2—C3 | 1.452 (4) | C4—H2 | 0.950 |
| C2—C10 | 1.484 (5) | C5—H3 | 0.950 |
| C3—C8 | 1.479 (4) | C10—H4 | 0.950 |
| Cl1···Cl2 | 3.1821 (13) | Cl1···H3 | 2.7981 |
| Cl2···O1 | 2.850 (3) | O2···H2 | 2.6203 |
| O1···C3 | 2.860 (4) | O2···H4 | 2.6344 |
| O2···C1 | 3.570 (4) | O3···H1 | 2.4697 |
| O2···C4 | 2.880 (4) | C1···H4 | 3.2719 |
| O2···C10 | 2.907 (4) | C3···H1 | 3.2841 |
| O3···C1 | 2.803 (4) | C3···H2 | 2.6882 |
| C1···C7 | 3.587 (4) | C3···H4 | 2.7113 |
| C1···C8 | 2.758 (5) | C6···H2 | 3.2648 |
| C2···C9 | 2.765 (4) | C7···H3 | 3.2742 |
| C4···C7 | 2.803 (4) | C8···H3 | 3.2642 |
| C5···C9 | 2.766 (4) | C9···H1 | 3.1865 |
| C6···C8 | 2.785 (4) | C9···H2 | 3.2686 |
| Cl1···Cl2i | 3.5191 (17) | C10···H1 | 2.5378 |
| Cl1···O3ii | 2.984 (3) | H1···H4 | 3.4723 |
| Cl2···Cl1iii | 3.5191 (17) | H2···H3 | 2.3217 |
| O1···O2iv | 3.533 (3) | Cl1···H3xi | 3.2315 |
| O1···O2v | 3.032 (3) | Cl1···H4ii | 3.4992 |
| O1···C8vi | 3.434 (4) | Cl2···H3iii | 3.1499 |
| O1···C9vi | 3.352 (4) | Cl2···H3xi | 3.1018 |
| O2···O1vii | 3.032 (3) | Cl2···H4v | 3.2415 |
| O2···O1viii | 3.533 (3) | O1···H1ix | 3.5807 |
| O2···C1vii | 2.838 (4) | O1···H4v | 3.0689 |
| O2···C1viii | 3.113 (4) | O2···H1vii | 2.6840 |
| O2···C2ix | 3.227 (4) | O2···H1viii | 2.2789 |
| O2···C2vii | 3.586 (4) | O2···H4ix | 3.4425 |
| O2···C3ix | 3.473 (4) | O3···H2iv | 2.4674 |
| O2···C10ix | 3.252 (4) | O3···H4vi | 3.0577 |
| O3···Cl1x | 2.984 (3) | C1···H1ix | 3.3865 |
| O3···C2vi | 3.415 (4) | C2···H1ix | 3.3630 |
| O3···C4iv | 3.398 (4) | C3···H1ix | 3.5280 |
| O3···C10vi | 3.186 (5) | C3···H1vii | 3.1298 |
| C1···O2iv | 3.113 (4) | C3···H1viii | 3.3849 |
| C1···O2v | 2.838 (4) | C4···H2vi | 3.5694 |
| C1···C2vi | 3.587 (5) | C5···H3vi | 3.5033 |
| C1···C3vi | 3.354 (5) | C6···H3vi | 3.5082 |
| C1···C3v | 3.597 (5) | C8···H2vi | 3.4070 |
| C1···C8vi | 3.445 (5) | C10···H2iv | 3.5538 |
| C2···O2vi | 3.227 (4) | C10···H4vi | 3.5117 |
| C2···O2v | 3.586 (4) | H1···O1vi | 3.5807 |
| C2···O3ix | 3.415 (4) | H1···O2iv | 2.2789 |
| C2···C1ix | 3.587 (5) | H1···O2v | 2.6840 |
| C2···C3vi | 3.254 (5) | H1···C1vi | 3.3865 |
| C3···O2vi | 3.473 (4) | H1···C2vi | 3.3630 |
| C3···C1ix | 3.354 (5) | H1···C3vi | 3.5280 |
| C3···C1vii | 3.597 (5) | H1···C3iv | 3.3849 |
| C3···C2ix | 3.254 (5) | H1···C3v | 3.1298 |
| C3···C10ix | 3.510 (5) | H1···H2iv | 2.9187 |
| C4···O3viii | 3.398 (4) | H1···H4v | 3.5172 |
| C4···C8ix | 3.428 (5) | H2···O3viii | 2.4674 |
| C4···C9ix | 3.486 (4) | H2···C4ix | 3.5694 |
| C5···C6ix | 3.596 (5) | H2···C8ix | 3.4070 |
| C5···C7ix | 3.532 (5) | H2···C10viii | 3.5538 |
| C6···C5vi | 3.596 (5) | H2···H1viii | 2.9187 |
| C6···C7ix | 3.432 (5) | H3···Cl1xii | 3.2315 |
| C7···C5vi | 3.532 (5) | H3···Cl2i | 3.1499 |
| C7···C6vi | 3.432 (5) | H3···Cl2xii | 3.1018 |
| C8···O1ix | 3.434 (4) | H3···C5ix | 3.5033 |
| C8···C1ix | 3.445 (5) | H3···C6ix | 3.5082 |
| C8···C4vi | 3.428 (5) | H4···Cl1x | 3.4992 |
| C8···C9ix | 3.567 (5) | H4···Cl2vii | 3.2415 |
| C9···O1ix | 3.352 (4) | H4···O1vii | 3.0689 |
| C9···C4vi | 3.486 (4) | H4···O2vi | 3.4425 |
| C9···C8vi | 3.567 (5) | H4···O3ix | 3.0577 |
| C10···O2vi | 3.252 (4) | H4···C10ix | 3.5117 |
| C10···O3ix | 3.186 (5) | H4···H1vii | 3.5172 |
| C10···C3vi | 3.510 (5) | ||
| C1—O1—C9 | 118.3 (3) | C3—C8—C4 | 121.6 (3) |
| O1—C1—C2 | 124.5 (3) | C3—C8—C9 | 119.5 (3) |
| C1—C2—C3 | 120.8 (3) | C4—C8—C9 | 119.0 (3) |
| C1—C2—C10 | 118.3 (3) | O1—C9—C7 | 116.2 (3) |
| C3—C2—C10 | 120.9 (3) | O1—C9—C8 | 122.3 (3) |
| O2—C3—C2 | 123.5 (3) | C7—C9—C8 | 121.5 (3) |
| O2—C3—C8 | 122.4 (3) | O3—C10—C2 | 123.8 (3) |
| C2—C3—C8 | 114.2 (3) | O1—C1—H1 | 117.736 |
| C5—C4—C8 | 120.0 (3) | C2—C1—H1 | 117.719 |
| C4—C5—C6 | 120.4 (3) | C5—C4—H2 | 119.983 |
| Cl1—C6—C5 | 119.3 (3) | C8—C4—H2 | 119.980 |
| Cl1—C6—C7 | 120.0 (3) | C4—C5—H3 | 119.801 |
| C5—C6—C7 | 120.7 (3) | C6—C5—H3 | 119.790 |
| Cl2—C7—C6 | 122.8 (3) | O3—C10—H4 | 118.100 |
| Cl2—C7—C9 | 118.8 (2) | C2—C10—H4 | 118.125 |
| C6—C7—C9 | 118.3 (3) | ||
| C1—O1—C9—C7 | −177.5 (3) | C8—C4—C5—C6 | −1.6 (5) |
| C1—O1—C9—C8 | 1.3 (4) | C8—C4—C5—H3 | 178.4 |
| C9—O1—C1—C2 | −2.9 (4) | H2—C4—C5—C6 | 178.4 |
| C9—O1—C1—H1 | 177.1 | H2—C4—C5—H3 | −1.6 |
| O1—C1—C2—C3 | −0.8 (5) | H2—C4—C8—C3 | −0.4 |
| O1—C1—C2—C10 | 178.1 (3) | H2—C4—C8—C9 | 180.0 |
| H1—C1—C2—C3 | 179.2 | C4—C5—C6—Cl1 | −179.4 (3) |
| H1—C1—C2—C10 | −1.9 | C4—C5—C6—C7 | 1.3 (5) |
| C1—C2—C3—O2 | −174.8 (3) | H3—C5—C6—Cl1 | 0.6 |
| C1—C2—C3—C8 | 5.5 (4) | H3—C5—C6—C7 | −178.7 |
| C1—C2—C10—O3 | −6.0 (5) | Cl1—C6—C7—Cl2 | 1.0 (4) |
| C1—C2—C10—H4 | 173.9 | Cl1—C6—C7—C9 | −178.62 (18) |
| C3—C2—C10—O3 | 172.8 (3) | C5—C6—C7—Cl2 | −179.7 (3) |
| C3—C2—C10—H4 | −7.2 | C5—C6—C7—C9 | 0.7 (5) |
| C10—C2—C3—O2 | 6.3 (5) | Cl2—C7—C9—O1 | −3.2 (4) |
| C10—C2—C3—C8 | −173.4 (3) | Cl2—C7—C9—C8 | 178.01 (18) |
| O2—C3—C8—C4 | −6.1 (5) | C6—C7—C9—O1 | 176.4 (3) |
| O2—C3—C8—C9 | 173.5 (3) | C6—C7—C9—C8 | −2.4 (4) |
| C2—C3—C8—C4 | 173.6 (3) | C3—C8—C9—O1 | 3.7 (4) |
| C2—C3—C8—C9 | −6.8 (4) | C3—C8—C9—C7 | −177.6 (3) |
| C5—C4—C8—C3 | 179.6 (3) | C4—C8—C9—O1 | −176.7 (3) |
| C5—C4—C8—C9 | 0.0 (4) | C4—C8—C9—C7 | 2.0 (4) |
| H··· | ||||
| C1—H1···O2iv | 0.95 | 2.28 | 3.113 (4) | 146 (1) |
| C4—H2···O3viii | 0.95 | 2.47 | 3.398 (4) | 167 (1) |
| C6—Cl1···O3ii | 1.72 (1) | 2.98 (1) | 4.693 (4) | 171 (1) |
| C10—O3···Cl1x | 1.21 (1) | 2.98 (1) | 3.678 (4) | 116 (1) |
| C6—Cl1···Cl2i | 1.72 (1) | 3.52 (1) | 3.884 (4) | 89 (1) |
| C7—Cl2···Cl1iii | 1.72 (1) | 3.52 (1) | 5.229 (4) | 171 (1) |