Literature DB >> 24427029

(2E,4E)-Ethyl 5-(2,4-di-chloro-phenyl-sulfon-yl)penta-2,4-dienoate.

U Sankar1, V Sabari2, S Mahalakshmi1, K K Balasubramanian3, S Aravindhan2.   

Abstract

In the title compound, C13H12Cl2O4S, both C=C double bonds adopt an E conformation. The S atom has a distorted tetra-hedral geometry with bond angles ranging from 103.03 (12) to 118.12 (13)°. The eth-oxy-carbonyl group is disordered over two sets of sites, with site-occupancy factors of 0.739 (11) and 0.261 (11). In the crystal, C-H⋯O inter-actions link the mol-ecules into chains mol-ecules running parallel to the a axis.

Entities:  

Year:  2013        PMID: 24427029      PMCID: PMC3884450          DOI: 10.1107/S1600536813021429

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of phenyl­sulfonyl-containing compounds, see: De Benedetti et al. (1985 ▶). For related structures, see: Li (2011 ▶); Sankar et al. (2012 ▶); Chakkaravarthi et al. (2008 ▶); Rodriguez et al. (1995 ▶).

Experimental

Crystal data

C13H12Cl2O4S M = 335.19 Monoclinic, a = 5.773 (5) Å b = 9.939 (5) Å c = 13.268 (5) Å β = 95.876 (5)° V = 757.3 (8) Å3 Z = 2 Mo Kα radiation μ = 0.57 mm−1 T = 293 K 0.30 × 0.30 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.824, T max = 0.847 6848 measured reflections 2471 independent reflections 2314 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.074 S = 1.06 2471 reflections 209 parameters 74 restraints H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 1054 Friedel pairs Absolute structure parameter: 0.04 (6) Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813021429/pv2638sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813021429/pv2638Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813021429/pv2638Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H12Cl2O4SF(000) = 344
Mr = 335.19Dx = 1.470 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 8834 reflections
a = 5.773 (5) Åθ = 2.1–31.2°
b = 9.939 (5) ŵ = 0.57 mm1
c = 13.268 (5) ÅT = 293 K
β = 95.876 (5)°Block, colourless
V = 757.3 (8) Å30.30 × 0.30 × 0.20 mm
Z = 2
Bruker Kappa APEXII CCD diffractometer2471 independent reflections
Radiation source: fine-focus sealed tube2314 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
ω and φ scanθmax = 25.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −6→6
Tmin = 0.824, Tmax = 0.847k = −11→8
6848 measured reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H-atom parameters constrained
wR(F2) = 0.074w = 1/[σ2(Fo2) + (0.0288P)2 + 0.2277P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2471 reflectionsΔρmax = 0.24 e Å3
209 parametersΔρmin = −0.21 e Å3
74 restraintsAbsolute structure: Flack (1983), 1054 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.04 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.5395 (4)0.2357 (3)0.6203 (2)0.0521 (6)
C20.5786 (6)0.1770 (3)0.7135 (2)0.0667 (8)
H20.70970.19910.75710.080*
C30.4218 (6)0.0853 (4)0.7415 (2)0.0741 (9)
C40.2235 (6)0.0511 (3)0.6808 (2)0.0714 (8)
H40.1171−0.00970.70280.086*
C50.1869 (5)0.1095 (3)0.5862 (2)0.0597 (7)
H50.05610.08590.54300.072*
C60.3436 (4)0.2036 (3)0.5546 (2)0.0486 (6)
C70.5117 (4)0.2097 (3)0.3680 (2)0.0530 (6)
H70.66350.23870.38580.064*
C80.4707 (4)0.1217 (3)0.2951 (2)0.0518 (6)
H80.31720.09810.27470.062*
C90.6546 (4)0.0595 (3)0.24492 (19)0.0536 (6)
H90.80720.08470.26560.064*
C100.6203 (5)−0.0303 (3)0.1722 (2)0.0577 (7)
H100.4687−0.05340.14780.069*
C110.8169 (6)−0.0953 (4)0.1282 (2)0.0722 (9)
O10.0716 (3)0.2181 (2)0.38846 (15)0.0669 (6)
O20.3050 (4)0.4175 (2)0.43995 (17)0.0713 (6)
O31.0171 (4)−0.0764 (4)0.1560 (2)0.1189 (12)
Cl10.4769 (3)0.00684 (14)0.85912 (9)0.1250 (5)
Cl20.74573 (11)0.35013 (8)0.58707 (6)0.0671 (2)
S10.28638 (10)0.27417 (7)0.43281 (5)0.05173 (18)
O40.7333 (12)−0.1885 (7)0.0550 (6)0.0776 (16)0.739 (11)
C120.9044 (15)−0.2721 (8)0.0100 (6)0.103 (2)0.739 (11)
H12A1.0289−0.29630.06150.124*0.739 (11)
H12B0.8306−0.3543−0.01640.124*0.739 (11)
C130.9999 (15)−0.2001 (9)−0.0710 (7)0.137 (3)0.739 (11)
H13A1.1127−0.2556−0.09950.205*0.739 (11)
H13B1.0734−0.1190−0.04470.205*0.739 (11)
H13C0.8769−0.1779−0.12260.205*0.739 (11)
O4'0.777 (3)−0.1422 (19)0.0509 (18)0.079 (4)0.261 (11)
C12'0.966 (3)−0.205 (2)0.0030 (17)0.094 (5)0.261 (11)
H12C1.0634−0.25710.05250.113*0.261 (11)
H12D1.0614−0.1365−0.02440.113*0.261 (11)
C13'0.865 (4)−0.293 (2)−0.0783 (15)0.125 (7)0.261 (11)
H13D0.9866−0.3274−0.11520.188*0.261 (11)
H13E0.7566−0.2425−0.12330.188*0.261 (11)
H13F0.7854−0.3662−0.04980.188*0.261 (11)
U11U22U33U12U13U23
C10.0450 (13)0.0456 (16)0.0666 (17)0.0056 (10)0.0099 (11)−0.0127 (12)
C20.0668 (19)0.067 (2)0.0655 (19)0.0109 (16)0.0055 (15)−0.0085 (15)
C30.091 (2)0.067 (2)0.067 (2)0.020 (2)0.0172 (17)0.0022 (17)
C40.075 (2)0.0610 (19)0.084 (2)0.0022 (17)0.0347 (17)0.0024 (18)
C50.0443 (14)0.0577 (19)0.080 (2)−0.0016 (11)0.0208 (13)−0.0074 (15)
C60.0369 (12)0.0445 (14)0.0659 (16)0.0061 (11)0.0119 (11)−0.0089 (12)
C70.0330 (12)0.0651 (18)0.0621 (16)−0.0004 (11)0.0112 (11)−0.0003 (14)
C80.0345 (12)0.0667 (17)0.0549 (15)−0.0035 (11)0.0075 (11)0.0052 (13)
C90.0401 (12)0.0696 (18)0.0526 (14)0.0002 (14)0.0119 (10)0.0025 (15)
C100.0445 (14)0.0692 (19)0.0602 (16)0.0018 (12)0.0088 (12)0.0036 (15)
C110.0620 (19)0.096 (3)0.0594 (17)0.0193 (17)0.0110 (15)−0.0055 (17)
O10.0306 (8)0.0966 (16)0.0740 (13)0.0012 (9)0.0072 (8)−0.0091 (11)
O20.0631 (12)0.0541 (13)0.0978 (16)0.0121 (11)0.0133 (11)0.0071 (12)
O30.0513 (14)0.201 (3)0.1044 (19)0.0282 (17)0.0099 (13)−0.048 (2)
Cl10.1582 (11)0.1325 (11)0.0856 (7)0.0214 (8)0.0194 (7)0.0369 (6)
Cl20.0490 (4)0.0649 (4)0.0873 (5)−0.0096 (4)0.0072 (3)−0.0181 (4)
S10.0318 (3)0.0585 (4)0.0656 (4)0.0040 (3)0.0089 (2)−0.0020 (4)
O40.079 (3)0.069 (4)0.088 (2)−0.002 (2)0.024 (2)−0.027 (3)
C120.120 (5)0.084 (5)0.111 (5)0.001 (4)0.036 (4)−0.033 (4)
C130.148 (7)0.119 (7)0.157 (7)0.014 (5)0.081 (6)−0.010 (5)
O4'0.084 (8)0.062 (9)0.090 (7)−0.001 (6)0.004 (6)−0.031 (7)
C12'0.105 (9)0.089 (10)0.095 (8)−0.003 (8)0.041 (8)−0.039 (8)
C13'0.164 (15)0.109 (14)0.104 (12)0.009 (12)0.019 (11)−0.054 (11)
C1—C21.366 (4)C10—H100.9300
C1—C61.393 (4)C11—O4'1.13 (2)
C1—Cl21.735 (3)C11—O31.191 (4)
C2—C31.363 (5)C11—O41.392 (8)
C2—H20.9300O1—S11.430 (2)
C3—C41.373 (5)O2—S11.431 (2)
C3—Cl11.744 (3)O4—C121.464 (6)
C4—C51.380 (4)C12—C131.447 (9)
C4—H40.9300C12—H12A0.9700
C5—C61.395 (4)C12—H12B0.9700
C5—H50.9300C13—H13A0.9600
C6—S11.761 (3)C13—H13B0.9600
C7—C81.307 (4)C13—H13C0.9600
C7—S11.752 (3)O4'—C12'1.456 (10)
C7—H70.9300C12'—C13'1.461 (17)
C8—C91.449 (4)C12'—H12C0.9700
C8—H80.9300C12'—H12D0.9700
C9—C101.315 (4)C13'—H13D0.9600
C9—H90.9300C13'—H13E0.9600
C10—C111.477 (4)C13'—H13F0.9600
C2—C1—C6121.1 (3)O4—C11—C10109.9 (4)
C2—C1—Cl2117.1 (2)O1—S1—O2118.12 (13)
C6—C1—Cl2121.7 (2)O1—S1—C7108.15 (13)
C3—C2—C1118.7 (3)O2—S1—C7109.99 (13)
C3—C2—H2120.7O1—S1—C6107.18 (12)
C1—C2—H2120.7O2—S1—C6109.29 (14)
C2—C3—C4122.9 (3)C7—S1—C6103.03 (12)
C2—C3—Cl1118.5 (3)C11—O4—C12117.5 (6)
C4—C3—Cl1118.6 (3)C13—C12—O4110.3 (6)
C3—C4—C5118.0 (3)C13—C12—H12A109.6
C3—C4—H4121.0O4—C12—H12A109.6
C5—C4—H4121.0C13—C12—H12B109.6
C4—C5—C6120.8 (3)O4—C12—H12B109.6
C4—C5—H5119.6H12A—C12—H12B108.1
C6—C5—H5119.6C12—C13—H13A109.5
C1—C6—C5118.4 (3)C12—C13—H13B109.5
C1—C6—S1123.1 (2)H13A—C13—H13B109.5
C5—C6—S1118.5 (2)C12—C13—H13C109.5
C8—C7—S1121.3 (2)H13A—C13—H13C109.5
C8—C7—H7119.3H13B—C13—H13C109.5
S1—C7—H7119.3C11—O4'—C12'118.9 (17)
C7—C8—C9122.7 (2)O4'—C12'—C13'108.6 (13)
C7—C8—H8118.7O4'—C12'—H12C110.0
C9—C8—H8118.7C13'—C12'—H12C110.0
C10—C9—C8124.4 (2)O4'—C12'—H12D110.0
C10—C9—H9117.8C13'—C12'—H12D110.0
C8—C9—H9117.8H12C—C12'—H12D108.4
C9—C10—C11121.5 (3)C12'—C13'—H13D109.5
C9—C10—H10119.2C12'—C13'—H13E109.5
C11—C10—H10119.2H13D—C13'—H13E109.5
O4'—C11—O3116.5 (10)C12'—C13'—H13F109.5
O3—C11—O4125.2 (4)H13D—C13'—H13F109.5
O4'—C11—C10116.6 (10)H13E—C13'—H13F109.5
O3—C11—C10124.7 (3)
C6—C1—C2—C30.1 (4)C9—C10—C11—O4178.3 (4)
Cl2—C1—C2—C3−179.1 (2)C8—C7—S1—O1−2.3 (3)
C1—C2—C3—C4−1.2 (5)C8—C7—S1—O2−132.6 (2)
C1—C2—C3—Cl1178.1 (2)C8—C7—S1—C6110.9 (3)
C2—C3—C4—C52.1 (5)C1—C6—S1—O1−179.8 (2)
Cl1—C3—C4—C5−177.3 (2)C5—C6—S1—O11.1 (2)
C3—C4—C5—C6−1.8 (4)C1—C6—S1—O2−50.6 (2)
C2—C1—C6—C50.1 (4)C5—C6—S1—O2130.3 (2)
Cl2—C1—C6—C5179.29 (19)C1—C6—S1—C766.3 (2)
C2—C1—C6—S1−179.0 (2)C5—C6—S1—C7−112.8 (2)
Cl2—C1—C6—S10.2 (3)O4'—C11—O4—C1273 (3)
C4—C5—C6—C10.8 (4)O3—C11—O4—C121.3 (9)
C4—C5—C6—S1180.0 (2)C10—C11—O4—C12−174.4 (5)
S1—C7—C8—C9−175.6 (2)C11—O4—C12—C13−82.9 (10)
C7—C8—C9—C10179.3 (3)O3—C11—O4'—C12'15 (2)
C8—C9—C10—C11−176.5 (3)O4—C11—O4'—C12'−105 (4)
C9—C10—C11—O4'−159.7 (13)C10—C11—O4'—C12'178.7 (15)
C9—C10—C11—O32.6 (6)C11—O4'—C12'—C13'163 (2)
D—H···AD—HH···AD···AD—H···A
C7—H7···O1i0.932.363.217 (4)153
C9—H9···O1i0.932.503.312 (4)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C7—H7⋯O1i 0.932.363.217 (4)153
C9—H9⋯O1i 0.932.503.312 (4)146

Symmetry code: (i) .

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