Literature DB >> 22589955

(2E,4E)-Ethyl 5-(phenyl-sulfon-yl)penta-2,4-dienoate.

Ulaganathan Sankar, V Sabari, G Suresh, Ramakrishnan Uma, S Aravindhan.   

Abstract

In the title compound, C(13)H(14)O(4)S, both C=C double bonds adopt an E conformation. In the crystal, mol-ecules are linked into centrosymmetric R(2) (2)(14) dimers via pairs of C-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22589955      PMCID: PMC3344046          DOI: 10.1107/S1600536812009907

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of phenyl sulfonyl-containing compounds see: De-Benedetti et al. (1985 ▶). For a related structure, see: Li (2011 ▶).

Experimental

Crystal data

C13H14O4S M = 266.30 Triclinic, a = 6.2525 (3) Å b = 7.8889 (4) Å c = 14.5049 (7) Å α = 82.828 (3)° β = 87.261 (2)° γ = 72.426 (2)° V = 676.69 (6) Å3 Z = 2 Mo Kα radiation μ = 0.24 mm−1 T = 298 K 0.45 × 0.38 × 0.15 mm

Data collection

Bruker APEXII KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.899, T max = 0.965 8948 measured reflections 3084 independent reflections 2621 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.147 S = 1.87 3084 reflections 164 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812009907/bt5831sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812009907/bt5831Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812009907/bt5831Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14O4SZ = 2
Mr = 266.30F(000) = 280
Triclinic, P1Dx = 1.307 Mg m3
a = 6.2525 (3) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.8889 (4) ÅCell parameters from 5946 reflections
c = 14.5049 (7) Åθ = 2.7–28.3°
α = 82.828 (3)°µ = 0.24 mm1
β = 87.261 (2)°T = 298 K
γ = 72.426 (2)°Triclinic, colourless
V = 676.69 (6) Å30.45 × 0.38 × 0.15 mm
Bruker APEXII KappaCCD diffractometer3084 independent reflections
Radiation source: fine-focus sealed tube2621 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
Detector resolution: 15.9948 pixels mm-1θmax = 28.4°, θmin = 2.7°
ω and φ scansh = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2008)k = −10→9
Tmin = 0.899, Tmax = 0.965l = −19→19
8948 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.147w = 1/[σ2(Fo2) + (0.0551P)2] where P = (Fo2 + 2Fc2)/3
S = 1.87(Δ/σ)max = 0.001
3084 reflectionsΔρmax = 0.29 e Å3
164 parametersΔρmin = −0.30 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008)
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0173 (18)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.5671 (3)−0.0639 (2)0.13787 (12)0.0577 (4)
H11.6549−0.00010.15860.069*
C21.6638 (3)−0.2359 (3)0.11608 (12)0.0670 (5)
H21.8179−0.28810.12190.080*
C31.5361 (3)−0.3300 (2)0.08618 (12)0.0634 (5)
H31.6035−0.44650.07260.076*
C41.3103 (3)−0.2555 (3)0.07586 (14)0.0714 (5)
H41.2246−0.32060.05490.086*
C51.2088 (3)−0.0820 (2)0.09680 (12)0.0612 (4)
H51.0550−0.02990.08950.073*
C61.3387 (2)0.0124 (2)0.12854 (9)0.0446 (3)
C71.0978 (3)0.1812 (2)0.27041 (10)0.0534 (4)
H71.19520.11320.31690.064*
C80.8815 (3)0.2378 (2)0.29034 (11)0.0545 (4)
H80.78120.30230.24410.065*
C90.7980 (3)0.2008 (2)0.38347 (11)0.0585 (4)
H90.90130.12960.42710.070*
C100.5861 (3)0.2604 (2)0.41125 (11)0.0603 (4)
H100.47680.33070.36970.072*
C110.5253 (3)0.2140 (3)0.50916 (12)0.0616 (4)
C120.2457 (4)0.2713 (3)0.62613 (15)0.0902 (7)
H12A0.28300.14400.64660.108*
H12B0.32290.32420.66550.108*
C130.0051 (4)0.3538 (4)0.63268 (17)0.1022 (8)
H13A−0.03130.47790.60840.153*
H13B−0.04200.34360.69660.153*
H13C−0.07040.29440.59740.153*
O11.0292 (2)0.32081 (16)0.09966 (8)0.0719 (4)
O21.3810 (2)0.30846 (17)0.17469 (9)0.0749 (4)
O30.6500 (2)0.1095 (2)0.56403 (9)0.0889 (5)
O40.3154 (2)0.3006 (2)0.52876 (8)0.0778 (4)
S11.20983 (6)0.22766 (5)0.16117 (3)0.05254 (19)
U11U22U33U12U13U23
C10.0426 (8)0.0583 (10)0.0721 (10)−0.0123 (7)0.0000 (7)−0.0144 (8)
C20.0466 (9)0.0661 (12)0.0762 (11)0.0015 (8)0.0056 (8)−0.0106 (9)
C30.0706 (11)0.0474 (9)0.0635 (9)−0.0046 (8)0.0109 (8)−0.0111 (7)
C40.0729 (12)0.0618 (12)0.0873 (12)−0.0260 (10)0.0008 (10)−0.0236 (10)
C50.0462 (8)0.0578 (10)0.0782 (11)−0.0109 (8)−0.0021 (8)−0.0140 (8)
C60.0428 (7)0.0419 (8)0.0454 (7)−0.0087 (6)0.0009 (6)−0.0020 (6)
C70.0576 (9)0.0475 (9)0.0494 (8)−0.0075 (7)−0.0029 (7)−0.0041 (6)
C80.0565 (9)0.0496 (9)0.0516 (8)−0.0064 (7)−0.0025 (7)−0.0074 (7)
C90.0590 (10)0.0562 (10)0.0548 (9)−0.0099 (8)−0.0007 (7)−0.0047 (7)
C100.0572 (10)0.0603 (11)0.0552 (9)−0.0060 (8)−0.0003 (7)−0.0046 (8)
C110.0595 (10)0.0586 (11)0.0615 (10)−0.0110 (8)0.0010 (8)−0.0047 (8)
C120.0948 (15)0.0925 (16)0.0674 (11)−0.0119 (13)0.0204 (11)0.0019 (11)
C130.0908 (16)0.122 (2)0.0886 (15)−0.0233 (15)0.0273 (13)−0.0240 (15)
O10.0726 (8)0.0597 (8)0.0600 (7)0.0108 (6)−0.0020 (6)0.0051 (5)
O20.0824 (9)0.0565 (8)0.0942 (9)−0.0331 (7)0.0119 (7)−0.0141 (7)
O30.0740 (9)0.1009 (12)0.0691 (8)−0.0048 (8)−0.0020 (7)0.0225 (7)
O40.0705 (8)0.0792 (10)0.0640 (7)0.0013 (7)0.0155 (6)0.0001 (7)
S10.0557 (3)0.0399 (3)0.0553 (3)−0.00635 (19)0.00194 (18)−0.00117 (17)
C1—C21.378 (2)C8—H80.9300
C1—C61.378 (2)C9—C101.326 (2)
C1—H10.9300C9—H90.9300
C2—C31.359 (2)C10—C111.483 (2)
C2—H20.9300C10—H100.9300
C3—C41.363 (3)C11—O31.195 (2)
C3—H30.9300C11—O41.319 (2)
C4—C51.389 (3)C12—C131.451 (3)
C4—H40.9300C12—O41.469 (2)
C5—C61.383 (2)C12—H12A0.9700
C5—H50.9300C12—H12B0.9700
C6—S11.7595 (15)C13—H13A0.9600
C7—C81.320 (2)C13—H13B0.9600
C7—S11.7434 (15)C13—H13C0.9600
C7—H70.9300O1—S11.4294 (12)
C8—C91.452 (2)O2—S11.4328 (13)
C2—C1—C6119.12 (15)C8—C9—H9117.4
C2—C1—H1120.4C9—C10—C11119.36 (17)
C6—C1—H1120.4C9—C10—H10120.3
C3—C2—C1120.67 (15)C11—C10—H10120.3
C3—C2—H2119.7O3—C11—O4123.62 (16)
C1—C2—H2119.7O3—C11—C10124.36 (17)
C2—C3—C4120.76 (17)O4—C11—C10112.01 (15)
C2—C3—H3119.6C13—C12—O4108.24 (19)
C4—C3—H3119.6C13—C12—H12A110.1
C3—C4—C5119.78 (17)O4—C12—H12A110.1
C3—C4—H4120.1C13—C12—H12B110.1
C5—C4—H4120.1O4—C12—H12B110.1
C6—C5—C4119.32 (16)H12A—C12—H12B108.4
C6—C5—H5120.3C12—C13—H13A109.5
C4—C5—H5120.3C12—C13—H13B109.5
C1—C6—C5120.34 (15)H13A—C13—H13B109.5
C1—C6—S1119.90 (12)C12—C13—H13C109.5
C5—C6—S1119.71 (11)H13A—C13—H13C109.5
C8—C7—S1123.19 (13)H13B—C13—H13C109.5
C8—C7—H7118.4C11—O4—C12115.52 (15)
S1—C7—H7118.4O1—S1—O2119.36 (8)
C7—C8—C9120.95 (15)O1—S1—C7108.53 (8)
C7—C8—H8119.5O2—S1—C7107.09 (8)
C9—C8—H8119.5O1—S1—C6109.53 (7)
C10—C9—C8125.22 (16)O2—S1—C6108.57 (7)
C10—C9—H9117.4C7—S1—C6102.40 (7)
C6—C1—C2—C3−0.3 (3)O3—C11—O4—C124.5 (3)
C1—C2—C3—C40.9 (3)C10—C11—O4—C12−176.12 (16)
C2—C3—C4—C5−0.5 (3)C13—C12—O4—C11−171.7 (2)
C3—C4—C5—C6−0.4 (3)C8—C7—S1—O1−4.46 (18)
C2—C1—C6—C5−0.7 (2)C8—C7—S1—O2125.64 (16)
C2—C1—C6—S1176.98 (12)C8—C7—S1—C6−120.23 (16)
C4—C5—C6—C11.0 (2)C1—C6—S1—O1144.75 (14)
C4—C5—C6—S1−176.61 (14)C5—C6—S1—O1−37.59 (14)
S1—C7—C8—C9−177.71 (12)C1—C6—S1—O212.83 (15)
C7—C8—C9—C10176.02 (18)C5—C6—S1—O2−169.51 (12)
C8—C9—C10—C11−179.12 (15)C1—C6—S1—C7−100.21 (14)
C9—C10—C11—O3−8.3 (3)C5—C6—S1—C777.46 (14)
C9—C10—C11—O4172.26 (17)
D—H···AD—HH···AD···AD—H···A
C7—H7···O3i0.932.323.212 (2)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯O3i0.932.323.212 (2)161

Symmetry code: (i) .

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