| Literature DB >> 24427022 |
Jie Gao1, Liangru Yang1, Wenpeng Mai1, Jinwei Yuan1, Pu Mao1.
Abstract
In the title compound, C28H23BrN2OS, the dihedral angles formed by the imidazole ring with the 5-bromo-thio-phenyl and phenyl rings are 76.90 (8), 34.02 (10) and 80.93 (11)°, respectively. The chiral centre maintains the S configuration of the l-phenyl-alaninol starting material. In the crystal, mol-ecules are linked by O-H⋯N hydrogen bonds, forming chains running parallel to the a-axis direction.Entities:
Year: 2013 PMID: 24427022 PMCID: PMC3884508 DOI: 10.1107/S1600536813021016
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C28H23BrN2OS | |
| Orthorhombic, | Cu |
| Hall symbol: P 2ac 2ab | Cell parameters from 4493 reflections |
| θ = 3.9–72.3° | |
| µ = 3.33 mm−1 | |
| Block, colourless | |
| 0.3 × 0.28 × 0.26 mm |
| Agilent Xcalibur (Eos, Gemini) diffractometer | 4264 independent reflections |
| Radiation source: Enhance (Cu) X-ray Source | 4033 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.2312 pixels mm-1 | θmax = 67.1°, θmin = 3.9° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 8866 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 4264 reflections | Δρmax = 0.22 e Å−3 |
| 302 parameters | Δρmin = −0.44 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983); 1834 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.004 (16) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Br1 | 0.26010 (5) | 0.97884 (3) | 0.26215 (3) | 0.08774 (14) | |
| S1 | 0.29866 (8) | 0.83956 (5) | 0.39570 (5) | 0.06109 (18) | |
| O1 | 0.5090 (3) | 0.60857 (15) | 0.42808 (18) | 0.0755 (7) | |
| H1 | 0.537 (4) | 0.658 (3) | 0.428 (3) | 0.093 (14)* | |
| N1 | 0.1628 (2) | 0.73730 (13) | 0.56318 (13) | 0.0467 (4) | |
| N2 | 0.2202 (2) | 0.62572 (12) | 0.48784 (12) | 0.0422 (4) | |
| C1 | 0.1975 (3) | 0.75939 (19) | 0.74105 (18) | 0.0607 (6) | |
| H1A | 0.2348 | 0.8022 | 0.7082 | 0.073* | |
| C2 | 0.1762 (4) | 0.7731 (2) | 0.8247 (2) | 0.0731 (9) | |
| H2 | 0.2011 | 0.8246 | 0.8481 | 0.088* | |
| C3 | 0.1178 (4) | 0.7098 (2) | 0.87404 (18) | 0.0737 (9) | |
| H3 | 0.1026 | 0.7192 | 0.9302 | 0.088* | |
| C4 | 0.0831 (4) | 0.6345 (2) | 0.83955 (19) | 0.0667 (8) | |
| H4 | 0.0435 | 0.5923 | 0.8723 | 0.080* | |
| C5 | 0.1059 (3) | 0.61977 (17) | 0.75615 (17) | 0.0561 (6) | |
| H5 | 0.0825 | 0.5675 | 0.7337 | 0.067* | |
| C6 | 0.1632 (3) | 0.68165 (16) | 0.70573 (15) | 0.0464 (5) | |
| C7 | 0.1817 (2) | 0.67005 (15) | 0.61521 (14) | 0.0429 (5) | |
| C8 | 0.2177 (2) | 0.59945 (14) | 0.57013 (14) | 0.0412 (5) | |
| C9 | 0.2546 (3) | 0.51201 (13) | 0.59565 (14) | 0.0445 (5) | |
| C10 | 0.3964 (3) | 0.48806 (18) | 0.6020 (2) | 0.0628 (7) | |
| H10 | 0.4682 | 0.5264 | 0.5892 | 0.075* | |
| C11 | 0.4316 (5) | 0.4072 (2) | 0.6272 (3) | 0.0819 (11) | |
| H11 | 0.5269 | 0.3913 | 0.6313 | 0.098* | |
| C12 | 0.3253 (5) | 0.3500 (2) | 0.6463 (2) | 0.0811 (11) | |
| H12 | 0.3488 | 0.2959 | 0.6641 | 0.097* | |
| C13 | 0.1856 (5) | 0.3734 (2) | 0.6388 (2) | 0.0772 (10) | |
| H13 | 0.1139 | 0.3348 | 0.6512 | 0.093* | |
| C14 | 0.1495 (3) | 0.45393 (19) | 0.61287 (19) | 0.0601 (7) | |
| H14 | 0.0539 | 0.4688 | 0.6071 | 0.072* | |
| C15 | 0.0418 (3) | 0.41288 (18) | 0.4051 (2) | 0.0625 (7) | |
| H15 | 0.1258 | 0.3886 | 0.3856 | 0.075* | |
| C16 | −0.0611 (4) | 0.3619 (2) | 0.4394 (2) | 0.0754 (9) | |
| H16 | −0.0465 | 0.3040 | 0.4427 | 0.091* | |
| C17 | −0.1868 (4) | 0.3970 (3) | 0.4690 (2) | 0.0799 (10) | |
| H17 | −0.2571 | 0.3627 | 0.4919 | 0.096* | |
| C18 | −0.2062 (4) | 0.4825 (3) | 0.4643 (2) | 0.0789 (9) | |
| H18 | −0.2897 | 0.5067 | 0.4845 | 0.095* | |
| C19 | −0.1017 (3) | 0.5331 (2) | 0.42947 (19) | 0.0636 (7) | |
| H19 | −0.1162 | 0.5911 | 0.4267 | 0.076* | |
| C20 | 0.0242 (3) | 0.49927 (17) | 0.39859 (16) | 0.0512 (6) | |
| C21 | 0.1378 (3) | 0.55276 (18) | 0.35912 (15) | 0.0514 (6) | |
| H21A | 0.0956 | 0.6056 | 0.3412 | 0.062* | |
| H21B | 0.1737 | 0.5240 | 0.3104 | 0.062* | |
| C22 | 0.2629 (3) | 0.57177 (13) | 0.41736 (14) | 0.0440 (5) | |
| H22 | 0.2925 | 0.5176 | 0.4410 | 0.053* | |
| C23 | 0.3935 (3) | 0.60763 (16) | 0.37267 (17) | 0.0515 (6) | |
| H23A | 0.4164 | 0.5730 | 0.3250 | 0.062* | |
| H23B | 0.3736 | 0.6645 | 0.3535 | 0.062* | |
| C24 | 0.1849 (3) | 0.70913 (15) | 0.48779 (15) | 0.0440 (5) | |
| C25 | 0.1707 (3) | 0.76397 (15) | 0.41474 (15) | 0.0479 (5) | |
| C26 | 0.0587 (4) | 0.7737 (2) | 0.3627 (2) | 0.0661 (8) | |
| H26 | −0.0214 | 0.7391 | 0.3639 | 0.079* | |
| C27 | 0.0743 (4) | 0.8412 (2) | 0.3063 (2) | 0.0672 (8) | |
| H27 | 0.0069 | 0.8558 | 0.2665 | 0.081* | |
| C28 | 0.1975 (3) | 0.88144 (18) | 0.31747 (17) | 0.0582 (7) |
| Br1 | 0.0876 (2) | 0.0822 (2) | 0.0934 (3) | 0.00601 (19) | 0.0010 (2) | 0.04352 (19) |
| S1 | 0.0579 (4) | 0.0608 (4) | 0.0646 (4) | −0.0061 (3) | −0.0146 (3) | 0.0179 (3) |
| O1 | 0.0605 (12) | 0.0598 (12) | 0.1062 (19) | −0.0204 (10) | −0.0170 (12) | 0.0204 (13) |
| N1 | 0.0503 (11) | 0.0417 (10) | 0.0482 (10) | 0.0091 (9) | 0.0002 (9) | −0.0031 (8) |
| N2 | 0.0445 (10) | 0.0396 (9) | 0.0424 (9) | 0.0005 (8) | −0.0027 (8) | −0.0058 (7) |
| C1 | 0.0658 (15) | 0.0574 (14) | 0.0588 (15) | 0.0018 (13) | 0.0066 (13) | −0.0128 (13) |
| C2 | 0.082 (2) | 0.0712 (19) | 0.0659 (18) | 0.0060 (17) | 0.0016 (16) | −0.0252 (16) |
| C3 | 0.089 (2) | 0.086 (2) | 0.0468 (14) | 0.0267 (19) | 0.0031 (15) | −0.0161 (15) |
| C4 | 0.081 (2) | 0.0697 (19) | 0.0492 (15) | 0.0164 (16) | 0.0028 (15) | 0.0049 (14) |
| C5 | 0.0658 (15) | 0.0532 (14) | 0.0493 (14) | 0.0095 (12) | 0.0009 (13) | −0.0003 (12) |
| C6 | 0.0430 (12) | 0.0497 (13) | 0.0465 (12) | 0.0116 (10) | −0.0045 (10) | −0.0066 (10) |
| C7 | 0.0429 (11) | 0.0438 (11) | 0.0419 (11) | 0.0059 (10) | 0.0007 (9) | −0.0027 (10) |
| C8 | 0.0394 (12) | 0.0403 (10) | 0.0438 (11) | −0.0012 (9) | −0.0037 (9) | −0.0025 (9) |
| C9 | 0.0522 (12) | 0.0398 (10) | 0.0416 (10) | 0.0021 (10) | −0.0035 (10) | −0.0058 (8) |
| C10 | 0.0583 (16) | 0.0536 (15) | 0.0765 (18) | 0.0071 (13) | −0.0085 (15) | −0.0030 (15) |
| C11 | 0.085 (2) | 0.070 (2) | 0.092 (3) | 0.0318 (19) | −0.016 (2) | −0.0027 (19) |
| C12 | 0.135 (3) | 0.0417 (14) | 0.0667 (19) | 0.0170 (19) | −0.007 (2) | 0.0008 (14) |
| C13 | 0.112 (3) | 0.0451 (15) | 0.074 (2) | −0.0154 (17) | 0.003 (2) | 0.0015 (14) |
| C14 | 0.0639 (17) | 0.0530 (14) | 0.0633 (16) | −0.0069 (13) | 0.0005 (14) | −0.0037 (13) |
| C15 | 0.0645 (17) | 0.0576 (16) | 0.0654 (17) | −0.0092 (13) | −0.0040 (14) | −0.0081 (14) |
| C16 | 0.093 (2) | 0.0605 (18) | 0.073 (2) | −0.0212 (17) | −0.0041 (19) | 0.0017 (15) |
| C17 | 0.075 (2) | 0.099 (3) | 0.0658 (19) | −0.035 (2) | −0.0058 (17) | 0.0093 (18) |
| C18 | 0.0549 (17) | 0.110 (3) | 0.0721 (19) | −0.0020 (18) | 0.0054 (14) | 0.0033 (19) |
| C19 | 0.0636 (17) | 0.0641 (17) | 0.0633 (16) | 0.0032 (14) | −0.0007 (14) | −0.0025 (14) |
| C20 | 0.0532 (14) | 0.0564 (14) | 0.0441 (12) | −0.0059 (11) | −0.0097 (11) | −0.0081 (11) |
| C21 | 0.0592 (15) | 0.0526 (14) | 0.0426 (12) | −0.0050 (12) | −0.0050 (11) | −0.0059 (11) |
| C22 | 0.0501 (12) | 0.0370 (9) | 0.0451 (11) | −0.0024 (10) | 0.0006 (11) | −0.0057 (8) |
| C23 | 0.0566 (15) | 0.0424 (12) | 0.0556 (14) | −0.0028 (11) | 0.0051 (12) | −0.0070 (11) |
| C24 | 0.0435 (12) | 0.0419 (11) | 0.0466 (12) | 0.0026 (10) | −0.0036 (10) | −0.0005 (10) |
| C25 | 0.0509 (13) | 0.0442 (12) | 0.0486 (12) | 0.0049 (10) | −0.0007 (11) | −0.0029 (10) |
| C26 | 0.0626 (17) | 0.0566 (15) | 0.079 (2) | −0.0013 (13) | −0.0202 (16) | 0.0057 (15) |
| C27 | 0.0716 (19) | 0.0643 (17) | 0.0658 (18) | 0.0079 (16) | −0.0233 (15) | 0.0063 (15) |
| C28 | 0.0672 (17) | 0.0532 (14) | 0.0544 (14) | 0.0103 (13) | −0.0025 (13) | 0.0117 (12) |
| Br1—C28 | 1.877 (3) | C12—H12 | 0.9300 |
| S1—C25 | 1.722 (3) | C12—C13 | 1.366 (6) |
| S1—C28 | 1.713 (3) | C13—H13 | 0.9300 |
| O1—H1 | 0.83 (4) | C13—C14 | 1.385 (5) |
| O1—C23 | 1.404 (4) | C14—H14 | 0.9300 |
| N1—C7 | 1.368 (3) | C15—H15 | 0.9300 |
| N1—C24 | 1.313 (3) | C15—C16 | 1.374 (5) |
| N2—C8 | 1.392 (3) | C15—C20 | 1.383 (4) |
| N2—C22 | 1.478 (3) | C16—H16 | 0.9300 |
| N2—C24 | 1.362 (3) | C16—C17 | 1.386 (6) |
| C1—H1A | 0.9300 | C17—H17 | 0.9300 |
| C1—C2 | 1.383 (4) | C17—C18 | 1.370 (5) |
| C1—C6 | 1.395 (4) | C18—H18 | 0.9300 |
| C2—H2 | 0.9300 | C18—C19 | 1.383 (5) |
| C2—C3 | 1.392 (5) | C19—H19 | 0.9300 |
| C3—H3 | 0.9300 | C19—C20 | 1.388 (4) |
| C3—C4 | 1.357 (5) | C20—C21 | 1.502 (4) |
| C4—H4 | 0.9300 | C21—H21A | 0.9700 |
| C4—C5 | 1.383 (4) | C21—H21B | 0.9700 |
| C5—H5 | 0.9300 | C21—C22 | 1.532 (3) |
| C5—C6 | 1.382 (4) | C22—H22 | 0.9800 |
| C6—C7 | 1.483 (3) | C22—C23 | 1.530 (4) |
| C7—C8 | 1.377 (3) | C23—H23A | 0.9700 |
| C8—C9 | 1.486 (3) | C23—H23B | 0.9700 |
| C9—C10 | 1.385 (4) | C24—C25 | 1.471 (3) |
| C9—C14 | 1.376 (4) | C25—C26 | 1.352 (4) |
| C10—H10 | 0.9300 | C26—H26 | 0.9300 |
| C10—C11 | 1.385 (4) | C26—C27 | 1.412 (4) |
| C11—H11 | 0.9300 | C27—H27 | 0.9300 |
| C11—C12 | 1.381 (6) | C27—C28 | 1.331 (5) |
| C28—S1—C25 | 90.92 (14) | C20—C15—H15 | 119.1 |
| C23—O1—H1 | 105 (3) | C15—C16—H16 | 120.0 |
| C24—N1—C7 | 106.5 (2) | C15—C16—C17 | 120.0 (3) |
| C8—N2—C22 | 124.47 (19) | C17—C16—H16 | 120.0 |
| C24—N2—C8 | 106.65 (19) | C16—C17—H17 | 120.4 |
| C24—N2—C22 | 128.8 (2) | C18—C17—C16 | 119.3 (3) |
| C2—C1—H1A | 119.8 | C18—C17—H17 | 120.4 |
| C2—C1—C6 | 120.3 (3) | C17—C18—H18 | 119.9 |
| C6—C1—H1A | 119.8 | C17—C18—C19 | 120.1 (3) |
| C1—C2—H2 | 119.9 | C19—C18—H18 | 119.9 |
| C1—C2—C3 | 120.2 (3) | C18—C19—H19 | 119.2 |
| C3—C2—H2 | 119.9 | C18—C19—C20 | 121.6 (3) |
| C2—C3—H3 | 120.2 | C20—C19—H19 | 119.2 |
| C4—C3—C2 | 119.5 (3) | C15—C20—C19 | 117.2 (3) |
| C4—C3—H3 | 120.2 | C15—C20—C21 | 120.4 (3) |
| C3—C4—H4 | 119.6 | C19—C20—C21 | 122.5 (3) |
| C3—C4—C5 | 120.7 (3) | C20—C21—H21A | 109.0 |
| C5—C4—H4 | 119.6 | C20—C21—H21B | 109.0 |
| C4—C5—H5 | 119.6 | C20—C21—C22 | 113.1 (2) |
| C6—C5—C4 | 120.9 (3) | H21A—C21—H21B | 107.8 |
| C6—C5—H5 | 119.6 | C22—C21—H21A | 109.0 |
| C1—C6—C7 | 119.0 (3) | C22—C21—H21B | 109.0 |
| C5—C6—C1 | 118.4 (3) | N2—C22—C21 | 112.3 (2) |
| C5—C6—C7 | 122.5 (2) | N2—C22—H22 | 106.5 |
| N1—C7—C6 | 119.6 (2) | N2—C22—C23 | 111.38 (19) |
| N1—C7—C8 | 109.9 (2) | C21—C22—H22 | 106.5 |
| C8—C7—C6 | 130.6 (2) | C23—C22—C21 | 113.3 (2) |
| N2—C8—C9 | 122.65 (19) | C23—C22—H22 | 106.5 |
| C7—C8—N2 | 105.4 (2) | O1—C23—C22 | 108.6 (2) |
| C7—C8—C9 | 131.9 (2) | O1—C23—H23A | 110.0 |
| C10—C9—C8 | 119.9 (2) | O1—C23—H23B | 110.0 |
| C14—C9—C8 | 120.9 (2) | C22—C23—H23A | 110.0 |
| C14—C9—C10 | 119.2 (3) | C22—C23—H23B | 110.0 |
| C9—C10—H10 | 119.9 | H23A—C23—H23B | 108.3 |
| C11—C10—C9 | 120.2 (3) | N1—C24—N2 | 111.6 (2) |
| C11—C10—H10 | 119.9 | N1—C24—C25 | 121.9 (2) |
| C10—C11—H11 | 120.0 | N2—C24—C25 | 126.5 (2) |
| C12—C11—C10 | 120.1 (3) | C24—C25—S1 | 119.39 (19) |
| C12—C11—H11 | 120.0 | C26—C25—S1 | 110.4 (2) |
| C11—C12—H12 | 120.2 | C26—C25—C24 | 129.5 (3) |
| C13—C12—C11 | 119.5 (3) | C25—C26—H26 | 123.0 |
| C13—C12—H12 | 120.2 | C25—C26—C27 | 114.0 (3) |
| C12—C13—H13 | 119.6 | C27—C26—H26 | 123.0 |
| C12—C13—C14 | 120.7 (3) | C26—C27—H27 | 124.3 |
| C14—C13—H13 | 119.6 | C28—C27—C26 | 111.4 (3) |
| C9—C14—C13 | 120.2 (3) | C28—C27—H27 | 124.3 |
| C9—C14—H14 | 119.9 | S1—C28—Br1 | 119.80 (18) |
| C13—C14—H14 | 119.9 | C27—C28—Br1 | 126.9 (2) |
| C16—C15—H15 | 119.1 | C27—C28—S1 | 113.2 (2) |
| C16—C15—C20 | 121.9 (3) | ||
| S1—C25—C26—C27 | 0.6 (4) | C10—C11—C12—C13 | 1.0 (6) |
| N1—C7—C8—N2 | −0.1 (3) | C11—C12—C13—C14 | −0.5 (6) |
| N1—C7—C8—C9 | 177.5 (2) | C12—C13—C14—C9 | −1.1 (5) |
| N1—C24—C25—S1 | 72.7 (3) | C14—C9—C10—C11 | −1.5 (5) |
| N1—C24—C25—C26 | −96.9 (4) | C15—C16—C17—C18 | −0.5 (5) |
| N2—C8—C9—C10 | 79.5 (3) | C15—C20—C21—C22 | −79.7 (3) |
| N2—C8—C9—C14 | −100.2 (3) | C16—C15—C20—C19 | 0.9 (5) |
| N2—C22—C23—O1 | 62.7 (3) | C16—C15—C20—C21 | −178.7 (3) |
| N2—C24—C25—S1 | −107.7 (3) | C16—C17—C18—C19 | 0.6 (5) |
| N2—C24—C25—C26 | 82.7 (4) | C17—C18—C19—C20 | 0.1 (5) |
| C1—C2—C3—C4 | 0.6 (6) | C18—C19—C20—C15 | −0.9 (4) |
| C1—C6—C7—N1 | −31.8 (4) | C18—C19—C20—C21 | 178.8 (3) |
| C1—C6—C7—C8 | 147.7 (3) | C19—C20—C21—C22 | 100.6 (3) |
| C2—C1—C6—C5 | 1.0 (4) | C20—C15—C16—C17 | −0.3 (5) |
| C2—C1—C6—C7 | 177.5 (3) | C20—C21—C22—N2 | −66.4 (3) |
| C2—C3—C4—C5 | 0.4 (5) | C20—C21—C22—C23 | 166.3 (2) |
| C3—C4—C5—C6 | −0.7 (5) | C21—C22—C23—O1 | −169.6 (2) |
| C4—C5—C6—C1 | 0.0 (4) | C22—N2—C8—C7 | 176.0 (2) |
| C4—C5—C6—C7 | −176.4 (3) | C22—N2—C8—C9 | −1.8 (4) |
| C5—C6—C7—N1 | 144.6 (3) | C22—N2—C24—N1 | −175.4 (2) |
| C5—C6—C7—C8 | −35.8 (4) | C22—N2—C24—C25 | 5.0 (4) |
| C6—C1—C2—C3 | −1.3 (5) | C24—N1—C7—C6 | −179.7 (2) |
| C6—C7—C8—N2 | −179.6 (2) | C24—N1—C7—C8 | 0.6 (3) |
| C6—C7—C8—C9 | −2.1 (5) | C24—N2—C8—C7 | −0.5 (3) |
| C7—N1—C24—N2 | −1.0 (3) | C24—N2—C8—C9 | −178.3 (2) |
| C7—N1—C24—C25 | 178.6 (2) | C24—N2—C22—C21 | −71.2 (3) |
| C7—C8—C9—C10 | −97.7 (3) | C24—N2—C22—C23 | 57.1 (3) |
| C7—C8—C9—C14 | 82.6 (3) | C24—C25—C26—C27 | 170.9 (3) |
| C8—N2—C22—C21 | 113.1 (2) | C25—S1—C28—Br1 | 176.47 (18) |
| C8—N2—C22—C23 | −118.7 (2) | C25—S1—C28—C27 | 0.2 (3) |
| C8—N2—C24—N1 | 1.0 (3) | C25—C26—C27—C28 | −0.4 (4) |
| C8—N2—C24—C25 | −178.6 (2) | C26—C27—C28—Br1 | −175.9 (2) |
| C8—C9—C10—C11 | 178.8 (3) | C26—C27—C28—S1 | 0.1 (4) |
| C8—C9—C14—C13 | −178.2 (3) | C28—S1—C25—C24 | −171.9 (2) |
| C9—C10—C11—C12 | −0.1 (6) | C28—S1—C25—C26 | −0.5 (2) |
| C10—C9—C14—C13 | 2.1 (4) |
| H··· | ||||
| O1—H1···N1i | 0.83 (4) | 2.04 (4) | 2.838 (3) | 162 (4) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯N1i | 0.83 (4) | 2.04 (4) | 2.838 (3) | 162 (4) |
Symmetry code: (i) .