Literature DB >> 22719465

2-[4,5-Diphenyl-2-(pyridin-2-yl)-1H-imidazol-1-yl]-3-phenyl-propan-1-ol.

Liangru Yang1, Yongmei Xiao, Kun He, Jinwei Yuan, Pu Mao.   

Abstract

In the title compound, C(29)H(25)N(3)O, the central imidazole ring forms dihedral angles of 64.7 (3), 33.5 (3) and 81.2 (2)° with the pyridyl and two phenyl substituents, respectively. An intra-molecular C-H⋯N hydrogen bond is observed. In the crystal, O-H⋯N and C-H⋯O hydrogen bonds link the mol-ecules into chains parallel to the a axis.

Entities:  

Year:  2012        PMID: 22719465      PMCID: PMC3379267          DOI: 10.1107/S1600536812018703

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and properties of chiral ionic liquids, see: Ding & Armstrong (2005 ▶); Bwambok et al. (2008 ▶); Mao et al. (2010 ▶). For a related structure, see: Xiao et al. (2012 ▶).

Experimental

Crystal data

C29H25N3O M = 431.52 Orthorhombic, a = 9.2695 (4) Å b = 15.8818 (6) Å c = 16.0498 (6) Å V = 2362.79 (16) Å3 Z = 4 Cu Kα radiation μ = 0.58 mm−1 T = 291 K 0.38 × 0.28 × 0.25 mm

Data collection

Oxford Diffraction Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.809, T max = 0.868 9413 measured reflections 4442 independent reflections 3981 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.102 S = 1.04 4442 reflections 311 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.12 e Å−3 Δρmin = −0.13 e Å−3 Absolute structure: Flack (1983 ▶), 1871 Friedel pairs Flack parameter: 0.2 (4) Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812018703/rz2739sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812018703/rz2739Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812018703/rz2739Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C29H25N3OF(000) = 912
Mr = 431.52Dx = 1.213 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 3448 reflections
a = 9.2695 (4) Åθ = 3.9–70.3°
b = 15.8818 (6) ŵ = 0.58 mm1
c = 16.0498 (6) ÅT = 291 K
V = 2362.79 (16) Å3Prismatic, colourless
Z = 40.38 × 0.28 × 0.25 mm
Oxford Diffraction Xcalibur Eos Gemini diffractometer4442 independent reflections
Radiation source: fine-focus sealed tube3981 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
ω scansθmax = 70.4°, θmin = 3.9°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)h = −11→6
Tmin = 0.809, Tmax = 0.868k = −19→19
9413 measured reflectionsl = −19→18
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.038w = 1/[σ2(Fo2) + (0.0468P)2 + 0.1152P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.102(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.12 e Å3
4442 reflectionsΔρmin = −0.13 e Å3
311 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0043 (3)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1871 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.2 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.74800 (17)0.67325 (12)0.63461 (10)0.0746 (4)
H10.788 (3)0.6736 (19)0.5871 (18)0.094 (9)*
N10.38909 (18)0.81423 (9)0.51834 (9)0.0550 (4)
N20.45320 (16)0.73451 (8)0.62480 (8)0.0463 (3)
N30.3134 (2)0.60522 (11)0.49389 (10)0.0667 (5)
C10.3385 (3)1.00699 (12)0.64156 (14)0.0632 (5)
H1A0.31700.98290.69290.076*
C20.3175 (3)1.09285 (14)0.63001 (17)0.0765 (7)
H20.28011.12540.67310.092*
C30.3515 (4)1.12968 (14)0.55573 (18)0.0897 (9)
H30.33901.18730.54840.108*
C40.4043 (4)1.08104 (15)0.49205 (18)0.0922 (8)
H40.42701.10590.44130.111*
C50.4241 (3)0.99523 (14)0.50254 (15)0.0744 (6)
H50.45990.96290.45880.089*
C60.3908 (2)0.95713 (11)0.57826 (12)0.0559 (5)
C70.4089 (2)0.86522 (10)0.58664 (11)0.0507 (4)
C80.44924 (19)0.81699 (10)0.65331 (10)0.0462 (4)
C90.5020 (2)0.84066 (10)0.73772 (10)0.0499 (4)
C100.6491 (3)0.84668 (14)0.75092 (14)0.0680 (5)
H100.71330.83510.70790.082*
C110.7002 (4)0.87002 (17)0.82853 (18)0.0939 (9)
H110.79900.87480.83720.113*
C120.6071 (5)0.88607 (16)0.89254 (16)0.1047 (13)
H120.64250.90130.94460.126*
C130.4622 (4)0.87974 (17)0.87992 (14)0.0975 (10)
H130.39890.89090.92350.117*
C140.4087 (3)0.85679 (14)0.80277 (13)0.0712 (6)
H140.30960.85220.79470.085*
C150.4153 (2)0.73696 (11)0.54294 (10)0.0496 (4)
C160.4123 (2)0.66518 (10)0.48335 (10)0.0503 (4)
C170.5080 (3)0.66655 (14)0.41749 (13)0.0661 (5)
H170.57350.71050.41150.079*
C180.5044 (3)0.60158 (16)0.36082 (15)0.0778 (6)
H180.56820.60070.31610.093*
C190.4059 (3)0.53848 (14)0.37106 (15)0.0769 (6)
H190.40170.49340.33420.092*
C200.3140 (3)0.54377 (14)0.43719 (14)0.0771 (7)
H200.24620.50110.44330.093*
C210.1277 (2)0.65894 (16)0.71789 (14)0.0702 (5)
H210.10680.64860.66210.084*
C220.0228 (3)0.69407 (19)0.7686 (2)0.0900 (8)
H22−0.06770.70660.74690.108*
C230.0523 (3)0.71040 (17)0.85053 (19)0.0858 (8)
H23−0.01750.73470.88450.103*
C240.1850 (3)0.69072 (16)0.88228 (15)0.0768 (6)
H240.20500.70120.93810.092*
C250.2892 (2)0.65539 (14)0.83191 (13)0.0620 (5)
H250.37910.64230.85430.074*
C260.2624 (2)0.63902 (11)0.74854 (11)0.0518 (4)
C270.3778 (2)0.60045 (11)0.69460 (11)0.0550 (4)
H27A0.33470.58180.64270.066*
H27B0.41670.55130.72260.066*
C280.5014 (2)0.66113 (10)0.67490 (10)0.0475 (4)
H280.53480.68360.72840.057*
C290.6303 (2)0.61828 (12)0.63495 (11)0.0552 (4)
H29A0.607 (2)0.5961 (13)0.5795 (12)0.054 (5)*
H29B0.656 (2)0.5676 (14)0.6711 (13)0.058 (6)*
U11U22U33U12U13U23
O10.0663 (9)0.0981 (12)0.0593 (8)−0.0147 (9)0.0172 (7)−0.0167 (8)
N10.0679 (9)0.0455 (7)0.0516 (8)−0.0010 (7)−0.0131 (7)0.0021 (6)
N20.0545 (8)0.0394 (6)0.0449 (7)−0.0044 (6)0.0003 (6)0.0021 (5)
N30.0840 (12)0.0588 (9)0.0571 (9)−0.0182 (9)−0.0078 (8)−0.0028 (8)
C10.0696 (13)0.0496 (9)0.0703 (12)−0.0003 (9)−0.0161 (11)−0.0032 (9)
C20.0835 (15)0.0513 (11)0.0947 (17)0.0112 (11)−0.0284 (14)−0.0126 (11)
C30.115 (2)0.0438 (9)0.110 (2)0.0078 (12)−0.0412 (17)0.0066 (12)
C40.131 (2)0.0600 (13)0.0858 (16)−0.0023 (15)−0.0165 (18)0.0223 (12)
C50.1002 (18)0.0520 (10)0.0711 (12)0.0030 (11)−0.0102 (13)0.0109 (9)
C60.0619 (12)0.0431 (8)0.0626 (10)−0.0013 (8)−0.0200 (9)0.0003 (8)
C70.0562 (10)0.0428 (8)0.0530 (9)−0.0027 (8)−0.0081 (8)−0.0006 (7)
C80.0498 (9)0.0419 (7)0.0470 (8)−0.0029 (7)0.0014 (7)0.0001 (6)
C90.0668 (10)0.0383 (7)0.0446 (8)−0.0040 (7)−0.0009 (8)0.0027 (6)
C100.0750 (13)0.0635 (11)0.0654 (11)−0.0066 (10)−0.0133 (11)−0.0033 (10)
C110.118 (2)0.0734 (14)0.0907 (18)−0.0084 (15)−0.0504 (17)−0.0026 (14)
C120.199 (4)0.0574 (12)0.0574 (13)−0.0037 (19)−0.0422 (19)−0.0018 (10)
C130.172 (3)0.0718 (15)0.0484 (11)0.0041 (18)0.0144 (16)−0.0023 (10)
C140.0922 (16)0.0635 (11)0.0578 (11)−0.0013 (11)0.0134 (11)0.0014 (9)
C150.0545 (10)0.0452 (8)0.0492 (8)−0.0024 (8)−0.0041 (8)0.0019 (7)
C160.0595 (10)0.0438 (8)0.0478 (8)0.0027 (8)−0.0096 (8)0.0010 (7)
C170.0654 (12)0.0655 (11)0.0675 (11)−0.0032 (10)0.0017 (10)−0.0087 (9)
C180.0777 (14)0.0837 (15)0.0721 (13)0.0122 (13)0.0085 (12)−0.0193 (12)
C190.1013 (18)0.0572 (11)0.0721 (13)0.0065 (12)−0.0160 (14)−0.0179 (10)
C200.1032 (19)0.0589 (11)0.0693 (13)−0.0229 (13)−0.0153 (13)−0.0068 (10)
C210.0683 (13)0.0761 (13)0.0663 (12)−0.0071 (11)−0.0070 (10)0.0059 (10)
C220.0617 (14)0.0954 (18)0.113 (2)0.0056 (13)0.0016 (14)0.0151 (16)
C230.0765 (16)0.0768 (15)0.1042 (19)0.0024 (12)0.0317 (15)0.0014 (14)
C240.0943 (17)0.0745 (13)0.0616 (12)−0.0117 (13)0.0199 (12)−0.0041 (10)
C250.0652 (12)0.0650 (11)0.0557 (10)−0.0059 (9)0.0038 (9)0.0049 (9)
C260.0590 (10)0.0444 (8)0.0521 (9)−0.0102 (8)0.0057 (8)0.0076 (7)
C270.0706 (12)0.0403 (8)0.0542 (9)−0.0067 (8)0.0078 (9)0.0018 (7)
C280.0596 (10)0.0407 (7)0.0423 (7)0.0000 (7)0.0018 (7)0.0049 (6)
C290.0674 (11)0.0531 (9)0.0452 (8)0.0070 (9)0.0046 (8)0.0036 (8)
O1—H10.85 (3)C13—H130.9300
O1—C291.397 (3)C13—C141.383 (4)
N1—C71.375 (2)C14—H140.9300
N1—C151.312 (2)C15—C161.488 (2)
N2—C81.388 (2)C16—C171.380 (3)
N2—C151.360 (2)C17—H170.9300
N2—C281.485 (2)C17—C181.376 (3)
N3—C161.333 (3)C18—H180.9300
N3—C201.334 (3)C18—C191.366 (4)
C1—H1A0.9300C19—H190.9300
C1—C21.390 (3)C19—C201.364 (4)
C1—C61.376 (3)C20—H200.9300
C2—H20.9300C21—H210.9300
C2—C31.365 (4)C21—C221.385 (4)
C3—H30.9300C21—C261.379 (3)
C3—C41.371 (4)C22—H220.9300
C4—H40.9300C22—C231.368 (4)
C4—C51.385 (3)C23—H230.9300
C5—H50.9300C23—C241.368 (4)
C5—C61.392 (3)C24—H240.9300
C6—C71.476 (2)C24—C251.379 (3)
C7—C81.368 (2)C25—H250.9300
C8—C91.488 (2)C25—C261.386 (3)
C9—C101.384 (3)C26—C271.507 (3)
C9—C141.380 (3)C27—H27A0.9700
C10—H100.9300C27—H27B0.9700
C10—C111.383 (3)C27—C281.530 (2)
C11—H110.9300C28—H280.9800
C11—C121.366 (5)C28—C291.517 (3)
C12—H120.9300C29—H29A0.98 (2)
C12—C131.361 (5)C29—H29B1.02 (2)
C29—O1—H1110 (2)N3—C16—C15118.61 (17)
C15—N1—C7106.63 (14)N3—C16—C17123.39 (18)
C8—N2—C28124.76 (14)C17—C16—C15117.91 (17)
C15—N2—C8106.54 (14)C16—C17—H17120.7
C15—N2—C28128.55 (14)C18—C17—C16118.6 (2)
C16—N3—C20115.7 (2)C18—C17—H17120.7
C2—C1—H1A119.5C17—C18—H18120.4
C6—C1—H1A119.5C19—C18—C17119.1 (2)
C6—C1—C2121.0 (2)C19—C18—H18120.4
C1—C2—H2119.9C18—C19—H19121.1
C3—C2—C1120.3 (2)C20—C19—C18117.8 (2)
C3—C2—H2119.9C20—C19—H19121.1
C2—C3—H3120.3N3—C20—C19125.3 (2)
C2—C3—C4119.5 (2)N3—C20—H20117.3
C4—C3—H3120.3C19—C20—H20117.3
C3—C4—H4119.6C22—C21—H21119.4
C3—C4—C5120.7 (3)C26—C21—H21119.4
C5—C4—H4119.6C26—C21—C22121.2 (2)
C4—C5—H5119.9C21—C22—H22120.0
C4—C5—C6120.3 (2)C23—C22—C21120.1 (3)
C6—C5—H5119.9C23—C22—H22120.0
C1—C6—C5118.20 (19)C22—C23—H23120.2
C1—C6—C7122.82 (19)C24—C23—C22119.6 (3)
C5—C6—C7118.96 (19)C24—C23—H23120.2
N1—C7—C6119.65 (16)C23—C24—H24119.8
C8—C7—N1109.29 (15)C23—C24—C25120.3 (2)
C8—C7—C6131.02 (16)C25—C24—H24119.8
N2—C8—C9121.99 (15)C24—C25—H25119.4
C7—C8—N2106.12 (14)C24—C25—C26121.1 (2)
C7—C8—C9131.32 (15)C26—C25—H25119.4
C10—C9—C8118.72 (18)C21—C26—C25117.7 (2)
C14—C9—C8122.0 (2)C21—C26—C27122.11 (18)
C14—C9—C10119.3 (2)C25—C26—C27120.24 (19)
C9—C10—H10120.2C26—C27—H27A108.9
C11—C10—C9119.6 (3)C26—C27—H27B108.9
C11—C10—H10120.2C26—C27—C28113.23 (14)
C10—C11—H11119.6H27A—C27—H27B107.7
C12—C11—C10120.7 (3)C28—C27—H27A108.9
C12—C11—H11119.6C28—C27—H27B108.9
C11—C12—H12120.1N2—C28—C27112.40 (15)
C13—C12—C11119.8 (2)N2—C28—H28106.5
C13—C12—H12120.1N2—C28—C29111.11 (13)
C12—C13—H13119.8C27—C28—H28106.5
C12—C13—C14120.4 (3)C29—C28—C27113.22 (15)
C14—C13—H13119.8C29—C28—H28106.5
C9—C14—C13120.1 (3)O1—C29—C28109.65 (16)
C9—C14—H14119.9O1—C29—H29A113.2 (12)
C13—C14—H14119.9O1—C29—H29B108.3 (13)
N1—C15—N2111.42 (15)C28—C29—H29A111.7 (12)
N1—C15—C16121.31 (15)C28—C29—H29B107.3 (12)
N2—C15—C16127.12 (15)H29A—C29—H29B106.5 (16)
N1—C7—C8—N2−0.3 (2)C10—C9—C14—C130.8 (3)
N1—C7—C8—C9170.93 (19)C10—C11—C12—C13−0.5 (4)
N1—C15—C16—N3−116.1 (2)C11—C12—C13—C140.3 (4)
N1—C15—C16—C1760.7 (3)C12—C13—C14—C9−0.5 (4)
N2—C8—C9—C1077.2 (2)C14—C9—C10—C11−1.0 (3)
N2—C8—C9—C14−102.9 (2)C15—N1—C7—C6178.44 (19)
N2—C15—C16—N368.7 (3)C15—N1—C7—C80.6 (2)
N2—C15—C16—C17−114.5 (2)C15—N2—C8—C70.0 (2)
N2—C28—C29—O164.47 (19)C15—N2—C8—C9−172.28 (17)
N3—C16—C17—C18−1.9 (3)C15—N2—C28—C27−72.9 (2)
C1—C2—C3—C41.1 (4)C15—N2—C28—C2955.2 (2)
C1—C6—C7—N1147.0 (2)C15—C16—C17—C18−178.6 (2)
C1—C6—C7—C8−35.7 (3)C16—N3—C20—C19−0.2 (4)
C2—C1—C6—C50.9 (3)C16—C17—C18—C190.6 (4)
C2—C1—C6—C7−177.3 (2)C17—C18—C19—C200.8 (4)
C2—C3—C4—C5−0.4 (5)C18—C19—C20—N3−1.0 (4)
C3—C4—C5—C6−0.1 (5)C20—N3—C16—C15178.34 (19)
C4—C5—C6—C1−0.2 (4)C20—N3—C16—C171.7 (3)
C4—C5—C6—C7178.2 (2)C21—C22—C23—C24−0.9 (4)
C5—C6—C7—N1−31.3 (3)C21—C26—C27—C28108.7 (2)
C5—C6—C7—C8146.0 (2)C22—C21—C26—C250.0 (3)
C6—C1—C2—C3−1.4 (4)C22—C21—C26—C27179.8 (2)
C6—C7—C8—N2−177.9 (2)C22—C23—C24—C250.6 (4)
C6—C7—C8—C9−6.6 (4)C23—C24—C25—C260.0 (4)
C7—N1—C15—N2−0.6 (2)C24—C25—C26—C21−0.3 (3)
C7—N1—C15—C16−176.46 (17)C24—C25—C26—C27179.95 (18)
C7—C8—C9—C10−92.9 (3)C25—C26—C27—C28−71.5 (2)
C7—C8—C9—C1487.0 (3)C26—C21—C22—C230.6 (4)
C8—N2—C15—N10.4 (2)C26—C27—C28—N2−64.04 (19)
C8—N2—C15—C16175.96 (18)C26—C27—C28—C29169.04 (15)
C8—N2—C28—C27112.38 (18)C27—C28—C29—O1−167.93 (15)
C8—N2—C28—C29−119.57 (18)C28—N2—C8—C7175.71 (16)
C8—C9—C10—C11178.9 (2)C28—N2—C8—C93.4 (3)
C8—C9—C14—C13−179.1 (2)C28—N2—C15—N1−175.13 (17)
C9—C10—C11—C120.9 (4)C28—N2—C15—C160.4 (3)
D—H···AD—HH···AD···AD—H···A
C27—H27A···N30.972.423.277 (2)146
C22—H22···O1i0.932.543.350 (3)146
O1—H1···N1ii0.85 (3)1.94 (3)2.789 (2)174 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C27—H27A⋯N30.972.423.277 (2)146
C22—H22⋯O1i0.932.543.350 (3)146
O1—H1⋯N1ii0.85 (3)1.94 (3)2.789 (2)174 (3)

Symmetry codes: (i) ; (ii) .

  4 in total

1.  Chiral ionic liquids: synthesis and applications.

Authors:  Jie Ding; Daniel W Armstrong
Journal:  Chirality       Date:  2005-05-15       Impact factor: 2.437

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and characterization of novel chiral ionic liquids and investigation of their enantiomeric recognition properties.

Authors:  David K Bwambok; Hadi M Marwani; Vivian E Fernand; Sayo O Fakayode; Mark Lowry; Ioan Negulescu; Robert M Strongin; Isiah M Warner
Journal:  Chirality       Date:  2008-02       Impact factor: 2.437

4.  2-(4,5-Diphenyl-2-p-tolyl-1H-imidazol-1-yl)-3-phenyl-propan-1-ol.

Authors:  Yongmei Xiao; Liangru Yang; Kun He; Jinwei Yuan; Pu Mao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-07
  4 in total
  3 in total

1.  2-[2-(2-Nitro-phen-yl)-4,5-diphenyl-1H-imidazol-1-yl]-3-phenyl-propan-1-ol.

Authors:  Yizhen Li; Pu Mao; Yongmei Xiao; Liangru Yang; Lingbo Qu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-30

2.  (S)-4,5-Diphenyl-1-[1-phenyl-3-(phenyl-sulfan-yl)propan-2-yl]-2-(thio-phen-2-yl)-1H-imidazole.

Authors:  Jie Gao; Hongyan Wang; Liangru Yang; Yongmei Xiao; Pu Mao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-30

3.  2-[2-(5-Bromo-thio-phen-2-yl)-4,5-diphenyl-1H-imidazol-1-yl]-3-phenyl-propan-1-ol.

Authors:  Jie Gao; Liangru Yang; Wenpeng Mai; Jinwei Yuan; Pu Mao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-03
  3 in total

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