Literature DB >> 24412366

Regulation of TET protein stability by calpains.

Yu Wang1, Yi Zhang2.   

Abstract

DNA methylation at the fifth position of cytosine (5mC) is an important epigenetic modification that affects chromatin structure and gene expression. Recent studies have established a critical function of the Ten-eleven translocation (Tet) family of proteins in regulating DNA methylation dynamics. Three Tet genes have been identified in mammals, and they all encode for proteins capable of oxidizing 5mC as part of the DNA demethylation process. Although regulation of Tet expression at the transcriptional level is well documented, how TET proteins are regulated at posttranslational level is poorly understood. In this study, we report that all three TET proteins are direct substrates of calpains, a family of calcium-dependent proteases. Specifically, calpain1 mediates TET1 and TET2 turnover in mouse ESCs, and calpain2 regulates TET3 level during differentiation. This study provides evidence that TET proteins are subject to calpain-mediated degradation.
Copyright © 2014 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 24412366      PMCID: PMC4227594          DOI: 10.1016/j.celrep.2013.12.031

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  31 in total

Review 1.  Structure, activation, and biology of calpain.

Authors:  Koichi Suzuki; Shoji Hata; Yukiko Kawabata; Hiroyuki Sorimachi
Journal:  Diabetes       Date:  2004-02       Impact factor: 9.461

Review 2.  Calpain function in the differentiation of mesenchymal stem cells.

Authors:  Yukiko Yajima; Seiichi Kawashima
Journal:  Biol Chem       Date:  2002-05       Impact factor: 3.915

Review 3.  Calpain and caspase: can you tell the difference?

Authors:  K K Wang
Journal:  Trends Neurosci       Date:  2000-01       Impact factor: 13.837

Review 4.  Calpains and disease.

Authors:  Mayana Zatz; Alessandra Starling
Journal:  N Engl J Med       Date:  2005-06-09       Impact factor: 91.245

Review 5.  Spectrin and calpain: a 'target' and a 'sniper' in the pathology of neuronal cells.

Authors:  A Czogalla; A F Sikorski
Journal:  Cell Mol Life Sci       Date:  2005-09       Impact factor: 9.261

6.  Generation of a defined and uniform population of CNS progenitors and neurons from mouse embryonic stem cells.

Authors:  Miriam Bibel; Jens Richter; Emmanuel Lacroix; Yves-Alain Barde
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

7.  Caspase activity mediates the differentiation of embryonic stem cells.

Authors:  Jun Fujita; Ana M Crane; Marlon K Souza; Marion Dejosez; Michael Kyba; Richard A Flavell; James A Thomson; Thomas P Zwaka
Journal:  Cell Stem Cell       Date:  2008-06-05       Impact factor: 24.633

Review 8.  Caspases: the executioners of apoptosis.

Authors:  G M Cohen
Journal:  Biochem J       Date:  1997-08-15       Impact factor: 3.857

9.  LCX, leukemia-associated protein with a CXXC domain, is fused to MLL in acute myeloid leukemia with trilineage dysplasia having t(10;11)(q22;q23).

Authors:  Ryoichi Ono; Tomohiko Taki; Takeshi Taketani; Masafumi Taniwaki; Hajime Kobayashi; Yasuhide Hayashi
Journal:  Cancer Res       Date:  2002-07-15       Impact factor: 12.701

10.  DNA targeting specificity of RNA-guided Cas9 nucleases.

Authors:  Patrick D Hsu; David A Scott; Joshua A Weinstein; F Ann Ran; Silvana Konermann; Vineeta Agarwala; Yinqing Li; Eli J Fine; Xuebing Wu; Ophir Shalem; Thomas J Cradick; Luciano A Marraffini; Gang Bao; Feng Zhang
Journal:  Nat Biotechnol       Date:  2013-07-21       Impact factor: 54.908

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  49 in total

1.  Methylcytosine dioxygenase TET3 interacts with thyroid hormone nuclear receptors and stabilizes their association to chromatin.

Authors:  Wenyue Guan; Romain Guyot; Jacques Samarut; Frédéric Flamant; Jiemin Wong; Karine Cécile Gauthier
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-17       Impact factor: 11.205

2.  Vpr Targets TET2 for Degradation by CRL4VprBP E3 Ligase to Sustain IL-6 Expression and Enhance HIV-1 Replication.

Authors:  Lei Lv; Qi Wang; Yanping Xu; Li-Chung Tsao; Tadashi Nakagawa; Haitao Guo; Lishan Su; Yue Xiong
Journal:  Mol Cell       Date:  2018-06-07       Impact factor: 17.970

3.  Experience-dependent DNA methylation regulates plasticity in the developing visual cortex.

Authors:  Paola Tognini; Debora Napoli; Jonida Tola; Davide Silingardi; Floriana Della Ragione; Maurizio D'Esposito; Tommaso Pizzorusso
Journal:  Nat Neurosci       Date:  2015-05-25       Impact factor: 24.884

4.  Harnessing Hematopoietic Stem Cell Low Intracellular Calcium Improves Their Maintenance In Vitro.

Authors:  Larry L Luchsinger; Alexandros Strikoudis; Nichole M Danzl; Erin C Bush; Michael O Finlayson; Prakash Satwani; Megan Sykes; Masayuki Yazawa; Hans-Willem Snoeck
Journal:  Cell Stem Cell       Date:  2019-06-06       Impact factor: 24.633

5.  Acetylation Enhances TET2 Function in Protecting against Abnormal DNA Methylation during Oxidative Stress.

Authors:  Yang W Zhang; Zhihong Wang; Wenbing Xie; Yi Cai; Limin Xia; Hariharan Easwaran; Jianjun Luo; Ray-Whay Chiu Yen; Yana Li; Stephen B Baylin
Journal:  Mol Cell       Date:  2017-01-19       Impact factor: 17.970

6.  Distinct cellular and molecular environments support aging-related DNA methylation changes in the substantia nigra.

Authors:  Maria Fasolino; Shuo Liu; Yinsheng Wang; Zhaolan Zhou
Journal:  Epigenomics       Date:  2016-12-16       Impact factor: 4.778

Review 7.  DNA methylation dynamics in neurogenesis.

Authors:  Zhiqin Wang; Beisha Tang; Yuquan He; Peng Jin
Journal:  Epigenomics       Date:  2016-03-07       Impact factor: 4.778

8.  Protein Phosphotyrosine Phosphatase 1B (PTP1B) in Calpain-dependent Feedback Regulation of Vascular Endothelial Growth Factor Receptor (VEGFR2) in Endothelial Cells: IMPLICATIONS IN VEGF-DEPENDENT ANGIOGENESIS AND DIABETIC WOUND HEALING.

Authors:  Yixuan Zhang; Qiang Li; Ji Youn Youn; Hua Cai
Journal:  J Biol Chem       Date:  2016-11-21       Impact factor: 5.157

9.  The epithelial-to-mesenchymal transition activator ZEB1 initiates a prometastatic competing endogenous RNA network.

Authors:  Xiaochao Tan; Priyam Banerjee; Xin Liu; Jiang Yu; Don L Gibbons; Ping Wu; Kenneth L Scott; Lixia Diao; Xiaofeng Zheng; Jing Wang; Ali Jalali; Milind Suraokar; Junya Fujimoto; Carmen Behrens; Xiuping Liu; Chang-Gong Liu; Chad J Creighton; Ignacio I Wistuba; Jonathan M Kurie
Journal:  J Clin Invest       Date:  2018-02-26       Impact factor: 14.808

Review 10.  Connections between TET proteins and aberrant DNA modification in cancer.

Authors:  Yun Huang; Anjana Rao
Journal:  Trends Genet       Date:  2014-08-14       Impact factor: 11.639

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