| Literature DB >> 24402125 |
Yang Zhang1, Zhen Zhu2, Qi Xu3, Guohong Chen4.
Abstract
Primers based on the cDNA sequence of the goose growth hormone (GH) gene in GenBank were designed to amplify exon 2 of the GH gene in Huoyan goose. A total of 552 individuals were brooded in one batch and raised in Liaoning and Jiangsu Provinces, China. Single nucleotide polymorphisms (SNPs) of exon 2 in the GH gene were detected by the polymerase chain reaction (single strand conformation polymorphism method). Homozygotes were subsequently cloned, sequenced and analyzed. Two SNP mutations were detected, and 10 genotypes (referred to as AA, BB, CC, DD, AB, AC, AD, BC, BD and CD) were obtained. Allele D was predominant, and the frequencies of the 10 genotypes fit the Hardy-Weinberg equilibrium in the male, female and whole populations according to the chi-square test. Based on SNP types, the 10 genotypes were combined into three main genotypes. Multiple comparisons were carried out between different genotypes and production traits when the geese were 10 weeks old. Some indices of production performance were significantly (p < 0.05) associated with the genotype. Particularly, geese with genotype AB or BB were highly productive. Thus, these genotypes may serve as selection markers for production traits in Huoyan geese.Entities:
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Year: 2014 PMID: 24402125 PMCID: PMC3907831 DOI: 10.3390/ijms15010670
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1.Electrophoresis patterns of exon 2 of the growth hormone (GH) gene of Huoyan goose obtained by polymerase chain reaction-single strand conformation polymorphism (PCR-SSCP). Band 1: genotype BB; Band 2: genotype CC; Bands 3, 6, 10 and 20: genotype DD; Bands 4, 8, 13 and 18: genotype BC; Bands 5, 7 and 12: genotype AB; Band 9: genotype AD; Bands 11, 14, 15, 16 and 17: genotype CD; Band 19: genotype AC.
Figure 2.Mutation nucleotide sequence alignment of four homozygous genotypes.
Figure 3.Amino acid sequence comparison of four genotypes. The 25th amino acid residue of the AA and CC genotypes is alanine (A), while that of the BB and DD genotypes is valine (V).
Genotypic and allelic frequencies at the 39th and 74th bp of exon 2 of the GH gene (n = 552). Part A, Genotypic frequencies; Part B, Allelic frequencies.
| Populations (Sample Size) | Male (275) | Female (277) | Total Group (552) |
|---|---|---|---|
| Part A. Genotype | |||
|
| |||
| AA | 0.0182 (5) | 0.0361 (10) | 0.0272 (15) |
| AB | 0.0873 (24) | 0.0758 (21) | 0.0815 (45) |
| AC | 0.1382 (38) | 0.1300 (36) | 0.1341 (74) |
| AD | 0.1055 (29) | 0.1588 (44) | 0.1322 (73) |
| BB | 0.0255 (7) | 0.0397 (11) | 0.0326 (18) |
| BC | 0.1273 (35) | 0.0866 (24) | 0.1069 (59) |
| BD | 0.1709 (47) | 0.1227 (34) | 0.1467 (81) |
| CC | 0.0582 (16) | 0.0686 (19) | 0.0634 (35) |
| CD | 0.1345 (37) | 0.1805 (50) | 0.1576 (87) |
| DD | 0.1345 (37) | 0.1011 (28) | 0.1178 (65) |
|
| |||
| Part B. Allele | |||
|
| |||
| A | 0.1836 | 0.2184 | 0.2011 |
| B | 0.2182 | 0.1823 | 0.2002 |
| C | 0.2582 | 0.2671 | 0.2627 |
| D | 0.3400 | 0.3321 | 0.3361 |
| χ2 | 0.0600 | 0.0093 | 0.0170 |
Body weight and other body traits of genotypes of exon 2 of the GH gene. BW, body weight; BIL, inclined body length; DL, dive length; SC, shank circumference; CW, chest width; CD, chest depth; SL, sternum length; SHL, shank length. Data represent the least-squares mean ± SD.
| Traits | Genotypes (sample size) | |||||
|---|---|---|---|---|---|---|
|
| ||||||
| AA ( | AB ( | BB ( | AA (♀, 65) | AB (♀, 139) | BB (♀, 73) | |
| BW (g) | 2815.27 ± 321.42 | 3066.61 ± 320.29 | 2951.79 ± 322.01 | 2560.49 ± 280.82 | 2646.65 ± 251.18 | 2761.82 ± 283.31 |
| BIL (cm) | 29.35 ± 2.14 | 29.92 ± 1.99 | 29.51 ± 1.82 | 27.99 ± 1.83 | 28.36 ± 1.72 | 28.84 ± 1.73 |
| DL (cm) | 66.62 ± 3.43 | 67.99 ± 3.44 | 66.63 ±3.41 | 63.43 ± 3.34 | 64.07 ± 3.04 | 65.01 ± 2.61 |
| SC (cm) | 4.63 ± 0.32 | 4.96 ± 0.67 | 4.79 ± 0.82 | 4.48 ± 0.25 | 4.57 ± 0.24 | 4.58 ± 0.26 |
| CW (cm) | 10.81 ± 0.83 | 11.10 ± 0.83 | 10.87 ± 0.78 | 10.53 ± 0.83 | 10.59 ± 0.81 | 10.57 ± 0.84 |
| CD (cm) | 7.13 ± 0.52 | 7.19 ± 0.65 | 7.02 ± 0.54 | 6.96 ± 0.47 | 7.06 ± 0.51 | 7.20 ± 0.48 |
| SL (cm) | 11.92 ± 1.15 | 12.46 ± 1.30 | 12.10 ± 1.20 | 11.54 ± 1.27 | 11.87 ± 0.99 | 12.11 ± 0.79 |
| SHL (cm) | 10.79 ± 0.52 | 10.95 ± 0.45 | 10.85 ± 0.54 | 10.40 ± 0.55 | 10.36 ± 0.41 | 10.47 ± 0.41 |
Means with different superscripts are significantly different (p < 0.05).
Means with different superscripts are significantly different (p < 0.01).
♂, male population; ♀, female population.
Carcass traits of geese of different genotypes of exon 2 of the GH gene. Data represent the least-squares mean ± SD. CW, carcass weight; SEW, semi-eviscerated weight: EW, eviscerated weight; BLW, breast and leg muscle weight; HW, heart weight; LW, live weight; GSW, gland muscular stomach weight; AW, abdominal fat weight.
| Traits | Genotypes (sample size) | |||||
|---|---|---|---|---|---|---|
|
| ||||||
| AA ( | AB ( | BB ( | AA (♀, 26) | AB (♀, 39) | BB (♀, 16) | |
| CW (g) | 2520.35 ± 81.88 | 2754.11 ± 43.19 | 2591.40 ± 63.50 | 2270.86 ± 46.75 | 2430.19 ± 36.83 | 2518.40 ± 43.32 |
| SEW (g) | 2222.61 ± 67.64 | 2439.32 ± 40.87 | 2343.92 ± 53.39 | 2033.60 ± 40.92 | 2331.60 ± 147.94 | 2230.59 ± 46.24 |
| EW (g) | 1974.14 ± 62.83 | 2163.79 ± 39.57 | 2074.64 ± 48.97 | 1805.63 ± 37.27 | 2080.31 ± 147.43 | 1989.69 ± 43.37 |
| BLW (g) | 279.34 ± 13.86 | 286.16 ± 6.87 | 285.10 ± 8.78 | 268.00 ± 10.90 | 296.37 ± 12.60 | 287.33 ± 12.61 |
| HW (g) | 21.37 ± 0.65 | 23.64 ± 0.48 | 23.19 ± 0.60 | 20.96 ± 0.83 | 21.500 ± 54 | 22.66 ± 0.92 |
| LW (g) | 78.99±3.66 | 82.07 ± 2.29 | 83.34 ± 3.38 | 68.13 ± 2.94 | 77.69 ± 2.18 | 76.04 ± 3.10 |
| GSW (g) | 99.87 ± 2.69 | 115.56 ± 2.53 | 102.17 ± 2.93 | 95.93 ± 3.13 | 97.18 ± 2.37 | 102.73 ± 2.88 |
| AW (g) | 50.60 ± 6.48 | 54.24 ± 4.46 | 60.56 ± 4.65 | 42.92 ± 4.34 | 54.90 ± 4.97 | 39.45 ± 5.94 |
Means with different superscripts are significantly different (p < 0.05).
Means with different superscripts are significantly different (p < 0.01).
♂, male population; ♀, female population.
Meat quality of genotypes of exon 2 of the GH gene. Data are expressed as the least-squares mean ± SE.
| Traits | Genotypes (sample size) | |||
|---|---|---|---|---|
|
| ||||
| AA (31) | AB (63) | BB (49) | ||
| Breast muscle | pH | 5.91 ± 0.19 | 5.93 ± 0.21 | 5.88 ± 0.18 |
| TD | 45.36 ± 17.43 | 45.78 ± 13.68 | 43.67 ± 21.15 | |
| HW | 0.30 ± 0.06 | 0.26 ± 0.08 | 0.30 ± 0.10 | |
| Leg muscle | pH | 5.99 ± 0.20 | 6.01 ± 0.25 | 5.98 ± 0.32 |
| TD | 31.82 ± 9.65 | 30.04 ± 11.70 | 29.88 ± 9.33 | |
| HW | 0.29 ± 0.05 | 0.27 ± 0.06 | 0.30 ± 0.06 | |
Means with different superscripts are significantly different (p < 0.05).
TD, tenderness; HW, water-holding capacity.
Figure 4.Paraffin section of breast muscle in 10-week-old geese. Muscle fibers were cross-cut. The section was formalin-fixed, paraffin-embedded and counterstained with Mayer’s hematoxylin. In the section, red denotes single muscle fibers and white denotes in-muscle fat. Magnification: 400×.
Figure 5.Paraffin section of leg muscle in 10-week-old geese. Muscle fibers were cross-cut. The section was formalin-fixed, paraffin-embedded and counterstained with Mayer’s hematoxylin. In the section, red denotes single muscle fibers and white denotes in-muscle fat. Magnification: 400×.
Cross-sectional areas of muscle fibers. BM, breast muscle; LM, leg muscle. ♂, male population; ♀, female population.
| Traitsμm2 | Genotypes (sample size) | |||||
|---|---|---|---|---|---|---|
|
| ||||||
| AA (♂, 12) | AB (♂, 38) | BB (♂, 33) | AA (♀, 26) | AB (♀, 39) | BB (♀, 16) | |
| BM | 274.46 ± 52.13 | 330.56 ± 59.13 | 310.46 ± 57.43 | 235.57 ± 49.39 | 241.56 ± 65.83 | 236.94 ± 51.83 |
| LM | 620.97 ± 146.80 | 670.05 ± 197.46 | 650.84 ± 143.73 | 409.48 ± 75.86 | 607.14 ± 165.18 | 478.07 ± 92.54 |