Literature DB >> 24385579

Electron flow in multiheme bacterial cytochromes is a balancing act between heme electronic interaction and redox potentials.

Marian Breuer1, Kevin M Rosso, Jochen Blumberger.   

Abstract

The naturally widespread process of electron transfer from metal reducing bacteria to extracellular solid metal oxides entails unique biomolecular machinery optimized for long-range electron transport. To perform this function efficiently, microorganisms have adapted multiheme c-type cytochromes to arrange heme cofactors into wires that cooperatively span the cellular envelope, transmitting electrons along distances greater than 100 Å. Implications and opportunities for bionanotechnological device design are self-evident. However, at the molecular level, how these proteins shuttle electrons along their heme wires, navigating intraprotein intersections and interprotein interfaces efficiently, remains a mystery thus far inaccessible to experiment. To shed light on this critical topic, we carried out extensive quantum mechanics/molecular mechanics simulations to calculate stepwise heme-to-heme electron transfer rates in the recently crystallized outer membrane deca-heme cytochrome MtrF. By solving a master equation for electron hopping, we estimate an intrinsic, maximum possible electron flux through solvated MtrF of 10(4)-10(5) s(-1), consistent with recently measured rates for the related multiheme protein complex MtrCAB. Intriguingly, our calculations show that the rapid electron transport through MtrF is the result of a clear correlation between heme redox potential and the strength of electronic coupling along the wire: thermodynamically uphill steps occur only between electronically well-connected stacked heme pairs. This observation suggests that the protein evolved to harbor low-potential hemes without slowing down electron flow. These findings are particularly profound in light of the apparently well-conserved staggered cross-heme wire structural motif in functionally related outer membrane proteins.

Entities:  

Keywords:  density functional theory; respiration

Mesh:

Substances:

Year:  2014        PMID: 24385579      PMCID: PMC3896160          DOI: 10.1073/pnas.1316156111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

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Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

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Authors:  Yong Duan; Chun Wu; Shibasish Chowdhury; Mathew C Lee; Guoming Xiong; Wei Zhang; Rong Yang; Piotr Cieplak; Ray Luo; Taisung Lee; James Caldwell; Junmei Wang; Peter Kollman
Journal:  J Comput Chem       Date:  2003-12       Impact factor: 3.376

3.  Kinetics of the terminal electron transfer step in cytochrome c oxidase.

Authors:  Varomyalin Tipmanee; Jochen Blumberger
Journal:  J Phys Chem B       Date:  2012-02-07       Impact factor: 2.991

4.  Prediction of reorganization free energies for biological electron transfer: a comparative study of Ru-modified cytochromes and a 4-helix bundle protein.

Authors:  Varomyalin Tipmanee; Harald Oberhofer; Mina Park; Kwang S Kim; Jochen Blumberger
Journal:  J Am Chem Soc       Date:  2010-11-05       Impact factor: 15.419

5.  Structure of a bacterial cell surface decaheme electron conduit.

Authors:  Thomas A Clarke; Marcus J Edwards; Andrew J Gates; Andrea Hall; Gaye F White; Justin Bradley; Catherine L Reardon; Liang Shi; Alexander S Beliaev; Matthew J Marshall; Zheming Wang; Nicholas J Watmough; James K Fredrickson; John M Zachara; Julea N Butt; David J Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

6.  Rate enhancement of bacterial extracellular electron transport involves bound flavin semiquinones.

Authors:  Akihiro Okamoto; Kazuhito Hashimoto; Kenneth H Nealson; Ryuhei Nakamura
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-01       Impact factor: 11.205

7.  The crystal structure of the extracellular 11-heme cytochrome UndA reveals a conserved 10-heme motif and defined binding site for soluble iron chelates.

Authors:  Marcus J Edwards; Andrea Hall; Liang Shi; James K Fredrickson; John M Zachara; Julea N Butt; David J Richardson; Thomas A Clarke
Journal:  Structure       Date:  2012-06-07       Impact factor: 5.006

8.  Engineering of a synthetic electron conduit in living cells.

Authors:  Heather M Jensen; Aaron E Albers; Konstantin R Malley; Yuri Y Londer; Bruce E Cohen; Brett A Helms; Peter Weigele; Jay T Groves; Caroline M Ajo-Franklin
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-18       Impact factor: 11.205

9.  Selection of a variant of Geobacter sulfurreducens with enhanced capacity for current production in microbial fuel cells.

Authors:  Hana Yi; Kelly P Nevin; Byoung-Chan Kim; Ashely E Franks; Anna Klimes; Leonard M Tender; Derek R Lovley
Journal:  Biosens Bioelectron       Date:  2009-05-14       Impact factor: 10.618

10.  Analysis of structural MtrC models based on homology with the crystal structure of MtrF.

Authors:  Marcus J Edwards; James K Fredrickson; John M Zachara; David J Richardson; Thomas A Clarke
Journal:  Biochem Soc Trans       Date:  2012-12-01       Impact factor: 5.407

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  28 in total

1.  Structure and redox properties of the diheme electron carrier cytochrome c4 from Pseudomonas aeruginosa.

Authors:  Jessica M Carpenter; Fangfang Zhong; Michael J Ragusa; Ricardo O Louro; Deborah A Hogan; Ekaterina V Pletneva
Journal:  J Inorg Biochem       Date:  2019-10-22       Impact factor: 4.155

2.  Biological charge transfer via flickering resonance.

Authors:  Yuqi Zhang; Chaoren Liu; Alexander Balaeff; Spiros S Skourtis; David N Beratan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-25       Impact factor: 11.205

Review 3.  Extracellular electron transfer mechanisms between microorganisms and minerals.

Authors:  Liang Shi; Hailiang Dong; Gemma Reguera; Haluk Beyenal; Anhuai Lu; Juan Liu; Han-Qing Yu; James K Fredrickson
Journal:  Nat Rev Microbiol       Date:  2016-08-30       Impact factor: 60.633

4.  Crystal structures of native cytochrome c6 from Thermosynechococcus elongatus in two different space groups and implications for its oligomerization.

Authors:  Sven Falke; Christian Feiler; Henry Chapman; Iosifina Sarrou
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2020-08-20       Impact factor: 1.056

5.  Ultrastructure of Shewanella oneidensis MR-1 nanowires revealed by electron cryotomography.

Authors:  Poorna Subramanian; Sahand Pirbadian; Mohamed Y El-Naggar; Grant J Jensen
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-19       Impact factor: 11.205

6.  The Roles of Biofilm Conductivity and Donor Substrate Kinetics in a Mixed-Culture Biofilm Anode.

Authors:  Hyung-Sool Lee; Bipro Ranjan Dhar; Junyeong An; Bruce E Rittmann; Hodon Ryu; Jorge W Santo Domingo; Hao Ren; Junseok Chae
Journal:  Environ Sci Technol       Date:  2016-11-15       Impact factor: 9.028

7.  Shewanella oneidensis as a living electrode for controlled radical polymerization.

Authors:  Gang Fan; Christopher M Dundas; Austin J Graham; Nathaniel A Lynd; Benjamin K Keitz
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-16       Impact factor: 11.205

8.  Photoinduced hole hopping through tryptophans in proteins.

Authors:  Stanislav Záliš; Jan Heyda; Filip Šebesta; Jay R Winkler; Harry B Gray; Antonín Vlček
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-16       Impact factor: 11.205

9.  Assessing Possible Mechanisms of Micrometer-Scale Electron Transfer in Heme-Free Geobacter sulfurreducens Pili.

Authors:  Xuyan Ru; Peng Zhang; David N Beratan
Journal:  J Phys Chem B       Date:  2019-06-10       Impact factor: 2.991

10.  Outer membrane cytochromes/flavin interactions in Shewanella spp.-A molecular perspective.

Authors:  Sofia Babanova; Ivana Matanovic; Jose Cornejo; Orianna Bretschger; Kenneth Nealson; Plamen Atanassov
Journal:  Biointerphases       Date:  2017-05-31       Impact factor: 2.456

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