Literature DB >> 21606337

Structure of a bacterial cell surface decaheme electron conduit.

Thomas A Clarke1, Marcus J Edwards, Andrew J Gates, Andrea Hall, Gaye F White, Justin Bradley, Catherine L Reardon, Liang Shi, Alexander S Beliaev, Matthew J Marshall, Zheming Wang, Nicholas J Watmough, James K Fredrickson, John M Zachara, Julea N Butt, David J Richardson.   

Abstract

Some bacterial species are able to utilize extracellular mineral forms of iron and manganese as respiratory electron acceptors. In Shewanella oneidensis this involves decaheme cytochromes that are located on the bacterial cell surface at the termini of trans-outer-membrane electron transfer conduits. The cell surface cytochromes can potentially play multiple roles in mediating electron transfer directly to insoluble electron sinks, catalyzing electron exchange with flavin electron shuttles or participating in extracellular intercytochrome electron exchange along "nanowire" appendages. We present a 3.2-Å crystal structure of one of these decaheme cytochromes, MtrF, that allows the spatial organization of the 10 hemes to be visualized for the first time. The hemes are organized across four domains in a unique crossed conformation, in which a staggered 65-Å octaheme chain transects the length of the protein and is bisected by a planar 45-Å tetraheme chain that connects two extended Greek key split β-barrel domains. The structure provides molecular insight into how reduction of insoluble substrate (e.g., minerals), soluble substrates (e.g., flavins), and cytochrome redox partners might be possible in tandem at different termini of a trifurcated electron transport chain on the cell surface.

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Year:  2011        PMID: 21606337      PMCID: PMC3111324          DOI: 10.1073/pnas.1017200108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  The 2.8 A structure of hydroxylamine oxidoreductase from a nitrifying chemoautotrophic bacterium, Nitrosomonas europaea.

Authors:  N Igarashi; H Moriyama; T Fujiwara; Y Fukumori; N Tanaka
Journal:  Nat Struct Biol       Date:  1997-04

2.  Shewanella oneidensis MR-1 uses overlapping pathways for iron reduction at a distance and by direct contact under conditions relevant for Biofilms.

Authors:  Douglas P Lies; Maria E Hernandez; Andreas Kappler; Randall E Mielke; Jeffrey A Gralnick; Dianne K Newman
Journal:  Appl Environ Microbiol       Date:  2005-08       Impact factor: 4.792

3.  Structure and spectroscopy of the periplasmic cytochrome c nitrite reductase from Escherichia coli.

Authors:  Vicki A Bamford; Hayley C Angove; Harriet E Seward; Andrew J Thomson; Jeffrey A Cole; Julea N Butt; Andrew M Hemmings; David J Richardson
Journal:  Biochemistry       Date:  2002-03-05       Impact factor: 3.162

4.  Purification and magneto-optical spectroscopic characterization of cytoplasmic membrane and outer membrane multiheme c-type cytochromes from Shewanella frigidimarina NCIMB400.

Authors:  S J Field; P S Dobbin; M R Cheesman; N J Watmough; A J Thomson; D J Richardson
Journal:  J Biol Chem       Date:  2000-03-24       Impact factor: 5.157

5.  Engineering of a synthetic electron conduit in living cells.

Authors:  Heather M Jensen; Aaron E Albers; Konstantin R Malley; Yuri Y Londer; Bruce E Cohen; Brett A Helms; Peter Weigele; Jay T Groves; Caroline M Ajo-Franklin
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-18       Impact factor: 11.205

6.  Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms.

Authors:  Yuri A Gorby; Svetlana Yanina; Jeffrey S McLean; Kevin M Rosso; Dianne Moyles; Alice Dohnalkova; Terry J Beveridge; In Seop Chang; Byung Hong Kim; Kyung Shik Kim; David E Culley; Samantha B Reed; Margaret F Romine; Daad A Saffarini; Eric A Hill; Liang Shi; Dwayne A Elias; David W Kennedy; Grigoriy Pinchuk; Kazuya Watanabe; Shun'ichi Ishii; Bruce Logan; Kenneth H Nealson; Jim K Fredrickson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-18       Impact factor: 11.205

7.  Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1.

Authors:  J S McLean; G E Pinchuk; O V Geydebrekht; C L Bilskis; B A Zakrajsek; E A Hill; D A Saffarini; M F Romine; Y A Gorby; J K Fredrickson; A S Beliaev
Journal:  Environ Microbiol       Date:  2008-04-10       Impact factor: 5.491

8.  Kinetic characterization of OmcA and MtrC, terminal reductases involved in respiratory electron transfer for dissimilatory iron reduction in Shewanella oneidensis MR-1.

Authors:  Daniel E Ross; Susan L Brantley; Ming Tien
Journal:  Appl Environ Microbiol       Date:  2009-06-19       Impact factor: 4.792

9.  The crystal structure of the pentahaem c-type cytochrome NrfB and characterization of its solution-state interaction with the pentahaem nitrite reductase NrfA.

Authors:  Thomas A Clarke; Jeffrey A Cole; David J Richardson; Andrew M Hemmings
Journal:  Biochem J       Date:  2007-08-15       Impact factor: 3.857

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  75 in total

1.  Electron transfer pathways in a multiheme cytochrome MtrF.

Authors:  Hiroshi C Watanabe; Yuki Yamashita; Hiroshi Ishikita
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

2.  Crystallization and preliminary X-ray crystallographic studies of the outer membrane cytochrome OmcA from Shewanella oneidensis MR-1.

Authors:  S J Tomanicek; A Johs; M S Sawhney; L Shi; L Liang
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-12-24

Review 3.  Dissimilatory reduction of extracellular electron acceptors in anaerobic respiration.

Authors:  Katrin Richter; Marcus Schicklberger; Johannes Gescher
Journal:  Appl Environ Microbiol       Date:  2011-12-16       Impact factor: 4.792

4.  Surface multiheme c-type cytochromes from Thermincola potens and implications for respiratory metal reduction by Gram-positive bacteria.

Authors:  Hans K Carlson; Anthony T Iavarone; Amita Gorur; Boon Siang Yeo; Rosalie Tran; Ryan A Melnyk; Richard A Mathies; Manfred Auer; John D Coates
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

5.  On the evolution and physiology of cable bacteria.

Authors:  Kasper U Kjeldsen; Lars Schreiber; Casper A Thorup; Thomas Boesen; Jesper T Bjerg; Tingting Yang; Morten S Dueholm; Steffen Larsen; Nils Risgaard-Petersen; Marta Nierychlo; Markus Schmid; Andreas Bøggild; Jack van de Vossenberg; Jeanine S Geelhoed; Filip J R Meysman; Michael Wagner; Per H Nielsen; Lars Peter Nielsen; Andreas Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-19       Impact factor: 11.205

6.  Chemolithotrophic processes in the bacterial communities on the surface of mineral-enriched biochars.

Authors:  Jun Ye; Stephen D Joseph; Mukan Ji; Shaun Nielsen; David R G Mitchell; Scott Donne; Joseph Horvat; Jianli Wang; Paul Munroe; Torsten Thomas
Journal:  ISME J       Date:  2017-02-07       Impact factor: 10.302

7.  Rate enhancement of bacterial extracellular electron transport involves bound flavin semiquinones.

Authors:  Akihiro Okamoto; Kazuhito Hashimoto; Kenneth H Nealson; Ryuhei Nakamura
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-01       Impact factor: 11.205

8.  Physical constraints on charge transport through bacterial nanowires.

Authors:  Nicholas F Polizzi; Spiros S Skourtis; David N Beratan
Journal:  Faraday Discuss       Date:  2012       Impact factor: 4.008

9.  Genomic plasticity enables a secondary electron transport pathway in Shewanella oneidensis.

Authors:  M Schicklberger; G Sturm; J Gescher
Journal:  Appl Environ Microbiol       Date:  2012-12-07       Impact factor: 4.792

10.  Rapid electron exchange between surface-exposed bacterial cytochromes and Fe(III) minerals.

Authors:  Gaye F White; Zhi Shi; Liang Shi; Zheming Wang; Alice C Dohnalkova; Matthew J Marshall; James K Fredrickson; John M Zachara; Julea N Butt; David J Richardson; Thomas A Clarke
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-28       Impact factor: 11.205

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