Literature DB >> 24371142

The drug diazaborine blocks ribosome biogenesis by inhibiting the AAA-ATPase Drg1.

Mathias Loibl1, Isabella Klein, Michael Prattes, Claudia Schmidt, Lisa Kappel, Gertrude Zisser, Anna Gungl, Elmar Krieger, Brigitte Pertschy, Helmut Bergler.   

Abstract

The drug diazaborine is the only known inhibitor of ribosome biogenesis and specifically blocks large subunit formation in eukaryotic cells. However, the target of this drug and the mechanism of inhibition were unknown. Here we identify the AAA-ATPase Drg1 as a target of diazaborine. Inhibitor binding into the second AAA domain of Drg1 requires ATP loading and results in inhibition of ATP hydrolysis in this site. As a consequence the physiological activity of Drg1, i.e. the release of Rlp24 from pre-60S particles, is blocked, and further progression of cytoplasmic preribosome maturation is prevented. Our results identify the first target of an inhibitor of ribosome biogenesis and provide the mechanism of inhibition of a key step in large ribosomal subunit formation.

Entities:  

Keywords:  AAA-ATPases; ATPases; Diazaborine; Drug Action; Enzyme Inhibitors; Protein-Drug Interactions; Ribosome Assembly; Small Molecule Inhibitor

Mesh:

Substances:

Year:  2013        PMID: 24371142      PMCID: PMC3924260          DOI: 10.1074/jbc.M113.536110

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  32 in total

Review 1.  The tandem affinity purification (TAP) method: a general procedure of protein complex purification.

Authors:  O Puig; F Caspary; G Rigaut; B Rutz; E Bouveret; E Bragado-Nilsson; M Wilm; B Séraphin
Journal:  Methods       Date:  2001-07       Impact factor: 3.608

2.  Increasing the precision of comparative models with YASARA NOVA--a self-parameterizing force field.

Authors:  Elmar Krieger; Günther Koraimann; Gert Vriend
Journal:  Proteins       Date:  2002-05-15

3.  A graph-theory algorithm for rapid protein side-chain prediction.

Authors:  Adrian A Canutescu; Andrew A Shelenkov; Roland L Dunbrack
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

4.  Errors in protein structures.

Authors:  R W Hooft; G Vriend; C Sander; E E Abola
Journal:  Nature       Date:  1996-05-23       Impact factor: 49.962

5.  Affinity purification of histidine-tagged proteins.

Authors:  J Schmitt; H Hess; H G Stunnenberg
Journal:  Mol Biol Rep       Date:  1993-10       Impact factor: 2.316

6.  A study of the structure-activity relationship for diazaborine inhibition of Escherichia coli enoyl-ACP reductase.

Authors:  C W Levy; C Baldock; A J Wallace; S Sedelnikova; R C Viner; J M Clough; A R Stuitje; A R Slabas; D W Rice; J B Rafferty
Journal:  J Mol Biol       Date:  2001-05-25       Impact factor: 5.469

7.  2-Anilino-4-aryl-1,3-thiazole inhibitors of valosin-containing protein (VCP or p97).

Authors:  Matthew G Bursavich; Daniel P Parker; J Adam Willardsen; Zhong-Hua Gao; Thaylon Davis; Kirill Ostanin; Rosann Robinson; Ashley Peterson; Daniel M Cimbora; Ju-Fen Zhu; Burt Richards
Journal:  Bioorg Med Chem Lett       Date:  2010-01-21       Impact factor: 2.823

8.  AFG2, an essential gene in yeast, encodes a new member of the Sec18p, Pas1p, Cdc48p, TBP-1 family of putative ATPases.

Authors:  P E Thorsness; K H White; W C Ong
Journal:  Yeast       Date:  1993-11       Impact factor: 3.239

9.  Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8.

Authors:  Elmar Krieger; Keehyoung Joo; Jinwoo Lee; Jooyoung Lee; Srivatsan Raman; James Thompson; Mike Tyka; David Baker; Kevin Karplus
Journal:  Proteins       Date:  2009

10.  Rlp24 activates the AAA-ATPase Drg1 to initiate cytoplasmic pre-60S maturation.

Authors:  Lisa Kappel; Mathias Loibl; Gertrude Zisser; Isabella Klein; Gernot Fruhmann; Christof Gruber; Stefan Unterweger; Gerald Rechberger; Brigitte Pertschy; Helmut Bergler
Journal:  J Cell Biol       Date:  2012-11-26       Impact factor: 10.539

View more
  25 in total

1.  Chemical modulators of ribosome biogenesis as biological probes.

Authors:  Jonathan M Stokes; Eric D Brown
Journal:  Nat Chem Biol       Date:  2015-11-17       Impact factor: 15.040

2.  The dynamic assembly of distinct RNA polymerase I complexes modulates rDNA transcription.

Authors:  Eva Torreira; Jaime Alegrio Louro; Irene Pazos; Noelia González-Polo; David Gil-Carton; Ana Garcia Duran; Sébastien Tosi; Oriol Gallego; Olga Calvo; Carlos Fernández-Tornero
Journal:  Elife       Date:  2017-03-06       Impact factor: 8.140

3.  Mutations in SPATA5 Are Associated with Microcephaly, Intellectual Disability, Seizures, and Hearing Loss.

Authors:  Akemi J Tanaka; Megan T Cho; Francisca Millan; Jane Juusola; Kyle Retterer; Charuta Joshi; Dmitriy Niyazov; Adolfo Garnica; Edward Gratz; Matthew Deardorff; Alisha Wilkins; Xilma Ortiz-Gonzalez; Katherine Mathews; Karin Panzer; Eva Brilstra; Koen L I van Gassen; Catharina M L Volker-Touw; Ellen van Binsbergen; Nara Sobreira; Ada Hamosh; Dianalee McKnight; Kristin G Monaghan; Wendy K Chung
Journal:  Am J Hum Genet       Date:  2015-08-20       Impact factor: 11.025

Review 4.  Using chemical inhibitors to probe AAA protein conformational dynamics and cellular functions.

Authors:  Jonathan B Steinman; Tarun M Kapoor
Journal:  Curr Opin Chem Biol       Date:  2019-03-23       Impact factor: 8.822

5.  Inhibiting C-4 Methyl Sterol Oxidase with Novel Diazaborines to Target Fungal Plant Pathogens.

Authors:  Sang Hu Kim; Luke Steere; Yong-Kang Zhang; Cari McGregor; Chris Hahne; Yasheen Zhou; Chunliang Liu; Yan Cai; Haibo Zhou; Xuefei Chen; Emily Puumala; Dustin Duncan; Gerard D Wright; C Tony Liu; Luke Whitesell; Leah E Cowen
Journal:  ACS Chem Biol       Date:  2022-05-18       Impact factor: 4.634

Review 6.  Ribosome assembly coming into focus.

Authors:  Sebastian Klinge; John L Woolford
Journal:  Nat Rev Mol Cell Biol       Date:  2019-02       Impact factor: 94.444

7.  Structural basis for inhibition of the AAA-ATPase Drg1 by diazaborine.

Authors:  Michael Prattes; Irina Grishkovskaya; Victor-Valentin Hodirnau; Ingrid Rössler; Isabella Klein; Christina Hetzmannseder; Gertrude Zisser; Christian C Gruber; Karl Gruber; David Haselbach; Helmut Bergler
Journal:  Nat Commun       Date:  2021-06-09       Impact factor: 14.919

8.  YphC and YsxC GTPases assist the maturation of the central protuberance, GTPase associated region and functional core of the 50S ribosomal subunit.

Authors:  Xiaodan Ni; Joseph H Davis; Nikhil Jain; Aida Razi; Samir Benlekbir; Andrew G McArthur; John L Rubinstein; Robert A Britton; James R Williamson; Joaquin Ortega
Journal:  Nucleic Acids Res       Date:  2016-08-02       Impact factor: 16.971

9.  A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning.

Authors:  Koray Kırlı; Samir Karaca; Heinz Jürgen Dehne; Matthias Samwer; Kuan Ting Pan; Christof Lenz; Henning Urlaub; Dirk Görlich
Journal:  Elife       Date:  2015-12-17       Impact factor: 8.140

10.  Potent, Reversible, and Specific Chemical Inhibitors of Eukaryotic Ribosome Biogenesis.

Authors:  Shigehiro A Kawashima; Zhen Chen; Yuki Aoi; Anupam Patgiri; Yuki Kobayashi; Paul Nurse; Tarun M Kapoor
Journal:  Cell       Date:  2016-09-22       Impact factor: 41.582

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.