Literature DB >> 24361104

The bacterial cytoplasm has glass-like properties and is fluidized by metabolic activity.

Bradley R Parry1, Ivan V Surovtsev2, Matthew T Cabeen1, Corey S O'Hern3, Eric R Dufresne4, Christine Jacobs-Wagner5.   

Abstract

The physical nature of the bacterial cytoplasm is poorly understood even though it determines cytoplasmic dynamics and hence cellular physiology and behavior. Through single-particle tracking of protein filaments, plasmids, storage granules, and foreign particles of different sizes, we find that the bacterial cytoplasm displays properties that are characteristic of glass-forming liquids and changes from liquid-like to solid-like in a component size-dependent fashion. As a result, the motion of cytoplasmic components becomes disproportionally constrained with increasing size. Remarkably, cellular metabolism fluidizes the cytoplasm, allowing larger components to escape their local environment and explore larger regions of the cytoplasm. Consequently, cytoplasmic fluidity and dynamics dramatically change as cells shift between metabolically active and dormant states in response to fluctuating environments. Our findings provide insight into bacterial dormancy and have broad implications to our understanding of bacterial physiology, as the glassy behavior of the cytoplasm impacts all intracellular processes involving large components.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 24361104      PMCID: PMC3956598          DOI: 10.1016/j.cell.2013.11.028

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  45 in total

1.  Scaling the microrheology of living cells.

Authors:  B Fabry; G N Maksym; J P Butler; M Glogauer; D Navajas; J J Fredberg
Journal:  Phys Rev Lett       Date:  2001-09-13       Impact factor: 9.161

2.  The bacterial cytoskeleton: an intermediate filament-like function in cell shape.

Authors:  Nora Ausmees; Jeffrey R Kuhn; Christine Jacobs-Wagner
Journal:  Cell       Date:  2003-12-12       Impact factor: 41.582

3.  Rearrangements in hard-sphere glasses under oscillatory shear strain.

Authors:  G Petekidis; A Moussaïd; P N Pusey
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-11-26

4.  Nonthermal ATP-dependent fluctuations contribute to the in vivo motion of chromosomal loci.

Authors:  Stephanie C Weber; Andrew J Spakowitz; Julie A Theriot
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-19       Impact factor: 11.205

5.  Chromatin dynamics in interphase cells revealed by tracking in a two-photon excitation microscope.

Authors:  Valeria Levi; QiaoQiao Ruan; Matthew Plutz; Andrew S Belmont; Enrico Gratton
Journal:  Biophys J       Date:  2005-09-08       Impact factor: 4.033

6.  Bacterial cell curvature through mechanical control of cell growth.

Authors:  Matthew T Cabeen; Godefroid Charbon; Waldemar Vollmer; Petra Born; Nora Ausmees; Douglas B Weibel; Christine Jacobs-Wagner
Journal:  EMBO J       Date:  2009-03-12       Impact factor: 11.598

7.  Protein mobility in the cytoplasm of Escherichia coli.

Authors:  M B Elowitz; M G Surette; P E Wolf; J B Stock; S Leibler
Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

Review 8.  Entropy as the driver of chromosome segregation.

Authors:  Suckjoon Jun; Andrew Wright
Journal:  Nat Rev Microbiol       Date:  2010-08       Impact factor: 60.633

9.  Tailoring the flow of soft glasses by soft additives.

Authors:  E Zaccarelli; C Mayer; A Asteriadi; C N Likos; F Sciortino; J Roovers; H Iatrou; N Hadjichristidis; P Tartaglia; H Löwen; D Vlassopoulos
Journal:  Phys Rev Lett       Date:  2005-12-20       Impact factor: 9.161

10.  Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo.

Authors:  S Cayley; B A Lewis; H J Guttman; M T Record
Journal:  J Mol Biol       Date:  1991-11-20       Impact factor: 5.469

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  194 in total

1.  Polyphosphate granule biogenesis is temporally and functionally tied to cell cycle exit during starvation in Pseudomonas aeruginosa.

Authors:  Lisa R Racki; Elitza I Tocheva; Michael G Dieterle; Meaghan C Sullivan; Grant J Jensen; Dianne K Newman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

2.  Evidence for a DNA-relay mechanism in ParABS-mediated chromosome segregation.

Authors:  Hoong Chuin Lim; Ivan Vladimirovich Surovtsev; Bruno Gabriel Beltran; Fang Huang; Jörg Bewersdorf; Christine Jacobs-Wagner
Journal:  Elife       Date:  2014-05-23       Impact factor: 8.140

3.  Elementary Growth Modes provide a molecular description of cellular self-fabrication.

Authors:  Daan H de Groot; Josephus Hulshof; Bas Teusink; Frank J Bruggeman; Robert Planqué
Journal:  PLoS Comput Biol       Date:  2020-01-27       Impact factor: 4.475

4.  Phage DNA dynamics in cells with different fates.

Authors:  Qiuyan Shao; Alexander Hawkins; Lanying Zeng
Journal:  Biophys J       Date:  2015-04-21       Impact factor: 4.033

5.  Cytoplasmic dynamics reveals two modes of nucleoid-dependent mobility.

Authors:  Stella Stylianidou; Nathan J Kuwada; Paul A Wiggins
Journal:  Biophys J       Date:  2014-12-02       Impact factor: 4.033

6.  Diffusion within the cytoplasm: a mesoscale model of interacting macromolecules.

Authors:  Fabio Trovato; Valentina Tozzini
Journal:  Biophys J       Date:  2014-12-02       Impact factor: 4.033

Review 7.  RNA localization in bacteria.

Authors:  Avi-ad Avraam Buskila; Shanmugapriya Kannaiah; Orna Amster-Choder
Journal:  RNA Biol       Date:  2014-10-31       Impact factor: 4.652

Review 8.  Connecting the dots: the effects of macromolecular crowding on cell physiology.

Authors:  Márcio A Mourão; Joe B Hakim; Santiago Schnell
Journal:  Biophys J       Date:  2014-12-16       Impact factor: 4.033

9.  Emergence of antibiotic resistance from multinucleated bacterial filaments.

Authors:  Julia Bos; Qiucen Zhang; Saurabh Vyawahare; Elizabeth Rogers; Susan M Rosenberg; Robert H Austin
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-09       Impact factor: 11.205

10.  A Tick Antivirulence Protein Potentiates Antibiotics against Staphylococcus aureus.

Authors:  Nabil M Abraham; Lei Liu; Brandon L Jutras; Kristen Murfin; Ali Acar; Timur O Yarovinsky; Erica Sutton; Martin Heisig; Christine Jacobs-Wagner; Erol Fikrig
Journal:  Antimicrob Agents Chemother       Date:  2017-06-27       Impact factor: 5.191

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