Literature DB >> 21958168

RNA and DNA complexes with hemin [Fe(III) heme] are efficient peroxidases and peroxygenases: how do they do it and what does it mean?

Dipankar Sen1, Lester C H Poon.   

Abstract

Guanine-rich RNAs and DNAs from chromosomal telomeres and elsewhere that fold into guanine quadruplexes (G-quadruplexes), are found to complex tightly with porphyrins such as N-methylmesoporphyrin IX (NMM) and hemin [Fe(III) heme]. By themselves, these DNAs and RNAs are found to be efficient catalysts for porphyrin metallation. When complexed with hemin, under physiological conditions, these nucleic acids display robust peroxidase (one-electron oxidation), as well as peroxygenase (two-electron oxidation, or oxygen transfer) activity. These surprising catalytic properties, that frequently match the catalytic performance of natural peroxidase and P450 monooxygenase enzymes, have been the subject of significant mechanistic analysis, as well as having found utility in a wide range of biosensing and other applications. This review summarizes recent insights into a surprising yet fundamental property of many RNAs and DNAs, a property with undoubted ramifications for cellular oxidative disease, de novo hemoenzyme design, and our understanding of the evolution of early biocatalytic systems.

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Year:  2011        PMID: 21958168     DOI: 10.3109/10409238.2011.618220

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  33 in total

1.  Overlapping but distinct: a new model for G-quadruplex biochemical specificity.

Authors:  Martin Volek; Sofia Kolesnikova; Katerina Svehlova; Pavel Srb; Ráchel Sgallová; Tereza Streckerová; Juan A Redondo; Václav Veverka; Edward A Curtis
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

Review 2.  DNA as sensors and imaging agents for metal ions.

Authors:  Yu Xiang; Yi Lu
Journal:  Inorg Chem       Date:  2013-12-20       Impact factor: 5.165

3.  In the Beginning was a Mutualism - On the Origin of Translation.

Authors:  Marko Vitas; Andrej Dobovišek
Journal:  Orig Life Evol Biosph       Date:  2018-04-30       Impact factor: 1.950

4.  A heme•DNAzyme activated by hydrogen peroxide catalytically oxidizes thioethers by direct oxygen atom transfer rather than by a Compound I-like intermediate.

Authors:  Nisreen M Shumayrikh; Jeffrey J Warren; Andrew J Bennet; Dipankar Sen
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

5.  Biochemical and Biophysical Understanding of Metal Ion Selectivity of DNAzymes.

Authors:  Kevin Hwang; Parisa Hosseinzadeh; Yi Lu
Journal:  Inorganica Chim Acta       Date:  2016-04-23       Impact factor: 2.545

6.  RNA with iron(II) as a cofactor catalyses electron transfer.

Authors:  Chiaolong Hsiao; I-Chun Chou; C Denise Okafor; Jessica C Bowman; Eric B O'Neill; Shreyas S Athavale; Anton S Petrov; Nicholas V Hud; Roger M Wartell; Stephen C Harvey; Loren Dean Williams
Journal:  Nat Chem       Date:  2013-05-19       Impact factor: 24.427

7.  Expanding DNAzyme Functionality through Enzyme Cascades with Applications in Single Nucleotide Repair and Tunable DNA-Directed Assembly of Nanomaterials.

Authors:  Yu Xiang; Zidong Wang; Hang Xing; Yi Lu
Journal:  Chem Sci       Date:  2012-09-21       Impact factor: 9.825

8.  Human ribosomal G-quadruplexes regulate heme bioavailability.

Authors:  Santi Mestre-Fos; Chieri Ito; Courtney M Moore; Amit R Reddi; Loren Dean Williams
Journal:  J Biol Chem       Date:  2020-08-13       Impact factor: 5.157

Review 9.  The regulation and functions of DNA and RNA G-quadruplexes.

Authors:  Dhaval Varshney; Jochen Spiegel; Katherine Zyner; David Tannahill; Shankar Balasubramanian
Journal:  Nat Rev Mol Cell Biol       Date:  2020-04-20       Impact factor: 94.444

Review 10.  One ring to bring them all and in the darkness bind them: The trafficking of heme without deliverers.

Authors:  Ian G Chambers; Mathilda M Willoughby; Iqbal Hamza; Amit R Reddi
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2020-10-03       Impact factor: 4.739

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