Literature DB >> 24337300

The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution.

Joseph F Ryan1, Kevin Pang, Christine E Schnitzler, Anh-Dao Nguyen, R Travis Moreland, David K Simmons, Bernard J Koch, Warren R Francis, Paul Havlak, Stephen A Smith, Nicholas H Putnam, Steven H D Haddock, Casey W Dunn, Tyra G Wolfsberg, James C Mullikin, Mark Q Martindale, Andreas D Baxevanis.   

Abstract

An understanding of ctenophore biology is critical for reconstructing events that occurred early in animal evolution. Toward this goal, we have sequenced, assembled, and annotated the genome of the ctenophore Mnemiopsis leidyi. Our phylogenomic analyses of both amino acid positions and gene content suggest that ctenophores rather than sponges are the sister lineage to all other animals. Mnemiopsis lacks many of the genes found in bilaterian mesodermal cell types, suggesting that these cell types evolved independently. The set of neural genes in Mnemiopsis is similar to that of sponges, indicating that sponges may have lost a nervous system. These results present a newly supported view of early animal evolution that accounts for major losses and/or gains of sophisticated cell types, including nerve and muscle cells.

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Year:  2013        PMID: 24337300      PMCID: PMC3920664          DOI: 10.1126/science.1242592

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  46 in total

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2.  Broad phylogenomic sampling improves resolution of the animal tree of life.

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Journal:  Nature       Date:  2008-03-05       Impact factor: 49.962

3.  The development of bioluminescence in the ctenophore Mnemiopsis leidyi.

Authors:  G Freeman; G T Reynolds
Journal:  Dev Biol       Date:  1973-03       Impact factor: 3.582

4.  The dynamic genome of Hydra.

Authors:  Jarrod A Chapman; Ewen F Kirkness; Oleg Simakov; Steven E Hampson; Therese Mitros; Thomas Weinmaier; Thomas Rattei; Prakash G Balasubramanian; Jon Borman; Dana Busam; Kathryn Disbennett; Cynthia Pfannkoch; Nadezhda Sumin; Granger G Sutton; Lakshmi Devi Viswanathan; Brian Walenz; David M Goodstein; Uffe Hellsten; Takeshi Kawashima; Simon E Prochnik; Nicholas H Putnam; Shengquiang Shu; Bruce Blumberg; Catherine E Dana; Lydia Gee; Dennis F Kibler; Lee Law; Dirk Lindgens; Daniel E Martinez; Jisong Peng; Philip A Wigge; Bianca Bertulat; Corina Guder; Yukio Nakamura; Suat Ozbek; Hiroshi Watanabe; Konstantin Khalturin; Georg Hemmrich; André Franke; René Augustin; Sebastian Fraune; Eisuke Hayakawa; Shiho Hayakawa; Mamiko Hirose; Jung Shan Hwang; Kazuho Ikeo; Chiemi Nishimiya-Fujisawa; Atshushi Ogura; Toshio Takahashi; Patrick R H Steinmetz; Xiaoming Zhang; Roland Aufschnaiter; Marie-Kristin Eder; Anne-Kathrin Gorny; Willi Salvenmoser; Alysha M Heimberg; Benjamin M Wheeler; Kevin J Peterson; Angelika Böttger; Patrick Tischler; Alexander Wolf; Takashi Gojobori; Karin A Remington; Robert L Strausberg; J Craig Venter; Ulrich Technau; Bert Hobmayer; Thomas C G Bosch; Thomas W Holstein; Toshitaka Fujisawa; Hans R Bode; Charles N David; Daniel S Rokhsar; Robert E Steele
Journal:  Nature       Date:  2010-03-14       Impact factor: 49.962

5.  Reassessing embryogenesis in the Ctenophora: the inductive role of e1 micromeres in organizing ctene row formation in the 'mosaic' embryo, Mnemiopsis leidyi.

Authors:  M Q Martindale; J Q Henry
Journal:  Development       Date:  1997-05       Impact factor: 6.868

6.  Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships.

Authors:  K S Pick; H Philippe; F Schreiber; D Erpenbeck; D J Jackson; P Wrede; M Wiens; A Alié; B Morgenstern; M Manuel; G Wörheide
Journal:  Mol Biol Evol       Date:  2010-04-08       Impact factor: 16.240

7.  The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.

Authors:  Nicole King; M Jody Westbrook; Susan L Young; Alan Kuo; Monika Abedin; Jarrod Chapman; Stephen Fairclough; Uffe Hellsten; Yoh Isogai; Ivica Letunic; Michael Marr; David Pincus; Nicholas Putnam; Antonis Rokas; Kevin J Wright; Richard Zuzow; William Dirks; Matthew Good; David Goodstein; Derek Lemons; Wanqing Li; Jessica B Lyons; Andrea Morris; Scott Nichols; Daniel J Richter; Asaf Salamov; J G I Sequencing; Peer Bork; Wendell A Lim; Gerard Manning; W Todd Miller; William McGinnis; Harris Shapiro; Robert Tjian; Igor V Grigoriev; Daniel Rokhsar
Journal:  Nature       Date:  2008-02-14       Impact factor: 49.962

8.  The Trichoplax genome and the nature of placozoans.

Authors:  Mansi Srivastava; Emina Begovic; Jarrod Chapman; Nicholas H Putnam; Uffe Hellsten; Takeshi Kawashima; Alan Kuo; Therese Mitros; Asaf Salamov; Meredith L Carpenter; Ana Y Signorovitch; Maria A Moreno; Kai Kamm; Jane Grimwood; Jeremy Schmutz; Harris Shapiro; Igor V Grigoriev; Leo W Buss; Bernd Schierwater; Stephen L Dellaporta; Daniel S Rokhsar
Journal:  Nature       Date:  2008-08-21       Impact factor: 49.962

9.  Developmental expression of homeobox genes in the ctenophore Mnemiopsis leidyi.

Authors:  Kevin Pang; Mark Q Martindale
Journal:  Dev Genes Evol       Date:  2008-05-27       Impact factor: 2.116

10.  Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes.

Authors:  Christine E Schnitzler; Kevin Pang; Meghan L Powers; Adam M Reitzel; Joseph F Ryan; David Simmons; Takashi Tada; Morgan Park; Jyoti Gupta; Shelise Y Brooks; Robert W Blakesley; Shozo Yokoyama; Steven Hd Haddock; Mark Q Martindale; Andreas D Baxevanis
Journal:  BMC Biol       Date:  2012-12-21       Impact factor: 7.431

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  235 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-18       Impact factor: 11.205

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Review 4.  A new paradigm for animal symmetry.

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5.  The ancestral gene repertoire of animal stem cells.

Authors:  Alexandre Alié; Tetsutaro Hayashi; Itsuro Sugimura; Michaël Manuel; Wakana Sugano; Akira Mano; Nori Satoh; Kiyokazu Agata; Noriko Funayama
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6.  Genomic data do not support comb jellies as the sister group to all other animals.

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Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

Review 7.  Where is my mind? How sponges and placozoans may have lost neural cell types.

Authors:  Joseph F Ryan; Marta Chiodin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-12-19       Impact factor: 6.237

Review 8.  An option space for early neural evolution.

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Review 9.  Probabilistic models of eukaryotic evolution: time for integration.

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Review 10.  Functions of crystallins in and out of lens: roles in elongated and post-mitotic cells.

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