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Literature DB >> 24321704

Identification of vaccine-derived polioviruses using dual-stage real-time RT-PCR.

David R Kilpatrick¹, Karen Ching², Jane Iber², Qi Chen², Su-Ju Yang², Lina De², A J Williams², Mark Mandelbaum², Hong Sun², M Steven Oberste², Olen M Kew².

Abstract

Vaccine-derived polioviruses (VDPVs) are associated with polio outbreaks and prolonged infections in individuals with primary immunodeficiencies. VDPV-specific PCR assays for each of the three Sabin oral poliovirus vaccine (OPV) strains were developed, targeting sequences within the VP1 capsid region that are selected for during replication of OPV in the human intestine. Over 2400 Sabin-related isolates and identified 755 VDPVs were screened. Sensitivity of all assays was 100%, while specificity was 100% for serotypes 1 and 3, and 76% for serotype 2. The assays permit rapid, sensitive identification of OPV-related viruses and flag programmatically important isolates for further characterization by genomic sequencing. Published by Elsevier B.V.

Entities: Chemical Disease Gene Species

Keywords: Poliovirus; Real-time RT-PCR; VDPV; Vaccine-derived poliovirus

Mesh：

Substances：
Poliovirus Vaccines

Year: 2013 PMID： 24321704 PMCID： PMC8215842 DOI： 10.1016/j.jviromet.2013.11.017

Source DB: PubMed Journal: J Virol Methods ISSN： 0166-0934 Impact factor: 2.014

31 in total

Review 1. Vaccine-derived polioviruses and the endgame strategy for global polio eradication.

Authors: Olen M Kew; Roland W Sutter; Esther M de Gourville; Walter R Dowdle; Mark A Pallansch
Journal: Annu Rev Microbiol Date: 2005 Impact factor: 15.500

2. The natural genomic variability of poliovirus analyzed by a restriction fragment length polymorphism assay.

Authors: J Balanant; S Guillot; A Candrea; F Delpeyroux; R Crainic
Journal: Virology Date: 1991-10 Impact factor: 3.616

3. Rapid group-, serotype-, and vaccine strain-specific identification of poliovirus isolates by real-time reverse transcription-PCR using degenerate primers and probes containing deoxyinosine residues.

Authors: David R Kilpatrick; Chen-Fu Yang; Karen Ching; Annelet Vincent; Jane Iber; Ray Campagnoli; Mark Mandelbaum; Lina De; Su-Ju Yang; Allan Nix; Olen M Kew
Journal: J Clin Microbiol Date: 2009-04-22 Impact factor: 5.948

4. Serotype-specific identification of polioviruses by PCR using primers containing mixed-base or deoxyinosine residues at positions of codon degeneracy.

Authors: D R Kilpatrick; B Nottay; C F Yang; S J Yang; E Da Silva; S Peñaranda; M Pallansch; O Kew
Journal: J Clin Microbiol Date: 1998-02 Impact factor: 5.948

5. Outbreak of poliomyelitis in Hispaniola associated with circulating type 1 vaccine-derived poliovirus.

Authors: Olen Kew; Victoria Morris-Glasgow; Mauricio Landaverde; Cara Burns; Jing Shaw; Zacarías Garib; Jean André; Elizabeth Blackman; C Jason Freeman; Jaume Jorba; Roland Sutter; Gina Tambini; Linda Venczel; Cristina Pedreira; Fernando Laender; Hiroyuki Shimizu; Tetsuo Yoneyama; Tatsuo Miyamura; Harrie van Der Avoort; M Steven Oberste; David Kilpatrick; Stephen Cochi; Mark Pallansch; Ciro de Quadros
Journal: Science Date: 2002-03-14 Impact factor: 47.728

6. Failure to clear persistent vaccine-derived neurovirulent poliovirus infection in an immunodeficient man.

Authors: Calman MacLennan; Glynis Dunn; Aarnoud P Huissoon; Dinakantha S Kumararatne; Javier Martin; Paula O'Leary; Ronald A Thompson; Husam Osman; Philip Wood; Philip Minor; David J Wood; Deenan Pillay
Journal: Lancet Date: 2004-05-08 Impact factor: 79.321

7. Multiple independent emergences of type 2 vaccine-derived polioviruses during a large outbreak in northern Nigeria.

Authors: Cara C Burns; Jing Shaw; Jaume Jorba; David Bukbuk; Festus Adu; Nicksy Gumede; Muhammed Ali Pate; Emmanuel Ade Abanida; Alex Gasasira; Jane Iber; Qi Chen; Annelet Vincent; Paul Chenoweth; Elizabeth Henderson; Kathleen Wannemuehler; Asif Naeem; Rifqiyah Nur Umami; Yorihiro Nishimura; Hiroyuki Shimizu; Marycelin Baba; Adekunle Adeniji; A J Williams; David R Kilpatrick; M Steven Oberste; Steven G Wassilak; Oyewale Tomori; Mark A Pallansch; Olen Kew
Journal: J Virol Date: 2013-02-13 Impact factor: 5.103

8. Laboratory surveillance for wild and vaccine-derived polioviruses - worldwide, January 2008-June 2009.

Authors:
Journal: MMWR Morb Mortal Wkly Rep Date: 2009-09-04 Impact factor: 17.586

9. Recombinant vaccine-derived poliovirus in Madagascar.

Authors: Dominique Rousset; Mala Rakoto-Andrianarivelo; Richter Razafindratsimandresy; Bakolalao Randriamanalina; Sophie Guillot; Jean Balanant; Philippe Mauclère; Francis Delpeyroux
Journal: Emerg Infect Dis Date: 2003-07 Impact factor: 6.883

10. Recombination between polioviruses and co-circulating Coxsackie A viruses: role in the emergence of pathogenic vaccine-derived polioviruses.

Authors: Sophie Jegouic; Marie-Line Joffret; Claire Blanchard; Franck B Riquet; Céline Perret; Isabelle Pelletier; Florence Colbere-Garapin; Mala Rakoto-Andrianarivelo; Francis Delpeyroux
Journal: PLoS Pathog Date: 2009-05-01 Impact factor: 6.823

20 in total

1. Comparison of ELISA and dual stage real time RT-PCR to differentiate Sabin like and non-Sabin like poliovirus isolates.

Authors: Nirmal Kaundal; Purva Sarkate; Charu Prakash; Narayan Rishi
Journal: Virusdisease Date: 2017-05-25

2. Sabin Vaccine Reversion in the Field: a Comprehensive Analysis of Sabin-Like Poliovirus Isolates in Nigeria.

Authors: Michael Famulare; Stewart Chang; Jane Iber; Kun Zhao; Johnson A Adeniji; David Bukbuk; Marycelin Baba; Matthew Behrend; Cara C Burns; M Steven Oberste
Journal: J Virol Date: 2015-10-14 Impact factor: 5.103

3. Field Performance of Two Methods for Detection of Poliovirus in Wastewater Samples, Mexico 2016-2017.

Authors: Concepción F Estívariz; Elda E Pérez-Sánchez; Anita Bahena; Cara C Burns; Howard E Gary; Herlinda García-Lozano; Gloria Rey-Benito; Silvia Peñaranda; Katy V Castillo-Montufar; Raúl S Nava-Acosta; John Scott Meschke; M Steven Oberste; Irma Lopez-Martínez; José A Díaz-Quiñonez
Journal: Food Environ Virol Date: 2019-09-30 Impact factor: 2.778

4. Development of an efficient entire-capsid-coding-region amplification method for direct detection of poliovirus from stool extracts.

Authors: Minetaro Arita; David R Kilpatrick; Tomofumi Nakamura; Cara C Burns; David Bukbuk; Soji B Oderinde; M Steven Oberste; Olen M Kew; Mark A Pallansch; Hiroyuki Shimizu
Journal: J Clin Microbiol Date: 2014-10-22 Impact factor: 5.948

5. Diagnostic Assay Development for Poliovirus Eradication.

Authors: Nancy Gerloff; Hong Sun; Mark Mandelbaum; Chelsea Maher; W Allan Nix; Sohail Zaidi; Shahzad Shaukat; Lerato Seakamela; Uma P Nalavade; Deepa K Sharma; M Steven Oberste; Everardo Vega
Journal: J Clin Microbiol Date: 2018-01-24 Impact factor: 5.948

6. Detection of vaccine-derived poliovirus circulation by environmental surveillance in the absence of clinical cases.

Authors: John Kofi Odoom; Evangeline Obodai; Gifty Boateng; Stanley Diamenu; Keren Attiku; Patrick Avevor; Ewurabena Duker; Bismarck Boahene; Miriam Eshun; Emmanuel Gberbie; Joseph Kwadwo Larbi Opare
Journal: Hum Vaccin Immunother Date: 2021-01-30 Impact factor: 3.452