Literature DB >> 19386844

Rapid group-, serotype-, and vaccine strain-specific identification of poliovirus isolates by real-time reverse transcription-PCR using degenerate primers and probes containing deoxyinosine residues.

David R Kilpatrick1, Chen-Fu Yang, Karen Ching, Annelet Vincent, Jane Iber, Ray Campagnoli, Mark Mandelbaum, Lina De, Su-Ju Yang, Allan Nix, Olen M Kew.   

Abstract

We have adapted our previously described poliovirus diagnostic reverse transcription-PCR (RT-PCR) assays to a real-time RT-PCR (rRT-PCR) format. Our highly specific assays and rRT-PCR reagents are designed for use in the WHO Global Polio Laboratory Network for rapid and large-scale identification of poliovirus field isolates.

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Year:  2009        PMID： 19386844      PMCID： PMC2691077          DOI： 10.1128/JCM.00702-09

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  16 in total

1.  Genotype-specific in vitro amplification of sequences of the wild type 3 polioviruses from Mexico and Guatemala.

Authors:  C F Yang; L De; S J Yang; J Ruiz Gómez; J R Cruz; B P Holloway; M A Pallansch; O M Kew
Journal:  Virus Res       Date:  1992-08       Impact factor: 3.303

2.  Detection and identification of vaccine-related polioviruses by the polymerase chain reaction.

Authors:  C F Yang; L De; B P Holloway; M A Pallansch; O M Kew
Journal:  Virus Res       Date:  1991-07       Impact factor: 3.303

3.  Informal consultation of the Global Polio Laboratory Network--June 2008.

Authors: 
Journal:  Wkly Epidemiol Rec       Date:  2008-07-25

4.  Serotype-specific identification of polioviruses by PCR using primers containing mixed-base or deoxyinosine residues at positions of codon degeneracy.

Authors:  D R Kilpatrick; B Nottay; C F Yang; S J Yang; E Da Silva; S Peñaranda; M Pallansch; O Kew
Journal:  J Clin Microbiol       Date:  1998-02       Impact factor: 5.948

5.  Group-specific identification of polioviruses by PCR using primers containing mixed-base or deoxyinosine residue at positions of codon degeneracy.

Authors:  D R Kilpatrick; B Nottay; C F Yang; S J Yang; M N Mulders; B P Holloway; M A Pallansch; O M Kew
Journal:  J Clin Microbiol       Date:  1996-12       Impact factor: 5.948

Review 6.  Real-time reverse transcription PCR (qRT-PCR) and its potential use in clinical diagnosis.

Authors:  Stephen A Bustin; Reinhold Mueller
Journal:  Clin Sci (Lond)       Date:  2005-10       Impact factor: 6.124

7.  Comparative study of five methods for intratypic differentiation of polioviruses.

Authors:  H G van der Avoort; B P Hull; T Hovi; M A Pallansch; O M Kew; R Crainic; D J Wood; M N Mulders; A M van Loon
Journal:  J Clin Microbiol       Date:  1995-10       Impact factor: 5.948

8.  Outbreak of poliomyelitis in Hispaniola associated with circulating type 1 vaccine-derived poliovirus.

Authors:  Olen Kew; Victoria Morris-Glasgow; Mauricio Landaverde; Cara Burns; Jing Shaw; Zacarías Garib; Jean André; Elizabeth Blackman; C Jason Freeman; Jaume Jorba; Roland Sutter; Gina Tambini; Linda Venczel; Cristina Pedreira; Fernando Laender; Hiroyuki Shimizu; Tetsuo Yoneyama; Tatsuo Miyamura; Harrie van Der Avoort; M Steven Oberste; David Kilpatrick; Stephen Cochi; Mark Pallansch; Ciro de Quadros
Journal:  Science       Date:  2002-03-14       Impact factor: 47.728

9.  Identification of vaccine-related polioviruses by hybridization with specific RNA probes.

Authors:  L De; B Nottay; C F Yang; B P Holloway; M Pallansch; O Kew
Journal:  J Clin Microbiol       Date:  1995-03       Impact factor: 5.948

10.  Laboratory surveillance for wild and vaccine-derived polioviruses--worldwide, January 2007-June 2008.

Authors: 
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2008-09-05       Impact factor: 17.586
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  83 in total

1.  Human enterovirus infections in children at increased risk for type 1 diabetes: the Babydiet study.

Authors:  M-L Simonen-Tikka; M Pflueger; P Klemola; C Savolainen-Kopra; T Smura; S Hummel; S Kaijalainen; K Nuutila; O Natri; M Roivainen; A-G Ziegler
Journal:  Diabetologia       Date:  2011-09-20       Impact factor: 10.122

2.  Evaluation of a TaqMan Array Card for Detection of Central Nervous System Infections.

Authors:  Clayton O Onyango; Vladimir Loparev; Shirley Lidechi; Vinod Bhullar; D Scott Schmid; Kay Radford; Michael K Lo; Paul Rota; Barbara W Johnson; Jorge Munoz; Martina Oneko; Deron Burton; Carolyn M Black; John Neatherlin; Joel M Montgomery; Barry Fields
Journal:  J Clin Microbiol       Date:  2017-04-12       Impact factor: 5.948

3.  Detection of imported wild polioviruses and of vaccine-derived polioviruses by environmental surveillance in Egypt.

Authors:  Soile Blomqvist; Laila El Bassioni; Eman M El Maamoon Nasr; Anja Paananen; Svetlana Kaijalainen; Humayun Asghar; Esther de Gourville; Merja Roivainen
Journal:  Appl Environ Microbiol       Date:  2012-05-11       Impact factor: 4.792

4.  Limited and localized outbreak of newly emergent type 2 vaccine-derived poliovirus in Sichuan, China.

Authors:  Dongmei Yan; Yong Zhang; Shuangli Zhu; Na Chen; Xiaolei Li; Dongyan Wang; Xiaozhen Ma; Hui Zhu; Wenbin Tong; Wenbo Xu
Journal:  Clin Vaccine Immunol       Date:  2014-05-21

5.  Development of a poliovirus neutralization test with poliovirus pseudovirus for measurement of neutralizing antibody titer in human serum.

Authors:  Minetaro Arita; Masae Iwai; Takaji Wakita; Hiroyuki Shimizu
Journal:  Clin Vaccine Immunol       Date:  2011-08-31

6.  Application of TaqMan low-density arrays for simultaneous detection of multiple respiratory pathogens.

Authors:  Maja Kodani; Genyan Yang; Laura M Conklin; Tatiana C Travis; Cynthia G Whitney; Larry J Anderson; Stephanie J Schrag; Thomas H Taylor; Bernard W Beall; Robert F Breiman; Daniel R Feikin; M Kariuki Njenga; Leonard W Mayer; M Steven Oberste; Maria Lucia C Tondella; Jonas M Winchell; Stephen L Lindstrom; Dean D Erdman; Barry S Fields
Journal:  J Clin Microbiol       Date:  2011-04-06       Impact factor: 5.948

7.  Diagnostic Assay Development for Poliovirus Eradication.

Authors:  Nancy Gerloff; Hong Sun; Mark Mandelbaum; Chelsea Maher; W Allan Nix; Sohail Zaidi; Shahzad Shaukat; Lerato Seakamela; Uma P Nalavade; Deepa K Sharma; M Steven Oberste; Everardo Vega
Journal:  J Clin Microbiol       Date:  2018-01-24       Impact factor: 5.948

8.  Identification of vaccine-derived polioviruses using dual-stage real-time RT-PCR.

Authors:  David R Kilpatrick; Karen Ching; Jane Iber; Qi Chen; Su-Ju Yang; Lina De; A J Williams; Mark Mandelbaum; Hong Sun; M Steven Oberste; Olen M Kew
Journal:  J Virol Methods       Date:  2013-12-07       Impact factor: 2.014

9.  Characterizing the picornavirus landscape among synanthropic nonhuman primates in Bangladesh, 2007 to 2008.

Authors:  M Steven Oberste; Mohammed M Feeroz; Kaija Maher; W Allan Nix; Gregory A Engel; Kamrul M Hasan; Sajeda Begum; Gunwha Oh; Anwarul H Chowdhury; Mark A Pallansch; Lisa Jones-Engel
Journal:  J Virol       Date:  2012-10-24       Impact factor: 5.103

10.  Naturally acquired picornavirus infections in primates at the Dhaka zoo.

Authors:  M Steven Oberste; Mohammed M Feeroz; Kaija Maher; W Allan Nix; Gregory A Engel; Sajeda Begum; Kamrul M Hasan; Gunwha Oh; Mark A Pallansch; Lisa Jones-Engel
Journal:  J Virol       Date:  2012-10-24       Impact factor: 5.103
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