Literature DB >> 24319503

Modeling the evolution of gene regulatory networks for spatial patterning in embryo development.

Alexander V Spirov1, David M Holloway.   

Abstract

A central question in evolutionary biology concerns the transition between discrete numbers of units (e.g. vertebrate digits, arthropod segments). How do particular numbers of units, robust and characteristic for one species, evolve into another number for another species? Intermediate phases with a diversity of forms have long been theorized, but these leave little fossil or genomic data. We use evolutionary computations (EC) of a gene regulatory network (GRN) model to investigate how embryonic development is altered to create new forms. The trajectories are epochal and non-smooth, in accord with both the observed stability of species and the evolvability between forms.

Entities:  

Keywords:  biological evolution; evolution in silico; evolutionry modelling; gene regulatory networks; genetic algorithms

Year:  2013        PMID: 24319503      PMCID: PMC3849711          DOI: 10.1016/j.procs.2013.05.303

Source DB:  PubMed          Journal:  Procedia Comput Sci


  27 in total

1.  Design of genetic networks with specified functions by evolution in silico.

Authors:  Paul François; Vincent Hakim
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-02       Impact factor: 11.205

2.  Evolution: Revenge of the hopeful monster.

Authors:  Tanguy Chouard
Journal:  Nature       Date:  2010-02-18       Impact factor: 49.962

3.  Finding the center reliably: robust patterns of developmental gene expression.

Authors:  Martin Howard; Pieter Rein ten Wolde
Journal:  Phys Rev Lett       Date:  2005-11-09       Impact factor: 9.161

4.  Probing the limits to positional information.

Authors:  Thomas Gregor; David W Tank; Eric F Wieschaus; William Bialek
Journal:  Cell       Date:  2007-07-13       Impact factor: 41.582

5.  The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

6.  Positional information and the spatial pattern of cellular differentiation.

Authors:  L Wolpert
Journal:  J Theor Biol       Date:  1969-10       Impact factor: 2.691

7.  Canalization of segmentation and its evolution in Drosophila.

Authors:  Susan E Lott; Martin Kreitman; Arnar Palsson; Elena Alekseeva; Michael Z Ludwig
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-14       Impact factor: 11.205

8.  Canalization of gene expression in the Drosophila blastoderm by gap gene cross regulation.

Authors:  Svetlana Surkova; Alexander V Spirov; Vitaly V Gursky; Hilde Janssens; Ah-Ram Kim; Ovidiu Radulescu; Carlos E Vanario-Alonso; David H Sharp; Maria Samsonova; John Reinitz
Journal:  PLoS Biol       Date:  2009-03-10       Impact factor: 8.029

9.  Three maternal coordinate systems cooperate in the patterning of the Drosophila head.

Authors:  U Grossniklaus; K M Cadigan; W J Gehring
Journal:  Development       Date:  1994-11       Impact factor: 6.868

10.  Fundamental limits to position determination by concentration gradients.

Authors:  Filipe Tostevin; Pieter Rein ten Wolde; Martin Howard
Journal:  PLoS Comput Biol       Date:  2007-03-19       Impact factor: 4.475

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  1 in total

1.  On the evolution and development of morphological complexity: A view from gene regulatory networks.

Authors:  Pascal F Hagolani; Roland Zimm; Renske Vroomans; Isaac Salazar-Ciudad
Journal:  PLoS Comput Biol       Date:  2021-02-24       Impact factor: 4.475

  1 in total

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