Literature DB >> 24316824

Structure of Acidothermus cellulolyticus family 74 glycoside hydrolase at 1.82 Å resolution.

Markus Alahuhta1, William S Adney, Michael E Himmel, Vladimir V Lunin.   

Abstract

Here, a 1.82 Å resolution X-ray structure of a glycoside hydrolase family 74 (GH74) enzyme from Acidothermus cellulolyticus is reported. The resulting structure was refined to an R factor of 0.150 and an Rfree of 0.196. Structural analysis shows that five related structures have been reported with a secondary-structure similarity of between 75 and 89%. The five similar structures were all either Clostridium thermocellum or Geotrichum sp. M128 GH74 xyloglucanases. Structural analysis indicates that the A. cellulolyticus GH74 enzyme is an endoxyloglucanase, as it lacks a characteristic loop that blocks one end of the active site in exoxyloglucanases. Superimposition with the C. thermocellum GH74 shows that Asp451 and Asp38 are the catalytic residues.

Entities:  

Keywords:  GH74; endoglucanases; glycoside hydrolases; xyloglucanases

Mesh:

Substances:

Year:  2013        PMID: 24316824      PMCID: PMC3855714          DOI: 10.1107/S1744309113030005

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  16 in total

1.  Structure validation by Calpha geometry: phi,psi and Cbeta deviation.

Authors:  Simon C Lovell; Ian W Davis; W Bryan Arendall; Paul I W de Bakker; J Michael Word; Michael G Prisant; Jane S Richardson; David C Richardson
Journal:  Proteins       Date:  2003-02-15

2.  Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions.

Authors:  E Krissinel; K Henrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

Review 3.  Mechanisms of enzymatic glycoside hydrolysis.

Authors:  J D McCarter; S G Withers
Journal:  Curr Opin Struct Biol       Date:  1994-12       Impact factor: 6.809

Review 4.  Functions of xyloglucan in plant cells.

Authors:  Takahisa Hayashi; Rumi Kaida
Journal:  Mol Plant       Date:  2010-10-13       Impact factor: 13.164

5.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

6.  The structural basis for the exo-mode of action in GH74 oligoxyloglucan reducing end-specific cellobiohydrolase.

Authors:  Katsuro Yaoi; Hidemasa Kondo; Ayako Hiyoshi; Natsuko Noro; Hiroshi Sugimoto; Sakae Tsuda; Yasushi Mitsuishi; Kentaro Miyazaki
Journal:  J Mol Biol       Date:  2007-04-19       Impact factor: 5.469

7.  The crystal structure of a xyloglucan-specific endo-beta-1,4-glucanase from Geotrichum sp. M128 xyloglucanase reveals a key amino acid residue for substrate specificity.

Authors:  Katsuro Yaoi; Hidemasa Kondo; Ayako Hiyoshi; Natsuko Noro; Hiroshi Sugimoto; Sakae Tsuda; Kentaro Miyazaki
Journal:  FEBS J       Date:  2009-08-04       Impact factor: 5.542

8.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Authors:  Fabian Sievers; Andreas Wilm; David Dineen; Toby J Gibson; Kevin Karplus; Weizhong Li; Rodrigo Lopez; Hamish McWilliam; Michael Remmert; Johannes Söding; Julie D Thompson; Desmond G Higgins
Journal:  Mol Syst Biol       Date:  2011-10-11       Impact factor: 11.429

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21
View more
  3 in total

1.  Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74.

Authors:  Gregory Arnal; Peter J Stogios; Jathavan Asohan; Mohamed A Attia; Tatiana Skarina; Alexander Holm Viborg; Bernard Henrissat; Alexei Savchenko; Harry Brumer
Journal:  J Biol Chem       Date:  2019-07-19       Impact factor: 5.157

2.  Strategic aromatic residues in the catalytic cleft of the xyloglucanase MtXgh74 modifying thermostability, mode of enzyme action, and viscosity reduction ability.

Authors:  Oksana V Berezina; Sergey V Rykov; Angelina K Polyakova; Marine E Bozdaganyan; Anna V Sidochenko; Melanie Baudrexl; Wolfgang H Schwarz; Vladimir V Zverlov; Sergey V Yarotsky
Journal:  Appl Microbiol Biotechnol       Date:  2021-02-01       Impact factor: 4.813

3.  Molecular Characterization of Xyloglucanase cel74a from Trichoderma reesei.

Authors:  Douglas Christian Borges Lopes; Cláudia Batista Carraro; Roberto Nascimento Silva; Renato Graciano de Paula
Journal:  Int J Mol Sci       Date:  2021-04-27       Impact factor: 5.923

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.