Literature DB >> 33521846

Strategic aromatic residues in the catalytic cleft of the xyloglucanase MtXgh74 modifying thermostability, mode of enzyme action, and viscosity reduction ability.

Oksana V Berezina1,2, Sergey V Rykov3,4, Angelina K Polyakova5, Marine E Bozdaganyan6,7,8, Anna V Sidochenko8, Melanie Baudrexl9, Wolfgang H Schwarz10, Vladimir V Zverlov11,12, Sergey V Yarotsky4.   

Abstract

The thermostable endo-processive xyloglucanase MtXgh74 from Myceliophthora thermophila was used to study the influence of aromatic amino acids in the catalytic cleft on the mode of action and the ability of enzyme to reduce xyloglucan viscosity. The enzyme derivative Mut I with mutations W64A/W67A in the "negative" subsites of the catalytic cleft resulted in a 5.5-fold increase of the Km value. Mut I produced oligosaccharides of various lengths in addition to xyloglucan building blocks. The W320A/W321A substitutions in the "positive" subsites of the mutated enzyme Mut II catalytic cleft increased the Km value 54-fold and resulted in an endo-dissociative mode of action. The ability of Mut II to reduce the viscosity of xyloglucan at 50 °C was much better than that of other MtXgh74 variants. Besides, Mut II efficiently reduced viscosity of a natural substrate, the pulp of xyloglucan-containing tamarind seed flour. The Km, Vmax, and kcat values and viscosity reduction ability of the enzyme derivative Mut III (W320A/W321A/G446Y) returned to levels close to that of MtXgh74. The pattern of xyloglucan hydrolysis by Mut III was typical for endo-processive xyloglucanases. The thermostability of Mut I and Mut II at 60 °C decreased significantly compared to the wild type, whereas the thermostability of Mut III at 60 °C restored almost to the MtXgh74-wt value. All mutants lost the ability to cleave the backbone of xyloglucan building blocks which was a characteristic of MtXgh74. Instead they acquired a low branch removing activity. Molecular dynamics simulations revealed the role of mutated amino acids in the complex action mechanism of GH74 enzymes. KEY POINTS: • Endo-processive mode of action of the xyloglucanase MtXgh74 was altered by rational design. • The endo-dissociative mutant Mut II (W320A/W321A) efficiently reduced XyG viscosity. • The substitutions W320A/W321A/G446Y in Mut III recovered the endo-processive mode. • Mut II can be used to reduce the viscosity of biomass slurries containing tamarind seed flour.

Entities:  

Keywords:  GH74 family; Glycoside hydrolase; Mode of action; Thermostability; Viscosity reduction; Xyloglucan; Xyloglucanase

Mesh:

Substances:

Year:  2021        PMID: 33521846     DOI: 10.1007/s00253-021-11106-3

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  30 in total

1.  Canonical sampling through velocity rescaling.

Authors:  Giovanni Bussi; Davide Donadio; Michele Parrinello
Journal:  J Chem Phys       Date:  2007-01-07       Impact factor: 3.488

2.  An investigation of the substrate specificity of the xyloglucanase Cel74A from Hypocrea jecorina.

Authors:  Tom Desmet; Tineke Cantaert; Peter Gualfetti; Wim Nerinckx; Laurie Gross; Colin Mitchinson; Kathleen Piens
Journal:  FEBS J       Date:  2007-01       Impact factor: 5.542

3.  Thermostable multifunctional GH74 xyloglucanase from Myceliophthora thermophila: high-level expression in Pichia pastoris and characterization of the recombinant protein.

Authors:  Oksana V Berezina; Jonathan Herlet; Sergey V Rykov; Petra Kornberger; Artem Zavyalov; Dmitriy Kozlov; Liliya Sakhibgaraeva; Irina Krestyanova; Wolfgang H Schwarz; Vladimir V Zverlov; Wolfgang Liebl; Sergey V Yarotsky
Journal:  Appl Microbiol Biotechnol       Date:  2017-05-05       Impact factor: 4.813

4.  Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74.

Authors:  Gregory Arnal; Peter J Stogios; Jathavan Asohan; Mohamed A Attia; Tatiana Skarina; Alexander Holm Viborg; Bernard Henrissat; Alexei Savchenko; Harry Brumer
Journal:  J Biol Chem       Date:  2019-07-19       Impact factor: 5.157

5.  Structural enzymology reveals the molecular basis of substrate regiospecificity and processivity of an exemplar bacterial glycoside hydrolase family 74 endo-xyloglucanase.

Authors:  Gregory Arnal; Peter J Stogios; Jathavan Asohan; Tatiana Skarina; Alexei Savchenko; Harry Brumer
Journal:  Biochem J       Date:  2018-12-19       Impact factor: 3.857

6.  Structure of Acidothermus cellulolyticus family 74 glycoside hydrolase at 1.82 Å resolution.

Authors:  Markus Alahuhta; William S Adney; Michael E Himmel; Vladimir V Lunin
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-11-28

7.  Toward the estimation of the absolute quality of individual protein structure models.

Authors:  Pascal Benkert; Marco Biasini; Torsten Schwede
Journal:  Bioinformatics       Date:  2010-12-05       Impact factor: 6.937

8.  SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information.

Authors:  Marco Biasini; Stefan Bienert; Andrew Waterhouse; Konstantin Arnold; Gabriel Studer; Tobias Schmidt; Florian Kiefer; Tiziano Gallo Cassarino; Martino Bertoni; Lorenza Bordoli; Torsten Schwede
Journal:  Nucleic Acids Res       Date:  2014-04-29       Impact factor: 16.971

9.  The SWISS-MODEL Repository-new features and functionality.

Authors:  Stefan Bienert; Andrew Waterhouse; Tjaart A P de Beer; Gerardo Tauriello; Gabriel Studer; Lorenza Bordoli; Torsten Schwede
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

10.  π-π stacking interactions: Non-negligible forces for stabilizing porous supramolecular frameworks.

Authors:  Ji-Hua Deng; Jie Luo; Yue-Lei Mao; Shan Lai; Yun-Nan Gong; Di-Chang Zhong; Tong-Bu Lu
Journal:  Sci Adv       Date:  2020-01-10       Impact factor: 14.136

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