Literature DB >> 17498741

The structural basis for the exo-mode of action in GH74 oligoxyloglucan reducing end-specific cellobiohydrolase.

Katsuro Yaoi1, Hidemasa Kondo, Ayako Hiyoshi, Natsuko Noro, Hiroshi Sugimoto, Sakae Tsuda, Yasushi Mitsuishi, Kentaro Miyazaki.   

Abstract

Oligoxyloglucan reducing end-specific cellobiohydrolase (OXG-RCBH) is a unique exo-beta-1,4-glucanase that belongs to glycoside hydrolase family 74. The enzyme recognizes the reducing end of xyloglucan oligosaccharides and releases two glucosyl residue segments from the reducing end of the main chain. Previously, we reported that OXG-RCBH consists of two seven-bladed beta-propeller domains. There is a large cleft between the two domains, and a unique loop encloses one side of the active site cleft. Here, we report the X-ray crystal structure of the OXG-RCBH-substrate complex determined to a resolution of 2.4 A. The substrate bound to the cleft, and its reducing end was arranged near the loop region that is believed to impart OXG-RCBH with its activity. We constructed a deletion mutant of the loop region and conducted a detailed analysis. A deletion mutant of the loop region showed endo-activity with altered substrate recognition. More specifically, cleavage occurred randomly instead of at specific sites, most likely due to the misalignment of the substrate within the subsite. We believe that the loop imparts unique substrate specificity with exo-mode hydrolysis in OXG-RCBH.

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Year:  2007        PMID: 17498741     DOI: 10.1016/j.jmb.2007.04.035

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  17 in total

1.  Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases.

Authors:  Akihito Ochiai; Takafumi Itoh; Bunzo Mikami; Wataru Hashimoto; Kousaku Murata
Journal:  J Biol Chem       Date:  2009-02-04       Impact factor: 5.157

2.  GH52 xylosidase from Geobacillus stearothermophilus: characterization and introduction of xylanase activity by site‑directed mutagenesis of Tyr509.

Authors:  Zongqing Huang; Xiaoshuang Liu; Shaowei Zhang; Ziduo Liu
Journal:  J Ind Microbiol Biotechnol       Date:  2014-01       Impact factor: 3.346

Review 3.  Genomics review of holocellulose deconstruction by aspergilli.

Authors:  Fernando Segato; André R L Damásio; Rosymar C de Lucas; Fabio M Squina; Rolf A Prade
Journal:  Microbiol Mol Biol Rev       Date:  2014-12       Impact factor: 11.056

4.  Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74.

Authors:  Gregory Arnal; Peter J Stogios; Jathavan Asohan; Mohamed A Attia; Tatiana Skarina; Alexander Holm Viborg; Bernard Henrissat; Alexei Savchenko; Harry Brumer
Journal:  J Biol Chem       Date:  2019-07-19       Impact factor: 5.157

5.  Genomic diversification of giant enteric symbionts reflects host dietary lifestyles.

Authors:  David Kamanda Ngugi; Sou Miyake; Matt Cahill; Manikandan Vinu; Timothy J Hackmann; Jochen Blom; Matthew D Tietbohl; Michael L Berumen; Ulrich Stingl
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-23       Impact factor: 11.205

6.  High-temperature enzymatic breakdown of cellulose.

Authors:  Hongliang Wang; Fabio Squina; Fernando Segato; Andrew Mort; David Lee; Kirk Pappan; Rolf Prade
Journal:  Appl Environ Microbiol       Date:  2011-06-17       Impact factor: 4.792

7.  Structure and function of an arabinoxylan-specific xylanase.

Authors:  Márcia A S Correia; Koushik Mazumder; Joana L A Brás; Susan J Firbank; Yanping Zhu; Richard J Lewis; William S York; Carlos M G A Fontes; Harry J Gilbert
Journal:  J Biol Chem       Date:  2011-03-04       Impact factor: 5.157

8.  Structural and functional characterization of a bifunctional GH30-7 xylanase B from the filamentous fungus Talaromyces cellulolyticus.

Authors:  Yusuke Nakamichi; Thierry Fouquet; Shotaro Ito; Masahiro Watanabe; Akinori Matsushika; Hiroyuki Inoue
Journal:  J Biol Chem       Date:  2019-01-17       Impact factor: 5.157

9.  Structure of Acidothermus cellulolyticus family 74 glycoside hydrolase at 1.82 Å resolution.

Authors:  Markus Alahuhta; William S Adney; Michael E Himmel; Vladimir V Lunin
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-11-28

Review 10.  Enzymatic degradation of xyloglucans by Aspergillus species: a comparative view of this genus.

Authors:  Tomohiko Matsuzawa; Akira Watanabe; Takahiro Shintani; Katsuya Gomi; Katsuro Yaoi
Journal:  Appl Microbiol Biotechnol       Date:  2021-03-24       Impact factor: 4.813

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