Literature DB >> 24305051

A mitochondrial genome sequence of a hominin from Sima de los Huesos.

Matthias Meyer1, Qiaomei Fu2, Ayinuer Aximu-Petri1, Isabelle Glocke1, Birgit Nickel1, Juan-Luis Arsuaga3, Ignacio Martínez4, Ana Gracia4, José María Bermúdez de Castro5, Eudald Carbonell6, Svante Pääbo1.   

Abstract

Excavations of a complex of caves in the Sierra de Atapuerca in northern Spain have unearthed hominin fossils that range in age from the early Pleistocene to the Holocene. One of these sites, the 'Sima de los Huesos' ('pit of bones'), has yielded the world's largest assemblage of Middle Pleistocene hominin fossils, consisting of at least 28 individuals dated to over 300,000 years ago. The skeletal remains share a number of morphological features with fossils classified as Homo heidelbergensis and also display distinct Neanderthal-derived traits. Here we determine an almost complete mitochondrial genome sequence of a hominin from Sima de los Huesos and show that it is closely related to the lineage leading to mitochondrial genomes of Denisovans, an eastern Eurasian sister group to Neanderthals. Our results pave the way for DNA research on hominins from the Middle Pleistocene.

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Year:  2013        PMID: 24305051     DOI: 10.1038/nature12788

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  49 in total

1.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

2.  Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.

Authors:  Ludovic Orlando; Aurélien Ginolhac; Guojie Zhang; Duane Froese; Anders Albrechtsen; Mathias Stiller; Mikkel Schubert; Enrico Cappellini; Bent Petersen; Ida Moltke; Philip L F Johnson; Matteo Fumagalli; Julia T Vilstrup; Maanasa Raghavan; Thorfinn Korneliussen; Anna-Sapfo Malaspinas; Josef Vogt; Damian Szklarczyk; Christian D Kelstrup; Jakob Vinther; Andrei Dolocan; Jesper Stenderup; Amhed M V Velazquez; James Cahill; Morten Rasmussen; Xiaoli Wang; Jiumeng Min; Grant D Zazula; Andaine Seguin-Orlando; Cecilie Mortensen; Kim Magnussen; John F Thompson; Jacobo Weinstock; Kristian Gregersen; Knut H Røed; Véra Eisenmann; Carl J Rubin; Donald C Miller; Douglas F Antczak; Mads F Bertelsen; Søren Brunak; Khaled A S Al-Rasheid; Oliver Ryder; Leif Andersson; John Mundy; Anders Krogh; M Thomas P Gilbert; Kurt Kjær; Thomas Sicheritz-Ponten; Lars Juhl Jensen; Jesper V Olsen; Michael Hofreiter; Rasmus Nielsen; Beth Shapiro; Jun Wang; Eske Willerslev
Journal:  Nature       Date:  2013-06-26       Impact factor: 49.962

3.  The first hominin of Europe.

Authors:  Eudald Carbonell; José M Bermúdez de Castro; Josep M Parés; Alfredo Pérez-González; Gloria Cuenca-Bescós; Andreu Ollé; Marina Mosquera; Rosa Huguet; Jan van der Made; Antonio Rosas; Robert Sala; Josep Vallverdú; Nuria García; Darryl E Granger; María Martinón-Torres; Xosé P Rodríguez; Greg M Stock; Josep M Vergès; Ethel Allué; Francesc Burjachs; Isabel Cáceres; Antoni Canals; Alfonso Benito; Carlos Díez; Marina Lozano; Ana Mateos; Marta Navazo; Jesús Rodríguez; Jordi Rosell; Juan L Arsuaga
Journal:  Nature       Date:  2008-03-27       Impact factor: 49.962

4.  Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA.

Authors:  Marie-Theres Gansauge; Matthias Meyer
Journal:  Nat Protoc       Date:  2013-03-14       Impact factor: 13.491

5.  Morphological description and comparison of the dental remains from Atapuerca-Sima de los Huesos site (Spain).

Authors:  María Martinón-Torres; José María Bermúdez de Castro; Aida Gómez-Robles; Leyre Prado-Simón; Juan Luis Arsuaga
Journal:  J Hum Evol       Date:  2011-11-25       Impact factor: 3.895

6.  Typing single polymorphic nucleotides in mitochondrial DNA as a way to access Middle Pleistocene DNA.

Authors:  Cristina Valdiosera; Nuria García; Love Dalén; Colin Smith; Ralf-Dietrich Kahlke; Kerstin Lidén; Anders Angerbjörn; Juan Luis Arsuaga; Anders Götherström
Journal:  Biol Lett       Date:  2006-12-22       Impact factor: 3.703

7.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

8.  Distinct patterns of mitochondrial genome diversity in bonobos (Pan paniscus) and humans.

Authors:  Gábor Zsurka; Tatiana Kudina; Viktoriya Peeva; Kerstin Hallmann; Christian E Elger; Konstantin Khrapko; Wolfram S Kunz
Journal:  BMC Evol Biol       Date:  2010-09-02       Impact factor: 3.260

9.  Multiplexed DNA sequence capture of mitochondrial genomes using PCR products.

Authors:  Tomislav Maricic; Mark Whitten; Svante Pääbo
Journal:  PLoS One       Date:  2010-11-16       Impact factor: 3.240

10.  Is Homo heidelbergensis a distinct species? New insight on the Mauer mandible.

Authors:  Aurélien Mounier; François Marchal; Silvana Condemi
Journal:  J Hum Evol       Date:  2009-02-27       Impact factor: 3.895

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  118 in total

1.  Deciphering the Denisovans.

Authors:  Chris B Stringer; Ian Barnes
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-14       Impact factor: 11.205

2.  Brain enlargement and dental reduction were not linked in hominin evolution.

Authors:  Aida Gómez-Robles; Jeroen B Smaers; Ralph L Holloway; P David Polly; Bernard A Wood
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-03       Impact factor: 11.205

3.  The Skull of Epidolops ameghinoi from the Early Eocene Itaboraí Fauna, Southeastern Brazil, and the Affinities of the Extinct Marsupialiform Order Polydolopimorphia.

Authors:  Robin M D Beck
Journal:  J Mamm Evol       Date:  2016-10-26       Impact factor: 2.611

4.  Screening ancient tuberculosis with qPCR: challenges and opportunities.

Authors:  Kelly M Harkins; Jane E Buikstra; Tessa Campbell; Kirsten I Bos; Eric D Johnson; Johannes Krause; Anne C Stone
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

5.  Introduction. Ancient DNA: the first three decades.

Authors:  Erika Hagelberg; Michael Hofreiter; Christine Keyser
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

6.  Partial uracil-DNA-glycosylase treatment for screening of ancient DNA.

Authors:  Nadin Rohland; Eadaoin Harney; Swapan Mallick; Susanne Nordenfelt; David Reich
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

Review 7.  Reconstructing ancient genomes and epigenomes.

Authors:  Ludovic Orlando; M Thomas P Gilbert; Eske Willerslev
Journal:  Nat Rev Genet       Date:  2015-06-09       Impact factor: 53.242

Review 8.  Numtogenesis as a mechanism for development of cancer.

Authors:  Keshav K Singh; Aaheli Roy Choudhury; Hemant K Tiwari
Journal:  Semin Cancer Biol       Date:  2017-05-13       Impact factor: 15.707

9.  Protein sequences bound to mineral surfaces persist into deep time.

Authors:  Beatrice Demarchi; Shaun Hall; Teresa Roncal-Herrero; Colin L Freeman; Jos Woolley; Molly K Crisp; Julie Wilson; Anna Fotakis; Roman Fischer; Benedikt M Kessler; Rosa Rakownikow Jersie-Christensen; Jesper V Olsen; James Haile; Jessica Thomas; Curtis W Marean; John Parkington; Samantha Presslee; Julia Lee-Thorp; Peter Ditchfield; Jacqueline F Hamilton; Martyn W Ward; Chunting Michelle Wang; Marvin D Shaw; Terry Harrison; Manuel Domínguez-Rodrigo; Ross DE MacPhee; Amandus Kwekason; Michaela Ecker; Liora Kolska Horwitz; Michael Chazan; Roland Kröger; Jane Thomas-Oates; John H Harding; Enrico Cappellini; Kirsty Penkman; Matthew J Collins
Journal:  Elife       Date:  2016-09-27       Impact factor: 8.140

Review 10.  Almost 20 years of Neanderthal palaeogenetics: adaptation, admixture, diversity, demography and extinction.

Authors:  Federico Sánchez-Quinto; Carles Lalueza-Fox
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

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