Literature DB >> 24302732

Structural basis of biological NO generation by octaheme oxidoreductases.

Wouter J Maalcke1, Andreas Dietl, Sophie J Marritt, Julea N Butt, Mike S M Jetten, Jan T Keltjens, Thomas R M Barends, Boran Kartal.   

Abstract

Nitric oxide is an important molecule in all domains of life with significant biological functions in both pro- and eukaryotes. Anaerobic ammonium-oxidizing (anammox) bacteria that contribute substantially to the release of fixed nitrogen into the atmosphere use the oxidizing power of NO to activate inert ammonium into hydrazine (N2H4). Here, we describe an enzyme from the anammox bacterium Kuenenia stuttgartiensis that uses a novel pathway to make NO from hydroxylamine. This new enzyme is related to octaheme hydroxylamine oxidoreductase, a key protein in aerobic ammonium-oxidizing bacteria. By a multiphasic approach including the determination of the crystal structure of the K. stuttgartiensis enzyme at 1.8 Å resolution and refinement and reassessment of the hydroxylamine oxidoreductase structure from Nitrosomonas europaea, both in the presence and absence of their substrates, we propose a model for NO formation by the K. stuttgartiensis enzyme. Our results expand the understanding of the functions that the widespread family of octaheme proteins have.

Entities:  

Keywords:  Anaerobic Ammonium Oxidation; Enzyme Kinetics; Enzyme Purification; Hydroxylamine; Nitric Oxide; Nitrogen Metabolism; Octaheme Proteins; Protein Structure; Reactive Nitrogen Species; X-ray Crystallography

Mesh:

Substances:

Year:  2013        PMID: 24302732      PMCID: PMC3894310          DOI: 10.1074/jbc.M113.525147

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  59 in total

1.  Effect of nitric oxide on anammox bacteria.

Authors:  Boran Kartal; Nico C G Tan; Erwin Van de Biezen; Marlies J Kampschreur; Mark C M Van Loosdrecht; Mike S M Jetten
Journal:  Appl Environ Microbiol       Date:  2010-07-30       Impact factor: 4.792

2.  Likelihood-enhanced fast translation functions.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Laurent C Storoni; Randy J Read
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-03-24

3.  Macromolecular crystal annealing: overcoming increased mosaicity associated with cryocrystallography.

Authors:  J M Harp; D E Timm; G J Bunick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-07-01

4.  The 2.8 A structure of hydroxylamine oxidoreductase from a nitrifying chemoautotrophic bacterium, Nitrosomonas europaea.

Authors:  N Igarashi; H Moriyama; T Fujiwara; Y Fukumori; N Tanaka
Journal:  Nat Struct Biol       Date:  1997-04

5.  Studies on cytochrome c peroxidase. II. Stoichiometry between enzyme, H2O2, and ferrocytochrome c and enzymic determination of extinction coefficients of cytochrome c.

Authors:  T Yonetani
Journal:  J Biol Chem       Date:  1965-11       Impact factor: 5.157

6.  Hydroxylamine oxidoreductase: a 20-heme, 200 000 molecular weight cytochrome c with unusual denaturation properties which forms a 63 000 molecular weight monomer after heme removal.

Authors:  K R Terry; A B Hooper
Journal:  Biochemistry       Date:  1981-11-24       Impact factor: 3.162

7.  Mechanism of the six-electron reduction of nitrite to ammonia by cytochrome c nitrite reductase.

Authors:  Oliver Einsle; Albrecht Messerschmidt; Robert Huber; Peter M H Kroneck; Frank Neese
Journal:  J Am Chem Soc       Date:  2002-10-02       Impact factor: 15.419

Review 8.  Practical methods for detection of nitric oxide.

Authors:  T Nagano
Journal:  Luminescence       Date:  1999 Nov-Dec       Impact factor: 2.464

9.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

10.  Proton-coupled electron transfer of flavodoxin immobilized on nanostructured tin dioxide electrodes: thermodynamics versus kinetics control of protein redox function.

Authors:  Yeni Astuti; Emmanuel Topoglidis; Paul B Briscoe; Andrea Fantuzzi; Gianfranco Gilardi; James R Durrant
Journal:  J Am Chem Soc       Date:  2004-06-30       Impact factor: 15.419

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  27 in total

1.  Nitric oxide is an obligate bacterial nitrification intermediate produced by hydroxylamine oxidoreductase.

Authors:  Jonathan D Caranto; Kyle M Lancaster
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-17       Impact factor: 11.205

2.  Immunogold Localization of Key Metabolic Enzymes in the Anammoxosome and on the Tubule-Like Structures of Kuenenia stuttgartiensis.

Authors:  Naomi M de Almeida; Sarah Neumann; Rob J Mesman; Christina Ferousi; Jan T Keltjens; Mike S M Jetten; Boran Kartal; Laura van Niftrik
Journal:  J Bacteriol       Date:  2015-05-11       Impact factor: 3.490

3.  The inner workings of the hydrazine synthase multiprotein complex.

Authors:  Andreas Dietl; Christina Ferousi; Wouter J Maalcke; Andreas Menzel; Simon de Vries; Jan T Keltjens; Mike S M Jetten; Boran Kartal; Thomas R M Barends
Journal:  Nature       Date:  2015-10-19       Impact factor: 49.962

4.  Is there a pathway for N2O production from hydroxylamine oxidoreductase in ammonia-oxidizing bacteria?

Authors:  Corey J White; Nicolai Lehnert
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-13       Impact factor: 11.205

Review 5.  Biological and Bioinspired Inorganic N-N Bond-Forming Reactions.

Authors:  Christina Ferousi; Sean H Majer; Ida M DiMucci; Kyle M Lancaster
Journal:  Chem Rev       Date:  2020-02-28       Impact factor: 60.622

6.  Nitrosomonas europaea cytochrome P460 is a direct link between nitrification and nitrous oxide emission.

Authors:  Jonathan D Caranto; Avery C Vilbert; Kyle M Lancaster
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-16       Impact factor: 11.205

7.  Discovery of a functional, contracted heme-binding motif within a multiheme cytochrome.

Authors:  Christina Ferousi; Simon Lindhoud; Frauke Baymann; Eric R Hester; Joachim Reimann; Boran Kartal
Journal:  J Biol Chem       Date:  2019-10-03       Impact factor: 5.157

Review 8.  The microbial nitrogen-cycling network.

Authors:  Marcel M M Kuypers; Hannah K Marchant; Boran Kartal
Journal:  Nat Rev Microbiol       Date:  2018-02-05       Impact factor: 60.633

9.  A nitric oxide-binding heterodimeric cytochrome c complex from the anammox bacterium Kuenenia stuttgartiensis binds to hydrazine synthase.

Authors:  Mohd Akram; Joachim Reimann; Andreas Dietl; Andreas Menzel; Wouter Versantvoort; Boran Kartal; Mike S M Jetten; Thomas R M Barends
Journal:  J Biol Chem       Date:  2019-09-22       Impact factor: 5.157

10.  Multiheme hydroxylamine oxidoreductases produce NO during ammonia oxidation in methanotrophs.

Authors:  Wouter Versantvoort; Arjan Pol; Mike S M Jetten; Laura van Niftrik; Joachim Reimann; Boran Kartal; Huub J M Op den Camp
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-10       Impact factor: 11.205

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