Literature DB >> 2430256

An automated technique for analysis of current transitions in multilevel single-channel recordings.

M B Vivaudou, J J Singer, J V Walsh.   

Abstract

Detailed kinetic studies of ion channel gating are best carried out using the patch-clamp technique which permits the measurement of the ionic current through individual channels. Typical patch-clamp recordings show the current signal, in the form of a sequence of rectangular pulses (analogous to a random telegraph signal), riding on slow baseline drift, partially obscured by high-frequency noise and distorted by filtering. In order to analyze such recordings, we have developed a set of interactive Pascal programs based on a feature-detection algorithm capable of identifying current transitions in multiple-channel recordings in the presence of substantial levels of noise and drift. Software operation is largely automated but includes provisions for examination and correction of the output. The software was optimized and systematically evaluated using simulated data with variable amounts of noise and drift. Results indicate that satisfactory performance is obtained for signal-to-noise ratio as low as four even with uncommonly large baseline drift. Steady-state processing speeds varied from 1,000 to 4,000 samples per second depending on data complexity.

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Year:  1986        PMID: 2430256     DOI: 10.1007/bf00652618

Source DB:  PubMed          Journal:  Pflugers Arch        ISSN: 0031-6768            Impact factor:   3.657


  10 in total

1.  Large conductance ca-activated k channels in smooth muscle cell membrane: reduction in unitary currents due to internal na ions.

Authors:  J J Singer; J V Walsh
Journal:  Biophys J       Date:  1984-01       Impact factor: 4.033

2.  A general solution to the time interval omission problem applied to single channel analysis.

Authors:  B Roux; R Sauvé
Journal:  Biophys J       Date:  1985-07       Impact factor: 4.033

Review 3.  Large-conductance Ca2+-activated K+ channels in freshly dissociated smooth muscle cells.

Authors:  J J Singer; J V Walsh
Journal:  Membr Biochem       Date:  1986

4.  Stochastic behavior of a many-channel membrane system.

Authors:  M B Jackson
Journal:  Biophys J       Date:  1985-02       Impact factor: 4.033

5.  AZTEC, a preprocessing program for real-time ECG rhythm analysis.

Authors:  J R Cox; F M Nolle; H A Fozzard; G C Oliver
Journal:  IEEE Trans Biomed Eng       Date:  1968-04       Impact factor: 4.538

6.  Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches.

Authors:  O P Hamill; A Marty; E Neher; B Sakmann; F J Sigworth
Journal:  Pflugers Arch       Date:  1981-08       Impact factor: 3.657

7.  The automated analysis of data from single ionic channels.

Authors:  F Sachs; J Neil; N Barkakati
Journal:  Pflugers Arch       Date:  1982-12       Impact factor: 3.657

Review 8.  Ca++-activated K+ channels in vertebrate smooth muscle cells.

Authors:  J V Walsh; J J Singer
Journal:  Cell Calcium       Date:  1983-12       Impact factor: 6.817

9.  An inexpensive microcomputer system for analysis of single channel currents.

Authors:  G A Cottrell; D A Duff; J J Lambert
Journal:  J Neurosci Methods       Date:  1983-11       Impact factor: 2.390

10.  Software for electrophysiological experiments with a personal computer.

Authors:  D R Kegel; B D Wolf; R E Sheridan; H A Lester
Journal:  J Neurosci Methods       Date:  1985-02       Impact factor: 2.390

  10 in total
  15 in total

1.  Multiple conductances in the large K+ channel from Chara corallina shown by a transient analysis method.

Authors:  S D Tyerman; B R Terry; G P Findlay
Journal:  Biophys J       Date:  1992-03       Impact factor: 4.033

2.  Hyperpolarization-activated cationic channels in smooth muscle cells are stretch sensitive.

Authors:  T Hisada; R W Ordway; M T Kirber; J J Singer; J V Walsh
Journal:  Pflugers Arch       Date:  1991-01       Impact factor: 3.657

3.  Characterization of calcium-activated potassium channels in single smooth muscle cells using the patch-clamp technique.

Authors:  J J Singer; J V Walsh
Journal:  Pflugers Arch       Date:  1987-02       Impact factor: 3.657

4.  Enzyme kinetics of the prime K+ channel in the tonoplast of Chara: selectivity and inhibition.

Authors:  H G Klieber; D Gradmann
Journal:  J Membr Biol       Date:  1993-03       Impact factor: 1.843

5.  Stretch-inactivated cationic channels in single smooth muscle cells.

Authors:  T Hisada; J V Walsh; J J Singer
Journal:  Pflugers Arch       Date:  1993-01       Impact factor: 3.657

6.  Aluminofluoride activates hyperpolarization- and stretch-activated cationic channels in single smooth muscle cells.

Authors:  T Hisada; J J Singer; J V Walsh
Journal:  Pflugers Arch       Date:  1993-01       Impact factor: 3.657

7.  Stretch-activated ion channels in smooth muscle: a mechanism for the initiation of stretch-induced contraction.

Authors:  M T Kirber; J V Walsh; J J Singer
Journal:  Pflugers Arch       Date:  1988-09       Impact factor: 3.657

8.  Single calcium-activated potassium channel in cultured mammary epithelial cells.

Authors:  K Furuya; K Enomoto; S Furuya; S Yamagishi; C Edwards; T Oka
Journal:  Pflugers Arch       Date:  1989-06       Impact factor: 3.657

9.  Characteristics of two types of chloride channel in sarcoplasmic reticulum vesicles from rabbit skeletal muscle.

Authors:  J I Kourie; D R Laver; P R Junankar; P W Gage; A F Dulhunty
Journal:  Biophys J       Date:  1996-01       Impact factor: 4.033

10.  Secretin-regulated chloride channel on the apical plasma membrane of pancreatic duct cells.

Authors:  M A Gray; J R Greenwell; B E Argent
Journal:  J Membr Biol       Date:  1988-10       Impact factor: 1.843

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