Literature DB >> 6296760

The automated analysis of data from single ionic channels.

F Sachs, J Neil, N Barkakati.   

Abstract

The development of single channel recording has brought with it the need to analyse enormous amounts of data. The data analysis is time consuming and subject to observer biases since the events are random in time and are contaminated with uncorrelated noise. We have developed a heuristic pattern recognition program which identifies with high precision single channel currents and rejects contaminating noise. The program interactively provides for a variety of amplitude and duration measures. Analysis is flexible and rapid: a file containing over 10,000 events can be analysed in under 2 h. Specific detection features include variable lowpass filtering, automatic baseline restoration, and adaptive amplitude thresholds. A record is analysed through duration histograms, binomial estimates of the number of active channels present, cross-correlation estimates between parameters, spectral analysis of events and background noise, and stationarity of mean channel current. The graphic output facilities can plot raw data (after filtering and baseline restoration) with the idealized signal superimposed or with detected events underlined. A batch processing facility has been included to allow processing of data during periods of low computer demand.

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Year:  1982        PMID: 6296760     DOI: 10.1007/bf00580798

Source DB:  PubMed          Journal:  Pflugers Arch        ISSN: 0031-6768            Impact factor:   3.657


  11 in total

1.  Single-channel currents recorded from membrane of denervated frog muscle fibres.

Authors:  E Neher; B Sakmann
Journal:  Nature       Date:  1976-04-29       Impact factor: 49.962

2.  A differential operator technique for restoring degraded signals and images.

Authors:  J S Ostrem; D G Falconer
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  1981-03       Impact factor: 6.226

3.  Relaxation and fluctuations of membrane currents that flow through drug-operated channels.

Authors:  D Colquhoun; A G Hawkes
Journal:  Proc R Soc Lond B Biol Sci       Date:  1977-11-14

4.  Local anaesthetics transiently block currents through single acetylcholine-receptor channels.

Authors:  E Neher; J H Steinbach
Journal:  J Physiol       Date:  1978-04       Impact factor: 5.182

5.  Development of acetylcholine receptor clusters on cultured muscle cells.

Authors:  A J Sytkowski; Z Vogel; M W Nirenberg
Journal:  Proc Natl Acad Sci U S A       Date:  1973-01       Impact factor: 11.205

6.  On the stochastic properties of single ion channels.

Authors:  D Colquhoun; A G Hawkes
Journal:  Proc R Soc Lond B Biol Sci       Date:  1981-03-06

7.  A possible modulation of acetylcholine receptors of embryonic chick muscle cells by alpha-bungarotoxin.

Authors:  H F Elson
Journal:  J Supramol Struct       Date:  1979

8.  Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches.

Authors:  O P Hamill; A Marty; E Neher; B Sakmann; F J Sigworth
Journal:  Pflugers Arch       Date:  1981-08       Impact factor: 3.657

9.  Fluctuating responses at a central synapse: n of binomial fit predicts number of stained presynaptic boutons.

Authors:  H Korn; A Triller; A Mallet; D S Faber
Journal:  Science       Date:  1981-08-21       Impact factor: 47.728

10.  Effect of N-bromoacetamide on single sodium channel currents in excised membrane patches.

Authors:  J Patlak; R Horn
Journal:  J Gen Physiol       Date:  1982-03       Impact factor: 4.086

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  69 in total

1.  Dominant gating governing transient GABA(A) receptor activity: a first latency and Po/o analysis.

Authors:  P M Burkat; J Yang; K J Gingrich
Journal:  J Neurosci       Date:  2001-09-15       Impact factor: 6.167

2.  Multichannel recordings from membranes which contain gap junctions.

Authors:  K Manivannan; S V Ramanan; R T Mathias; P R Brink
Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

3.  Restoration of single-channel currents using the segmental k-means method based on hidden Markov modeling.

Authors:  Feng Qin
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

4.  Multiple conductances in the large K+ channel from Chara corallina shown by a transient analysis method.

Authors:  S D Tyerman; B R Terry; G P Findlay
Journal:  Biophys J       Date:  1992-03       Impact factor: 4.033

5.  Beta-adrenergic stimulation of calcium channels occurs by potentiation of high-activity gating modes.

Authors:  D T Yue; S Herzig; E Marban
Journal:  Proc Natl Acad Sci U S A       Date:  1990-01       Impact factor: 11.205

6.  A large, multiple-conductance chloride channel in normal human T lymphocytes.

Authors:  L C Schlichter; R Grygorczyk; P A Pahapill; C Grygorczyk
Journal:  Pflugers Arch       Date:  1990-06       Impact factor: 3.657

7.  Different sites control voltage dependence and conductance of sarcoball anion channel.

Authors:  G D Hals; P T Palade
Journal:  Biophys J       Date:  1990-05       Impact factor: 4.033

8.  Inhibition of a cardiac sarcoplasmic reticulum chloride channel by tamoxifen.

Authors:  Sanja Beca; Evgeny Pavlov; Margaret E Kargacin; Roozbeh Aschar-Sobbi; Robert J French; Gary J Kargacin
Journal:  Pflugers Arch       Date:  2008-05-06       Impact factor: 3.657

9.  A cyclic AMP-activated K+ channel in Drosophila larval muscle is persistently activated in dunce.

Authors:  R Delgado; P Hidalgo; F Diaz; R Latorre; P Labarca
Journal:  Proc Natl Acad Sci U S A       Date:  1991-01-15       Impact factor: 11.205

10.  Micromolar concentrations of veratridine activate sodium channels in embryonic cockroach neurones in culture.

Authors:  M Amar; Y Pichon; I Inoue
Journal:  Pflugers Arch       Date:  1991-01       Impact factor: 3.657

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