Literature DB >> 24274586

Synthetic microbial ecosystems: an exciting tool to understand and apply microbial communities.

Karen De Roy1, Massimo Marzorati, Pieter Van den Abbeele, Tom Van de Wiele, Nico Boon.   

Abstract

Many microbial ecologists have described the composition of microbial communities in a plenitude of environments, which has greatly improved our basic understanding of microorganisms and ecosystems. However, the factors and processes that influence the behaviour and functionality of an ecosystem largely remain black boxes when using conventional approaches. Therefore, synthetic microbial ecology has gained a lot of interest in the last few years. Because of their reduced complexity and increased controllability, synthetic communities are often preferred over complex communities to examine ecological theories. They limit the factors that influence the microbial community to a minimum, allowing their management and identifying specific community responses. However, besides their use for basic research, synthetic ecosystems also found their way towards different applications, like industrial fermentation and bioremediation. Here, we review why and how synthetic microbial communities are applied for research purposes and for which applications they have been and could be successfully used.
© 2013 Society for Applied Microbiology and John Wiley & Sons Ltd.

Mesh:

Year:  2013        PMID: 24274586     DOI: 10.1111/1462-2920.12343

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  58 in total

1.  The extent of functional redundancy changes as species' roles shift in different environments.

Authors:  Ingo Fetzer; Karin Johst; Robert Schäwe; Thomas Banitz; Hauke Harms; Antonis Chatzinotas
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-17       Impact factor: 11.205

Review 2.  Unraveling interactions in microbial communities - from co-cultures to microbiomes.

Authors:  Justin Tan; Cristal Zuniga; Karsten Zengler
Journal:  J Microbiol       Date:  2015-05-03       Impact factor: 3.422

3.  Synthetic microbial consortia for biosynthesis and biodegradation: promises and challenges.

Authors:  Shun Che; Yujie Men
Journal:  J Ind Microbiol Biotechnol       Date:  2019-07-05       Impact factor: 3.346

4.  Coculturing Bacteria Leads to Reduced Phenotypic Heterogeneities.

Authors:  Jasmine Heyse; Benjamin Buysschaert; Ruben Props; Peter Rubbens; Andre G Skirtach; Willem Waegeman; Nico Boon
Journal:  Appl Environ Microbiol       Date:  2019-04-04       Impact factor: 4.792

Review 5.  The ecology of wine fermentation: a model for the study of complex microbial ecosystems.

Authors:  C G Conacher; N A Luyt; R K Naidoo-Blassoples; D Rossouw; M E Setati; F F Bauer
Journal:  Appl Microbiol Biotechnol       Date:  2021-04-09       Impact factor: 4.813

Review 6.  A conceptual framework for invasion in microbial communities.

Authors:  Marta Kinnunen; Arnaud Dechesne; Caitlin Proctor; Frederik Hammes; David Johnson; Marcos Quintela-Baluja; David Graham; Daniele Daffonchio; Stilianos Fodelianakis; Nicole Hahn; Nico Boon; Barth F Smets
Journal:  ISME J       Date:  2016-05-03       Impact factor: 10.302

Review 7.  Synthetic transitions: towards a new synthesis.

Authors:  Ricard Solé
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-08-19       Impact factor: 6.237

Review 8.  Stochastic Community Assembly: Does It Matter in Microbial Ecology?

Authors:  Jizhong Zhou; Daliang Ning
Journal:  Microbiol Mol Biol Rev       Date:  2017-10-11       Impact factor: 11.056

9.  Coexistence and Pattern Formation in Bacterial Mixtures with Contact-Dependent Killing.

Authors:  Liyang Xiong; Robert Cooper; Lev S Tsimring
Journal:  Biophys J       Date:  2018-04-10       Impact factor: 4.033

10.  Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models.

Authors:  Noushin Hadadi; Vikash Pandey; Anush Chiappino-Pepe; Marian Morales; Hector Gallart-Ayala; Florence Mehl; Julijana Ivanisevic; Vladimir Sentchilo; Jan R van der Meer
Journal:  NPJ Syst Biol Appl       Date:  2020-01-07
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