Literature DB >> 24267890

Phosphorylation-regulated binding of RNA polymerase II to fibrous polymers of low-complexity domains.

Ilmin Kwon1, Masato Kato1, Siheng Xiang1, Leeju Wu1, Pano Theodoropoulos1, Hamid Mirzaei1, Tina Han1, Shanhai Xie1, Jeffry L Corden2, Steven L McKnight1.   

Abstract

The low-complexity (LC) domains of the products of the fused in sarcoma (FUS), Ewings sarcoma (EWS), and TAF15 genes are translocated onto a variety of different DNA-binding domains and thereby assist in driving the formation of cancerous cells. In the context of the translocated fusion proteins, these LC sequences function as transcriptional activation domains. Here, we show that polymeric fibers formed from these LC domains directly bind the C-terminal domain (CTD) of RNA polymerase II in a manner reversible by phosphorylation of the iterated, heptad repeats of the CTD. Mutational analysis indicates that the degree of binding between the CTD and the LC domain polymers correlates with the strength of transcriptional activation. These studies offer a simple means of conceptualizing how RNA polymerase II is recruited to active genes in its unphosphorylated state and released for elongation following phosphorylation of the CTD.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 24267890      PMCID: PMC4010232          DOI: 10.1016/j.cell.2013.10.033

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  34 in total

1.  Simple sequences are rare in the Protein Data Bank.

Authors:  Melanie A Huntley; G Brian Golding
Journal:  Proteins       Date:  2002-07-01

2.  The MO15 cell cycle kinase is associated with the TFIIH transcription-DNA repair factor.

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Journal:  Cell       Date:  1994-12-16       Impact factor: 41.582

3.  Characterization of the residues phosphorylated in vitro by different C-terminal domain kinases.

Authors:  S Trigon; H Serizawa; J W Conaway; R C Conaway; S P Jackson; M Morange
Journal:  J Biol Chem       Date:  1998-03-20       Impact factor: 5.157

4.  Overcoming expression and purification problems of RhoGDI using a family of "parallel" expression vectors.

Authors:  P Sheffield; S Garrard; Z Derewenda
Journal:  Protein Expr Purif       Date:  1999-02       Impact factor: 1.650

5.  Cyclin C/CDK8 and cyclin H/CDK7/p36 are biochemically distinct CTD kinases.

Authors:  P Rickert; J L Corden; E Lees
Journal:  Oncogene       Date:  1999-01-28       Impact factor: 9.867

6.  Fusion of the dominant negative transcription regulator CHOP with a novel gene FUS by translocation t(12;16) in malignant liposarcoma.

Authors:  T H Rabbitts; A Forster; R Larson; P Nathan
Journal:  Nat Genet       Date:  1993-06       Impact factor: 38.330

7.  A unique structure at the carboxyl terminus of the largest subunit of eukaryotic RNA polymerase II.

Authors:  J L Corden; D L Cadena; J M Ahearn; M E Dahmus
Journal:  Proc Natl Acad Sci U S A       Date:  1985-12       Impact factor: 11.205

8.  A novel effector domain from the RNA-binding protein TLS or EWS is required for oncogenic transformation by CHOP.

Authors:  H Zinszner; R Albalat; D Ron
Journal:  Genes Dev       Date:  1994-11-01       Impact factor: 11.361

9.  C-terminal repeat domain kinase I phosphorylates Ser2 and Ser5 of RNA polymerase II C-terminal domain repeats.

Authors:  Janice C Jones; Hemali P Phatnani; Timothy A Haystead; Justin A MacDonald; S Munir Alam; Arno L Greenleaf
Journal:  J Biol Chem       Date:  2004-03-26       Impact factor: 5.157

10.  Fusion of CHOP to a novel RNA-binding protein in human myxoid liposarcoma.

Authors:  A Crozat; P Aman; N Mandahl; D Ron
Journal:  Nature       Date:  1993-06-17       Impact factor: 49.962

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  235 in total

1.  Mapping Local and Global Liquid Phase Behavior in Living Cells Using Photo-Oligomerizable Seeds.

Authors:  Dan Bracha; Mackenzie T Walls; Ming-Tzo Wei; Lian Zhu; Martin Kurian; José L Avalos; Jared E Toettcher; Clifford P Brangwynne
Journal:  Cell       Date:  2018-11-29       Impact factor: 41.582

Review 2.  Phase Separation and Transcription Regulation: Are Super-Enhancers and Locus Control Regions Primary Sites of Transcription Complex Assembly?

Authors:  Aishwarya Gurumurthy; Yong Shen; Eliot M Gunn; Jörg Bungert
Journal:  Bioessays       Date:  2018-11-30       Impact factor: 4.345

3.  Synergy of aromatic residues and phosphoserines within the intrinsically disordered DNA-binding inhibitory elements of the Ets-1 transcription factor.

Authors:  Geneviève Desjardins; Charles A Meeker; Niraja Bhachech; Simon L Currie; Mark Okon; Barbara J Graves; Lawrence P McIntosh
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-14       Impact factor: 11.205

4.  Functional and mechanistic studies of XPC DNA-repair complex as transcriptional coactivator in embryonic stem cells.

Authors:  Claudia Cattoglio; Elisa T Zhang; Ivan Grubisic; Kunitoshi Chiba; Yick W Fong; Robert Tjian
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-21       Impact factor: 11.205

5.  Self-assembled FUS binds active chromatin and regulates gene transcription.

Authors:  Liuqing Yang; Jozsef Gal; Jing Chen; Haining Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-01       Impact factor: 11.205

6.  Phase transition of spindle-associated protein regulate spindle apparatus assembly.

Authors:  Hao Jiang; Shusheng Wang; Yuejia Huang; Xiaonan He; Honggang Cui; Xueliang Zhu; Yixian Zheng
Journal:  Cell       Date:  2015-09-17       Impact factor: 41.582

7.  Structured States of Disordered Proteins from Genomic Sequences.

Authors:  Agnes Toth-Petroczy; Perry Palmedo; John Ingraham; Thomas A Hopf; Bonnie Berger; Chris Sander; Debora S Marks
Journal:  Cell       Date:  2016-09-22       Impact factor: 41.582

Review 8.  The Role of RNA in Biological Phase Separations.

Authors:  Marta M Fay; Paul J Anderson
Journal:  J Mol Biol       Date:  2018-05-10       Impact factor: 5.469

9.  The identification of putative RNA polymerase II C-terminal domain associated proteins in red and green algae.

Authors:  Chunlin Yang; Paul W Hager; John W Stiller
Journal:  Transcription       Date:  2014-12-10

Review 10.  RNA Binding Proteins and the Pathogenesis of Frontotemporal Lobar Degeneration.

Authors:  Jeffrey W Hofmann; William W Seeley; Eric J Huang
Journal:  Annu Rev Pathol       Date:  2018-10-24       Impact factor: 23.472

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