Literature DB >> 24263676

Troika of single particle tracking programing: SNR enhancement, particle identification, and mapping.

Bo Shuang1, Jixin Chen, Lydia Kisley, Christy F Landes.   

Abstract

Single particle tracking (SPT) techniques provide a microscopic approach to probe in vivo and in vitro structure and reactions. Automatic analysis of SPT data with high efficiency and accuracy spurs the development of SPT algorithms. In this perspective, we review a range of available techniques used in SPT analysis programs. In addition, we present an example SPT program step-by-step to provide a guide so that researchers can use, modify, and/or write a SPT program for their own purposes.

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Year:  2014        PMID： 24263676      PMCID： PMC4041580          DOI： 10.1039/c3cp53968g

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN： 1463-9076            Impact factor:   3.676


  69 in total

1.  Super resolution for common probes and common microscopes.

Authors:  Keith A Lidke
Journal:  Nat Methods       Date:  2012-01-30       Impact factor: 28.547

2.  Static and dynamic errors in particle tracking microrheology.

Authors:  Thierry Savin; Patrick S Doyle
Journal:  Biophys J       Date:  2004-11-08       Impact factor: 4.033

3.  Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots.

Authors:  Auguste Genovesio; Tim Liedl; Valentina Emiliani; Wolfgang J Parak; Maité Coppey-Moisan; Jean-Christophe Olivo-Marin
Journal:  IEEE Trans Image Process       Date:  2006-05       Impact factor: 10.856

4.  Methods to track single-molecule trajectories.

Authors:  Stephen Anthony; Liangfang Zhang; Steve Granick
Journal:  Langmuir       Date:  2006-06-06       Impact factor: 3.882

5.  Visualization and quantification of vesicle trafficking on a three-dimensional cytoskeleton network in living cells.

Authors:  Victor Racine; Martin Sachse; Jean Salamero; Vincent Fraisier; Alain Trubuil; Jean-Baptiste Sibarita
Journal:  J Microsc       Date:  2007-03       Impact factor: 1.758

Review 6.  Intracellular objects tracking.

Authors:  Yannis Kalaidzidis
Journal:  Eur J Cell Biol       Date:  2007-07-23       Impact factor: 4.492

7.  Image analysis with rapid and accurate two-dimensional Gaussian fitting.

Authors:  Stephen M Anthony; Steve Granick
Journal:  Langmuir       Date:  2009-07-21       Impact factor: 3.882

8.  Accurate detection and complete tracking of large populations of features in three dimensions.

Authors:  Yongxiang Gao; Maria L Kilfoil
Journal:  Opt Express       Date:  2009-03-16       Impact factor: 3.894

9.  Detection of intensity changes with subpixel accuracy using laplacian-gaussian masks.

Authors:  A Huertas; G Medioni
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  1986-05       Impact factor: 6.226

10.  Robust single-particle tracking in live-cell time-lapse sequences.

Authors:  Khuloud Jaqaman; Dinah Loerke; Marcel Mettlen; Hirotaka Kuwata; Sergio Grinstein; Sandra L Schmid; Gaudenz Danuser
Journal:  Nat Methods       Date:  2008-07-20       Impact factor: 28.547
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  11 in total

1.  A mechanistic examination of salting out in protein-polymer membrane interactions.

Authors:  Nicholas A Moringo; Logan D C Bishop; Hao Shen; Anastasiia Misiura; Nicole C Carrejo; Rashad Baiyasi; Wenxiao Wang; Fan Ye; Jacob T Robinson; Christy F Landes
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-28       Impact factor: 11.205

2.  Correlation analysis framework for localization-based superresolution microscopy.

Authors:  Joerg Schnitzbauer; Yina Wang; Shijie Zhao; Matthew Bakalar; Tulip Nuwal; Baohui Chen; Bo Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-12       Impact factor: 11.205

3.  Ultrafast Transient Absorption Spectra of Photoexcited YOYO-1 molecules call for additional investigations of their fluorescence quenching mechanism.

Authors:  Lei Wang; Joseph R Pyle; Katherine A Cimatu; Jixin Chen
Journal:  J Photochem Photobiol A Chem       Date:  2018-09-10       Impact factor: 4.291

4.  In Situ Sensing of Reactive Oxygen Species on Dye-Stained Single DNA Molecules under Illumination.

Authors:  Joseph R Pyle; Kurt Waldo E Sy Piecco; Juvinch R Vicente; Jixin Chen
Journal:  Langmuir       Date:  2019-08-20       Impact factor: 3.882

5.  Method for the generation and visualization of cross-sectional images of three-dimensional point spread functions for rotationally symmetric intraocular lenses.

Authors:  Jan Sievers; Ricardo Elsner; Sebastian Bohn; Melanie Schünemann; Heinrich Stolz; Rudolf F Guthoff; Oliver Stachs; Karsten Sperlich
Journal:  Biomed Opt Express       Date:  2022-02-01       Impact factor: 3.732

Review 6.  Molecular approaches to chromatography using single molecule spectroscopy.

Authors:  Lydia Kisley; Christy F Landes
Journal:  Anal Chem       Date:  2014-12-03       Impact factor: 6.986

7.  Generalized recovery algorithm for 3D super-resolution microscopy using rotating point spread functions.

Authors:  Bo Shuang; Wenxiao Wang; Hao Shen; Lawrence J Tauzin; Charlotte Flatebo; Jianbo Chen; Nicholas A Moringo; Logan D C Bishop; Kevin F Kelly; Christy F Landes
Journal:  Sci Rep       Date:  2016-08-04       Impact factor: 4.379

8.  Adsorption and Unfolding of a Single Protein Triggers Nanoparticle Aggregation.

Authors:  Sergio Dominguez-Medina; Lydia Kisley; Lawrence J Tauzin; Anneli Hoggard; Bo Shuang; A Swarnapali D S Indrasekara; Sishan Chen; Lin-Yung Wang; Paul J Derry; Anton Liopo; Eugene R Zubarev; Christy F Landes; Stephan Link
Journal:  ACS Nano       Date:  2016-01-20       Impact factor: 15.881

9.  Photobleaching of YOYO-1 in super-resolution single DNA fluorescence imaging.

Authors:  Joseph R Pyle; Jixin Chen
Journal:  Beilstein J Nanotechnol       Date:  2017-11-02       Impact factor: 3.649

10.  Charge-dependent transport switching of single molecular ions in a weak polyelectrolyte multilayer.

Authors:  Lawrence J Tauzin; Bo Shuang; Lydia Kisley; Andrea P Mansur; Jixin Chen; Al de Leon; Rigoberto C Advincula; Christy F Landes
Journal:  Langmuir       Date:  2014-07-08       Impact factor: 3.882
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