Literature DB >> 24256864

In-ice evolution of RNA polymerase ribozyme activity.

James Attwater1, Aniela Wochner, Philipp Holliger.   

Abstract

Mechanisms of molecular self-replication have the potential to shed light on the origins of life. In particular, self-replication through RNA-catalysed templated RNA synthesis is thought to have supported a primordial 'RNA world'. However, existing polymerase ribozymes lack the capacity to synthesize RNAs approaching their own size. Here, we report the in vitro evolution of such catalysts directly in the RNA-stabilizing medium of water ice, which yielded RNA polymerase ribozymes specifically adapted to sub-zero temperatures and able to synthesize RNA in ices at temperatures as low as -19 °C. The combination of cold-adaptive mutations with a previously described 5' extension operating at ambient temperatures enabled the design of a first polymerase ribozyme capable of catalysing the accurate synthesis of an RNA sequence longer than itself (adding up to 206 nucleotides), an important stepping stone towards RNA self-replication.

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Year:  2013        PMID: 24256864      PMCID: PMC3920166          DOI: 10.1038/nchem.1781

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  29 in total

1.  Synthesizing life.

Authors:  J W Szostak; D P Bartel; P L Luisi
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

2.  Atmospheric aerosols as prebiotic chemical reactors.

Authors:  C M Dobson; G B Ellison; A F Tuck; V Vaida
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

3.  RNA-catalyzed RNA polymerization: accurate and general RNA-templated primer extension.

Authors:  W K Johnston; P J Unrau; M S Lawrence; M E Glasner; D P Bartel
Journal:  Science       Date:  2001-05-18       Impact factor: 47.728

4.  Processivity of ribozyme-catalyzed RNA polymerization.

Authors:  Michael S Lawrence; David P Bartel
Journal:  Biochemistry       Date:  2003-07-29       Impact factor: 3.162

Review 5.  The origins of the RNA world.

Authors:  Michael P Robertson; Gerald F Joyce
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-05-01       Impact factor: 10.005

6.  Ribozyme-catalyzed transcription of an active ribozyme.

Authors:  Aniela Wochner; James Attwater; Alan Coulson; Philipp Holliger
Journal:  Science       Date:  2011-04-08       Impact factor: 47.728

7.  Crystal structure of the catalytic core of an RNA-polymerase ribozyme.

Authors:  David M Shechner; Robert A Grant; Sarah C Bagby; Yelena Koldobskaya; Joseph A Piccirilli; David P Bartel
Journal:  Science       Date:  2009-11-27       Impact factor: 47.728

8.  Effect of stalling after mismatches on the error catastrophe in nonenzymatic nucleic acid replication.

Authors:  Sudha Rajamani; Justin K Ichida; Tibor Antal; Douglas A Treco; Kevin Leu; Martin A Nowak; Jack W Szostak; Irene A Chen
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

9.  The structural basis of RNA-catalyzed RNA polymerization.

Authors:  David M Shechner; David P Bartel
Journal:  Nat Struct Mol Biol       Date:  2011-08-21       Impact factor: 15.369

10.  RNA catalysis in model protocell vesicles.

Authors:  Irene A Chen; Kourosh Salehi-Ashtiani; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2005-09-28       Impact factor: 15.419

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  92 in total

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Authors:  Michael P Robertson; Gerald F Joyce
Journal:  Chem Biol       Date:  2014-01-02

3.  Origin of life: Cold-hearted RNA heats up life.

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Journal:  Nat Chem       Date:  2013-12       Impact factor: 24.427

4.  An RNA polymerase ribozyme that synthesizes its own ancestor.

Authors:  Katrina F Tjhung; Maxim N Shokhirev; David P Horning; Gerald F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-27       Impact factor: 11.205

5.  Salt-promoted synthesis of RNA-like molecules in simulated hydrothermal conditions.

Authors:  Laura Da Silva; Marie-Christine Maurel; David Deamer
Journal:  J Mol Evol       Date:  2014-12-09       Impact factor: 2.395

6.  Origins of life: RNA made in its own mirror image.

Authors:  Sandip A Shelke; Joseph A Piccirilli
Journal:  Nature       Date:  2014-10-29       Impact factor: 49.962

Review 7.  The RNA World: molecular cooperation at the origins of life.

Authors:  Paul G Higgs; Niles Lehman
Journal:  Nat Rev Genet       Date:  2014-11-11       Impact factor: 53.242

8.  Prebiotic chemistry: Replicating towards complexity.

Authors:  Irene A Chen
Journal:  Nat Chem       Date:  2015-03       Impact factor: 24.427

9.  Encapsulation of Nucleic Acids into Giant Unilamellar Vesicles by Freeze-Thaw: a Way Protocells May Form.

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Journal:  Orig Life Evol Biosph       Date:  2016-11-02       Impact factor: 1.950

10.  Mineral surfaces select for longer RNA molecules.

Authors:  Ryo Mizuuchi; Alex Blokhuis; Lena Vincent; Philippe Nghe; Niles Lehman; David Baum
Journal:  Chem Commun (Camb)       Date:  2019-02-12       Impact factor: 6.222

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